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The map label for this gene is carQ

Identifier: 108762194

GI number: 108762194

Start: 5034991

End: 5035515

Strand: Direct

Name: carQ

Synonym: MXAN_4088

Alternate gene names: 108762194

Gene position: 5034991-5035515 (Clockwise)

Preceding gene: 108760743

Following gene: 108759900

Centisome position: 55.09

GC content: 70.1

Gene sequence:

>525_bases
ATGGAACGGTTTCGCGACGGAGCACAGGACGCCTTCGAGGACCTCTTCGCGCGGCACGCGCCGCGGGTCCAAGGCTTCCT
GGCCCGGATGGTGCGCAATGGCGCGCTCGCGGAAGATCTGCTCCAGGCCACCTTCTTGTCCGTCATCCGCTCGCGGGGCC
GCTACGAGCCCGGCACCCGCTTCATCCCCTGGCTGATGACCATTGCCGCGAACGCCGCGCGCGACGCGTTGAGGCATCAG
CGGCACGTAGACGCCTATGCCTCCCGGGAGGACACCGCGACGCCCGCATCCGCGGCGCCGGATGACAGCGACCCGTCGCT
GCGCAGGCACCTGCTGGACGCCTTGCAACAACTCCACCCGGACCACCGTGAAGCCGTGGTGCTCAGCAAGGTGGAGGGCT
GGTCCTTCGAGGAGATTGGCGCGCTGCGGGGCATCAGCCCTGGCGCCGCGCGGCTGCGAGCGCACCGGGGCTACGAGAAG
CTGCGCGAGCTGCTGGGCGAGCTGGAGCTGGAGGTGGCGCGATGA

Upstream 100 bases:

>100_bases
CTTTCCTCACCGAACCTTGAGAAGCGCGAGCGCCGGAAACACTTTCGCAGGTGGCCCGTAGAGGAGTCGGGTGATGCGGA
GCCAAACGGACGAAGCACTC

Downstream 100 bases:

>100_bases
AGCCACCGATGGACCTGGACTCGTTGCTCACCCAGACGCCCGCGAAGGACAACGCCGCGCTGGAGCGCGTGCTCGCCGCG
GCCCGGGGTGAACTGGCGCT

Product: RNA polymerase sigma factor CarQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MERFRDGAQDAFEDLFARHAPRVQGFLARMVRNGALAEDLLQATFLSVIRSRGRYEPGTRFIPWLMTIAANAARDALRHQ
RHVDAYASREDTATPASAAPDDSDPSLRRHLLDALQQLHPDHREAVVLSKVEGWSFEEIGALRGISPGAARLRAHRGYEK
LRELLGELELEVAR

Sequences:

>Translated_174_residues
MERFRDGAQDAFEDLFARHAPRVQGFLARMVRNGALAEDLLQATFLSVIRSRGRYEPGTRFIPWLMTIAANAARDALRHQ
RHVDAYASREDTATPASAAPDDSDPSLRRHLLDALQQLHPDHREAVVLSKVEGWSFEEIGALRGISPGAARLRAHRGYEK
LRELLGELELEVAR
>Mature_174_residues
MERFRDGAQDAFEDLFARHAPRVQGFLARMVRNGALAEDLLQATFLSVIRSRGRYEPGTRFIPWLMTIAANAARDALRHQ
RHVDAYASREDTATPASAAPDDSDPSLRRHLLDALQQLHPDHREAVVLSKVEGWSFEEIGALRGISPGAARLRAHRGYEK
LRELLGELELEVAR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes for the light induced biosynthesis of carotenoids

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CARQ_MYXXA (Q06909)

Other databases:

- EMBL:   X71062
- PIR:   S39877
- ProteinModelPortal:   Q06909
- SMR:   Q06909
- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- TIGRFAMs:   TIGR02937

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4; SSF88946 Sigma_r2; SSF88659 Sigma_r3_r4

EC number: NA

Molecular weight: Translated: 19575; Mature: 19575

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERFRDGAQDAFEDLFARHAPRVQGFLARMVRNGALAEDLLQATFLSVIRSRGRYEPGTR
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCH
FIPWLMTIAANAARDALRHQRHVDAYASREDTATPASAAPDDSDPSLRRHLLDALQQLHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
DHREAVVLSKVEGWSFEEIGALRGISPGAARLRAHRGYEKLRELLGELELEVAR
CHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MERFRDGAQDAFEDLFARHAPRVQGFLARMVRNGALAEDLLQATFLSVIRSRGRYEPGTR
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCH
FIPWLMTIAANAARDALRHQRHVDAYASREDTATPASAAPDDSDPSLRRHLLDALQQLHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
DHREAVVLSKVEGWSFEEIGALRGISPGAARLRAHRGYEKLRELLGELELEVAR
CHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934835; 8052622