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The map label for this gene is rtcB [H]

Identifier: 108761222

GI number: 108761222

Start: 333994

End: 335148

Strand: Direct

Name: rtcB [H]

Synonym: MXAN_0280

Alternate gene names: 108761222

Gene position: 333994-335148 (Clockwise)

Preceding gene: 108760659

Following gene: 108763252

Centisome position: 3.65

GC content: 74.63

Gene sequence:

>1155_bases
ATGCCCCGTCTCCTTCCGCCCGCGCCGGGCTGCAGGCCCATCCTCGTCTGGGCCCGAGCGCTGCCTCCCGGCGCGGAGAA
ACAACTGCGTCACATCGCCTCCCAGCCCTATGTCGTGGAGCACGTGGCCGCCATGCCGGACCTCCACGTCGCTTCCGGCA
TCGCAGTGGGCACCGTCTTCGCCACGGAGCACCACGTCGTACCGGGGGCCCTGGGCGGAGACCTGGGCTGCGGCGTGAGC
GCCTGGCGTTTCCCGCTCACCTCGGGCCTTCCCGGACGGGACGTGCTGGAGCGCGTGCTGTCTCAGTTGGCCGAGCGCAT
CCCCGTAGGTGACGCCGTCCACCGGGGCCGGGGGCTGCCCTTGCCCCCGGCGCTGGAGTCACCGCCCCTGTCCACCCAGA
AGCTGCGCCATGCCTGGGAGCGGCTGGCGCCCAGGCACCTGGCGACGCTCGGGGGCGGCAACCACTTCCTCGAACTGGAC
CGGGATGCGGACGGGGCCCTCTGGCTGCTGCTGCATACCGGCTCGCGGGGCGTCGGCGCGGCCATCGCGGACCACCATGG
GCGGGTGGCCCGGGCGCTCGGGGAGGGCGGCTTGCCGGCCCTGGACATCCACACCGCCGAGGGCGCCGCCTGCCTCGCCG
ACACGCAGTGGGCCTGCCGCTTCGCGCTCGCCAACCGGGAGGCCATCGCCGCTCGCGCGCTGGACGTCCTGGAGGAAGCC
CTGGGCGTGGCCGCCGACCCCACGTCGGTCGTGGACGTGCACCACAACCACGTCGCCCAGGAGGAGCACGGGGGCCGCCT
GTTGTGGGTCCACCGCAAGGGCGCGGTGGGGCTCCAATCCGGCCAACGCGGGCTCATCCCGGGTTCCATGGGGACGGCGT
CCTACGTCGCGGAGGGCCGGGGCGAGCCGCGTGCCTTCCGCTCCTGCTCACACGGGGCGGGCCGCGTCCTCACCCGGGCG
GAGGCACGGGCGCGCATCCGCCCGGCGGCGCTGGAGCACGTGCTGCGCCGCGTGGTGTACGACAAGGGGCGCGCCGCCGC
CCTGGTAGAGGAGGCACCCGCCGCCTACCGCGACATCACCGAGGTGCTGGAGGACGAGGCCGACCTCGTCCGGCCGCTCC
TGCGCCTGACACCGCTCGCCGTCCTCAAGGGCTGA

Upstream 100 bases:

>100_bases
TCGCGGAGCACCTCGACCTCAAGCGCGTGCCGCAGCTTCGCTTCATCTACATCGGCGTCTCGGAGCACACGCCCGGGGCG
GCGGAGGAGGGCGAGTCATG

Downstream 100 bases:

>100_bases
CCGGGAAGGCCGCTCCTGGCGAAAATCCGGGGGCGGCTTTACTCCGGGTGTATAGGGAGAGCGACAATGCGCCCGGCTCC
AGCCGTCATCGGGGCCCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MPRLLPPAPGCRPILVWARALPPGAEKQLRHIASQPYVVEHVAAMPDLHVASGIAVGTVFATEHHVVPGALGGDLGCGVS
AWRFPLTSGLPGRDVLERVLSQLAERIPVGDAVHRGRGLPLPPALESPPLSTQKLRHAWERLAPRHLATLGGGNHFLELD
RDADGALWLLLHTGSRGVGAAIADHHGRVARALGEGGLPALDIHTAEGAACLADTQWACRFALANREAIAARALDVLEEA
LGVAADPTSVVDVHHNHVAQEEHGGRLLWVHRKGAVGLQSGQRGLIPGSMGTASYVAEGRGEPRAFRSCSHGAGRVLTRA
EARARIRPAALEHVLRRVVYDKGRAAALVEEAPAAYRDITEVLEDEADLVRPLLRLTPLAVLKG

Sequences:

>Translated_384_residues
MPRLLPPAPGCRPILVWARALPPGAEKQLRHIASQPYVVEHVAAMPDLHVASGIAVGTVFATEHHVVPGALGGDLGCGVS
AWRFPLTSGLPGRDVLERVLSQLAERIPVGDAVHRGRGLPLPPALESPPLSTQKLRHAWERLAPRHLATLGGGNHFLELD
RDADGALWLLLHTGSRGVGAAIADHHGRVARALGEGGLPALDIHTAEGAACLADTQWACRFALANREAIAARALDVLEEA
LGVAADPTSVVDVHHNHVAQEEHGGRLLWVHRKGAVGLQSGQRGLIPGSMGTASYVAEGRGEPRAFRSCSHGAGRVLTRA
EARARIRPAALEHVLRRVVYDKGRAAALVEEAPAAYRDITEVLEDEADLVRPLLRLTPLAVLKG
>Mature_383_residues
PRLLPPAPGCRPILVWARALPPGAEKQLRHIASQPYVVEHVAAMPDLHVASGIAVGTVFATEHHVVPGALGGDLGCGVSA
WRFPLTSGLPGRDVLERVLSQLAERIPVGDAVHRGRGLPLPPALESPPLSTQKLRHAWERLAPRHLATLGGGNHFLELDR
DADGALWLLLHTGSRGVGAAIADHHGRVARALGEGGLPALDIHTAEGAACLADTQWACRFALANREAIAARALDVLEEAL
GVAADPTSVVDVHHNHVAQEEHGGRLLWVHRKGAVGLQSGQRGLIPGSMGTASYVAEGRGEPRAFRSCSHGAGRVLTRAE
ARARIRPAALEHVLRRVVYDKGRAAALVEEAPAAYRDITEVLEDEADLVRPLLRLTPLAVLKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=446, Percent_Identity=28.2511210762332, Blast_Score=121, Evalue=9e-28,
Organism=Escherichia coli, GI2367224, Length=404, Percent_Identity=33.4158415841584, Blast_Score=219, Evalue=3e-58,
Organism=Caenorhabditis elegans, GI17506665, Length=444, Percent_Identity=29.5045045045045, Blast_Score=139, Evalue=3e-33,
Organism=Drosophila melanogaster, GI24585217, Length=459, Percent_Identity=27.2331154684096, Blast_Score=114, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 40768; Mature: 40637

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLLPPAPGCRPILVWARALPPGAEKQLRHIASQPYVVEHVAAMPDLHVASGIAVGTVF
CCCCCCCCCCCCHHHHEECCCCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHCCCEEEEEE
ATEHHVVPGALGGDLGCGVSAWRFPLTSGLPGRDVLERVLSQLAERIPVGDAVHRGRGLP
ECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCC
LPPALESPPLSTQKLRHAWERLAPRHLATLGGGNHFLELDRDADGALWLLLHTGSRGVGA
CCCCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCCCCH
AIADHHGRVARALGEGGLPALDIHTAEGAACLADTQWACRFALANREAIAARALDVLEEA
HHHHHHHHHHHHHCCCCCCEEEEECCCCCEEECCCHHHHHHHHHCHHHHHHHHHHHHHHH
LGVAADPTSVVDVHHNHVAQEEHGGRLLWVHRKGAVGLQSGQRGLIPGSMGTASYVAEGR
HCCCCCCCCEEECHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCC
GEPRAFRSCSHGAGRVLTRAEARARIRPAALEHVLRRVVYDKGRAAALVEEAPAAYRDIT
CCCHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHH
EVLEDEADLVRPLLRLTPLAVLKG
HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PRLLPPAPGCRPILVWARALPPGAEKQLRHIASQPYVVEHVAAMPDLHVASGIAVGTVF
CCCCCCCCCCCHHHHEECCCCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHCCCEEEEEE
ATEHHVVPGALGGDLGCGVSAWRFPLTSGLPGRDVLERVLSQLAERIPVGDAVHRGRGLP
ECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCC
LPPALESPPLSTQKLRHAWERLAPRHLATLGGGNHFLELDRDADGALWLLLHTGSRGVGA
CCCCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCCCCH
AIADHHGRVARALGEGGLPALDIHTAEGAACLADTQWACRFALANREAIAARALDVLEEA
HHHHHHHHHHHHHCCCCCCEEEEECCCCCEEECCCHHHHHHHHHCHHHHHHHHHHHHHHH
LGVAADPTSVVDVHHNHVAQEEHGGRLLWVHRKGAVGLQSGQRGLIPGSMGTASYVAEGR
HCCCCCCCCEEECHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCC
GEPRAFRSCSHGAGRVLTRAEARARIRPAALEHVLRRVVYDKGRAAALVEEAPAAYRDIT
CCCHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHH
EVLEDEADLVRPLLRLTPLAVLKG
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]