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The map label for this gene is rbfA [H]

Identifier: 108760659

GI number: 108760659

Start: 333632

End: 333994

Strand: Direct

Name: rbfA [H]

Synonym: MXAN_0279

Alternate gene names: 108760659

Gene position: 333632-333994 (Clockwise)

Preceding gene: 108757818

Following gene: 108761222

Centisome position: 3.65

GC content: 69.42

Gene sequence:

>363_bases
ATGTCCTCTTCCAGGAATCGCCGTACCTCGGCATCGCGCCATCTGCGCGTGCAGTCCCATCTGTCCCAAGAAGTCTCCCG
CACCTTCCGGGGGGAGCTGTCCGACCCGAGGCTCGAAGGCGTCGCGCTGACGTCCTTCGAGCTGTCGCCGGACGGCCGCC
TCGTTCGCATCGGCTACACCGTCACGCCCGAAGCCGCGGCTGCCGGCCTTCGTCCCCTGCAGGCGGCGCTCGAAGGCGCC
AGCGGCTACCTGCGCTCGCAGCTCGCGGAGCACCTCGACCTCAAGCGCGTGCCGCAGCTTCGCTTCATCTACATCGGCGT
CTCGGAGCACACGCCCGGGGCGGCGGAGGAGGGCGAGTCATGA

Upstream 100 bases:

>100_bases
CCGTGCAATGGGCCGGCGTGTGTCTCGTGCATCGCTGACGGCTTGAAGCCGGGAGCGCACGAGGGGCACGCGCGGCCTTC
TGGGAACCGTTCGTCCTCTC

Downstream 100 bases:

>100_bases
TGCCCCGTCTCCTTCCGCCCGCGCCGGGCTGCAGGCCCATCCTCGTCTGGGCCCGAGCGCTGCCTCCCGGCGCGGAGAAA
CAACTGCGTCACATCGCCTC

Product: putative ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MSSSRNRRTSASRHLRVQSHLSQEVSRTFRGELSDPRLEGVALTSFELSPDGRLVRIGYTVTPEAAAAGLRPLQAALEGA
SGYLRSQLAEHLDLKRVPQLRFIYIGVSEHTPGAAEEGES

Sequences:

>Translated_120_residues
MSSSRNRRTSASRHLRVQSHLSQEVSRTFRGELSDPRLEGVALTSFELSPDGRLVRIGYTVTPEAAAAGLRPLQAALEGA
SGYLRSQLAEHLDLKRVPQLRFIYIGVSEHTPGAAEEGES
>Mature_119_residues
SSSRNRRTSASRHLRVQSHLSQEVSRTFRGELSDPRLEGVALTSFELSPDGRLVRIGYTVTPEAAAAGLRPLQAALEGAS
GYLRSQLAEHLDLKRVPQLRFIYIGVSEHTPGAAEEGES

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13114; Mature: 12983

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSRNRRTSASRHLRVQSHLSQEVSRTFRGELSDPRLEGVALTSFELSPDGRLVRIGYT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEEEE
VTPEAAAAGLRPLQAALEGASGYLRSQLAEHLDLKRVPQLRFIYIGVSEHTPGAAEEGES
ECCHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCHHCCCCEEEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
SSSRNRRTSASRHLRVQSHLSQEVSRTFRGELSDPRLEGVALTSFELSPDGRLVRIGYT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEEEE
VTPEAAAAGLRPLQAALEGASGYLRSQLAEHLDLKRVPQLRFIYIGVSEHTPGAAEEGES
ECCHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCHHCCCCEEEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA