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The map label for this gene is yhgF [C]

Identifier: 108761556

GI number: 108761556

Start: 1634739

End: 1637090

Strand: Direct

Name: yhgF [C]

Synonym: MXAN_1391

Alternate gene names: 108761556

Gene position: 1634739-1637090 (Clockwise)

Preceding gene: 108762756

Following gene: 108759407

Centisome position: 17.89

GC content: 71.3

Gene sequence:

>2352_bases
ATGCATCCCTACGCCGCTGAGCTTTCCCAGGAGCTGGGCCTCAGGCCCGAGCAGGTGGACCGGACCCTCGCGCTGCAAGA
GGACGGAGCCACAGTCCCTTTCATCGCGCGCTACCGCAAGGAAGTCACGGGCGGCCTGGACGAGGTCCAGATTCAAACCC
TCTTCGACCGGGCCACCGAGCGCGCCGAGCTGGACTCCCGGCGCGACACCATCCTCCGCTCCATCGAGGAGCAGGGGAAG
CTGACGCCGGAGCTCGCGAAGGCGCTCAAGGCCGCCAGGGCGCGCACGGAGCTGGAGGACCTCTACCTTCCTTACAAGCC
CAAGCGCCGCACGCGCGCCGCCATTGCCCGGGAGCGCGGGCTGGAGCCGCTGGCGGACCTGGTGTGGAAGCAGGACGGTC
GTCGCGGCGAGGACGTGGCCGCGCGCGTGCGCCCCTACGTCAACCCGGAGAAGGACGTACCGGACCAGGCCGCGGCGCTC
GCGGGCGCGCGCGACATCTGCGCCGAGCGCGTGGCCGAGGACGCCGGCCTGCGCCGCGAGGCCCGCGAGGTGAGCGCGCG
CCGGGGCACGCTGTGTTCGAACGTGGTGCCCGCGAAGAAGGGCGAGACGACCAAGTTCGAGAACTACTATGGCCACGAGG
AGCCCCTGTCCCAGGCCCCCTCGCACCGCGTGCTGGCACTGCTGCGCGGCGAGGAAGAGGGCGTGCTGAAGGTGAAGCTC
TCCCTGCCCGATGACGAGGTGAAGGGCCTGCTGGCCGGGCGCGTGGTGACGAAGCCGCAGTCCATCTTCTCACAGGAGCT
GCGCGCCGCCGTGGAGGACAGCTGGGACCGGCTGATGGGGCCGTCGCTGGAGGCGGAGCTGCGCTCGGAGCTGAAGGAGC
GCGCGGACCGGCAGGCCATTGGCGTCTTCGGGGAGAACCTGCGCCACCTGCTGCTCACGCCGCCCGCGGGCGCCCGCGCG
GTGCTGGCCCTGGACCCGGGCCTTCGCACGGGCACCAAGCTGGCGATGATGGACGTCACCGGCAAGGTGGTGGAGACGCT
GACGCTCTACTCGGAGCGCGGAGCGGACGAGCGCGCCCGCGCGGCGAAGCTGCTGGCCGCGGTGGTGCAGAAGCACAAGC
CGGAGCTCGTCGCCGTGGGCAACGGCACGGGCAGCCGCGAGGCGGAAGTCTTCGTGCGCGACACGCTGAAGGCGATGGGT
TCGCAGGTCCCCGTGGTGTCGGTGAGCGAGCAGGGCGCGTCCATCTACTCCGCCTCCGAGGTGGCCCGCGACGAGTTCCC
GGACCTGGACGTCAGCCTGCGCGGCGCGGTGTCCATTGGCCGGCGCCTCCAGGACCCGCTGGCGGAGCTGGTGAAGATCG
ACCCCAAGAGCATCGGCGTGGGGCAGTACCAGCACGACGTGGACCAGGGGCTGCTCAAGAAGAAGCTGGGTGAGGTGGTG
GACTCGTGCGTCAACGCGGTGGGCGTGGACGTCAACACCGCGTCTCCGCAGTTGTTGGAGCACGTGTCCGGCGTGGGGCC
GTCCCTGGCGAAGAAGCTGGTGGCGCACCGCGCGTCGAAGGGCCGCTTCACCACGCGGCGCGAGCTGCTGAAGGTGAGTG
GCCTGGGGCCCAAGACGTTCGAACAGGCGGCGGGCTTCCTGCGCGTGCGTGGGACGGAGCCGCTGGACGCCAGCGCCGTC
CATCCGGAGCGCTACGGCGTCGTGGAGCGCATGGCCAAGGATTTGGGCGTGGCCGTGAGCGCGCTGGTGGGCAATGCCGA
GCTGGTCCGCAAGATTGACCTGAAGCGCTACCTGGGCCCGGACCTGGGCGAGATGACGCTCAAGGACATCCTGGCGGAGC
TGGAGAAGCCCAGCCGCGACCCGCGCGGCGACTTCACCGCGCCCCAGCACCGCGAGGACCTGCGCTCGCTGGAGGACGTG
AAGGAGGGCATGGTGCTCCAGGGCGTGGTGACGAACGTCACCGCGTTCGGCGCCTTCGTGGACGTGGGCGTGCACCAGGA
CGGCCTCGTCCACGTGTCGCAAATCTCCACGCGCTTCGTGAAGGACCCCTCCGAAGTGGTGAAGGTGGGCGACCGGCTGA
CGGTGCGCGTGCTCACCGTGGACCTGGCGCGCAAGCGGCTGGCGCTCTCCGTGCGCGCGGTGCAGGAGGGTGGAGCGCCG
CAGCCGTCGGGCCGTCCCCCCGTCGGCGGGGCCACGGGACCGAGCCGCATGACGGAGCGCGGTGGCGGAAGCGGCGGGCC
TCGTCAGGGCGCCCGGCCTGCCTCCGGCCCGGGGCCGAAGCCGGCTTCGGGGCCCGGTGAGAAGAAAGGCCCGGAGCCGT
TCAACAACCCGTTCAGCAAGCTCAAGCGCTGA

Upstream 100 bases:

>100_bases
CGGAGTGGGACGCCCGGCGCGCGGCGTTCGTCGCGGGCTGAGCGCTTCGGACGACCGGTCTCTGGGAGCAGTGGGGGGCC
CGGGTTATAGAAGCGGCGTC

Downstream 100 bases:

>100_bases
CGGGGCGTCGCCTCACTTCGCGTCGATGGGGAAGGGACGGACTTCCCCCGCGAGCACCTGGTTGCGCGCCAGCAGCTTCG
CGAACCGGTCCGTCCCGTTG

Product: S1 RNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 783; Mature: 783

Protein sequence:

>783_residues
MHPYAAELSQELGLRPEQVDRTLALQEDGATVPFIARYRKEVTGGLDEVQIQTLFDRATERAELDSRRDTILRSIEEQGK
LTPELAKALKAARARTELEDLYLPYKPKRRTRAAIARERGLEPLADLVWKQDGRRGEDVAARVRPYVNPEKDVPDQAAAL
AGARDICAERVAEDAGLRREAREVSARRGTLCSNVVPAKKGETTKFENYYGHEEPLSQAPSHRVLALLRGEEEGVLKVKL
SLPDDEVKGLLAGRVVTKPQSIFSQELRAAVEDSWDRLMGPSLEAELRSELKERADRQAIGVFGENLRHLLLTPPAGARA
VLALDPGLRTGTKLAMMDVTGKVVETLTLYSERGADERARAAKLLAAVVQKHKPELVAVGNGTGSREAEVFVRDTLKAMG
SQVPVVSVSEQGASIYSASEVARDEFPDLDVSLRGAVSIGRRLQDPLAELVKIDPKSIGVGQYQHDVDQGLLKKKLGEVV
DSCVNAVGVDVNTASPQLLEHVSGVGPSLAKKLVAHRASKGRFTTRRELLKVSGLGPKTFEQAAGFLRVRGTEPLDASAV
HPERYGVVERMAKDLGVAVSALVGNAELVRKIDLKRYLGPDLGEMTLKDILAELEKPSRDPRGDFTAPQHREDLRSLEDV
KEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSQISTRFVKDPSEVVKVGDRLTVRVLTVDLARKRLALSVRAVQEGGAP
QPSGRPPVGGATGPSRMTERGGGSGGPRQGARPASGPGPKPASGPGEKKGPEPFNNPFSKLKR

Sequences:

>Translated_783_residues
MHPYAAELSQELGLRPEQVDRTLALQEDGATVPFIARYRKEVTGGLDEVQIQTLFDRATERAELDSRRDTILRSIEEQGK
LTPELAKALKAARARTELEDLYLPYKPKRRTRAAIARERGLEPLADLVWKQDGRRGEDVAARVRPYVNPEKDVPDQAAAL
AGARDICAERVAEDAGLRREAREVSARRGTLCSNVVPAKKGETTKFENYYGHEEPLSQAPSHRVLALLRGEEEGVLKVKL
SLPDDEVKGLLAGRVVTKPQSIFSQELRAAVEDSWDRLMGPSLEAELRSELKERADRQAIGVFGENLRHLLLTPPAGARA
VLALDPGLRTGTKLAMMDVTGKVVETLTLYSERGADERARAAKLLAAVVQKHKPELVAVGNGTGSREAEVFVRDTLKAMG
SQVPVVSVSEQGASIYSASEVARDEFPDLDVSLRGAVSIGRRLQDPLAELVKIDPKSIGVGQYQHDVDQGLLKKKLGEVV
DSCVNAVGVDVNTASPQLLEHVSGVGPSLAKKLVAHRASKGRFTTRRELLKVSGLGPKTFEQAAGFLRVRGTEPLDASAV
HPERYGVVERMAKDLGVAVSALVGNAELVRKIDLKRYLGPDLGEMTLKDILAELEKPSRDPRGDFTAPQHREDLRSLEDV
KEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSQISTRFVKDPSEVVKVGDRLTVRVLTVDLARKRLALSVRAVQEGGAP
QPSGRPPVGGATGPSRMTERGGGSGGPRQGARPASGPGPKPASGPGEKKGPEPFNNPFSKLKR
>Mature_783_residues
MHPYAAELSQELGLRPEQVDRTLALQEDGATVPFIARYRKEVTGGLDEVQIQTLFDRATERAELDSRRDTILRSIEEQGK
LTPELAKALKAARARTELEDLYLPYKPKRRTRAAIARERGLEPLADLVWKQDGRRGEDVAARVRPYVNPEKDVPDQAAAL
AGARDICAERVAEDAGLRREAREVSARRGTLCSNVVPAKKGETTKFENYYGHEEPLSQAPSHRVLALLRGEEEGVLKVKL
SLPDDEVKGLLAGRVVTKPQSIFSQELRAAVEDSWDRLMGPSLEAELRSELKERADRQAIGVFGENLRHLLLTPPAGARA
VLALDPGLRTGTKLAMMDVTGKVVETLTLYSERGADERARAAKLLAAVVQKHKPELVAVGNGTGSREAEVFVRDTLKAMG
SQVPVVSVSEQGASIYSASEVARDEFPDLDVSLRGAVSIGRRLQDPLAELVKIDPKSIGVGQYQHDVDQGLLKKKLGEVV
DSCVNAVGVDVNTASPQLLEHVSGVGPSLAKKLVAHRASKGRFTTRRELLKVSGLGPKTFEQAAGFLRVRGTEPLDASAV
HPERYGVVERMAKDLGVAVSALVGNAELVRKIDLKRYLGPDLGEMTLKDILAELEKPSRDPRGDFTAPQHREDLRSLEDV
KEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSQISTRFVKDPSEVVKVGDRLTVRVLTVDLARKRLALSVRAVQEGGAP
QPSGRPPVGGATGPSRMTERGGGSGGPRQGARPASGPGPKPASGPGEKKGPEPFNNPFSKLKR

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=784, Percent_Identity=33.2908163265306, Blast_Score=365, Evalue=1e-100,
Organism=Homo sapiens, GI27597090, Length=713, Percent_Identity=23.422159887798, Blast_Score=131, Evalue=2e-30,
Organism=Escherichia coli, GI87082262, Length=778, Percent_Identity=50.3856041131105, Blast_Score=682, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=93, Percent_Identity=43.010752688172, Blast_Score=79, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17511129, Length=701, Percent_Identity=29.8145506419401, Blast_Score=247, Evalue=1e-65,
Organism=Caenorhabditis elegans, GI17552892, Length=605, Percent_Identity=24.6280991735537, Blast_Score=107, Evalue=3e-23,
Organism=Drosophila melanogaster, GI62484314, Length=769, Percent_Identity=32.5097529258778, Blast_Score=379, Evalue=1e-105,
Organism=Drosophila melanogaster, GI24640080, Length=718, Percent_Identity=22.5626740947075, Blast_Score=120, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 84769; Mature: 84769

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPYAAELSQELGLRPEQVDRTLALQEDGATVPFIARYRKEVTGGLDEVQIQTLFDRATE
CCCCHHHHHHHHCCCHHHHHHHEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
RAELDSRRDTILRSIEEQGKLTPELAKALKAARARTELEDLYLPYKPKRRTRAAIARERG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
LEPLADLVWKQDGRRGEDVAARVRPYVNPEKDVPDQAAALAGARDICAERVAEDAGLRRE
CCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AREVSARRGTLCSNVVPAKKGETTKFENYYGHEEPLSQAPSHRVLALLRGEEEGVLKVKL
HHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHEEHEEECCCCCEEEEEE
SLPDDEVKGLLAGRVVTKPQSIFSQELRAAVEDSWDRLMGPSLEAELRSELKERADRQAI
ECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
GVFGENLRHLLLTPPAGARAVLALDPGLRTGTKLAMMDVTGKVVETLTLYSERGADERAR
HHHHHCCCEEEECCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHH
AAKLLAAVVQKHKPELVAVGNGTGSREAEVFVRDTLKAMGSQVPVVSVSEQGASIYSASE
HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
VARDEFPDLDVSLRGAVSIGRRLQDPLAELVKIDPKSIGVGQYQHDVDQGLLKKKLGEVV
HHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
DSCVNAVGVDVNTASPQLLEHVSGVGPSLAKKLVAHRASKGRFTTRRELLKVSGLGPKTF
HHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHH
EQAAGFLRVRGTEPLDASAVHPERYGVVERMAKDLGVAVSALVGNAELVRKIDLKRYLGP
HHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
DLGEMTLKDILAELEKPSRDPRGDFTAPQHREDLRSLEDVKEGMVLQGVVTNVTAFGAFV
CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
DVGVHQDGLVHVSQISTRFVKDPSEVVKVGDRLTVRVLTVDLARKRLALSVRAVQEGGAP
CCCCCCCCCEEHHHHHHHHHCCHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCC
QPSGRPPVGGATGPSRMTERGGGSGGPRQGARPASGPGPKPASGPGEKKGPEPFNNPFSK
CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
LKR
HCC
>Mature Secondary Structure
MHPYAAELSQELGLRPEQVDRTLALQEDGATVPFIARYRKEVTGGLDEVQIQTLFDRATE
CCCCHHHHHHHHCCCHHHHHHHEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
RAELDSRRDTILRSIEEQGKLTPELAKALKAARARTELEDLYLPYKPKRRTRAAIARERG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
LEPLADLVWKQDGRRGEDVAARVRPYVNPEKDVPDQAAALAGARDICAERVAEDAGLRRE
CCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AREVSARRGTLCSNVVPAKKGETTKFENYYGHEEPLSQAPSHRVLALLRGEEEGVLKVKL
HHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHEEHEEECCCCCEEEEEE
SLPDDEVKGLLAGRVVTKPQSIFSQELRAAVEDSWDRLMGPSLEAELRSELKERADRQAI
ECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
GVFGENLRHLLLTPPAGARAVLALDPGLRTGTKLAMMDVTGKVVETLTLYSERGADERAR
HHHHHCCCEEEECCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHH
AAKLLAAVVQKHKPELVAVGNGTGSREAEVFVRDTLKAMGSQVPVVSVSEQGASIYSASE
HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
VARDEFPDLDVSLRGAVSIGRRLQDPLAELVKIDPKSIGVGQYQHDVDQGLLKKKLGEVV
HHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
DSCVNAVGVDVNTASPQLLEHVSGVGPSLAKKLVAHRASKGRFTTRRELLKVSGLGPKTF
HHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHH
EQAAGFLRVRGTEPLDASAVHPERYGVVERMAKDLGVAVSALVGNAELVRKIDLKRYLGP
HHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
DLGEMTLKDILAELEKPSRDPRGDFTAPQHREDLRSLEDVKEGMVLQGVVTNVTAFGAFV
CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
DVGVHQDGLVHVSQISTRFVKDPSEVVKVGDRLTVRVLTVDLARKRLALSVRAVQEGGAP
CCCCCCCCCEEHHHHHHHHHCCHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCC
QPSGRPPVGGATGPSRMTERGGGSGGPRQGARPASGPGPKPASGPGEKKGPEPFNNPFSK
CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
LKR
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]