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The map label for this gene is socA3 [H]

Identifier: 108759491

GI number: 108759491

Start: 6503603

End: 6504187

Strand: Direct

Name: socA3 [H]

Synonym: MXAN_5210

Alternate gene names: 108759491

Gene position: 6503603-6504187 (Clockwise)

Preceding gene: 108758857

Following gene: 108758614

Centisome position: 71.16

GC content: 65.47

Gene sequence:

>585_bases
ATGGGCCGCCCCCGCGGGTTCGACCGCGACGAGGCACTCGTGGAGGCGATGCGGGTGTTTTGGGCGCGCGGCTACGAGGG
CACGTCCATCCAGGATCTGGTCGATGCGATGGGCGTCAACAAGCCCAGCCTCTATTCCATCTTCGGCTGCAAGGAAGAGC
TCTTCCGCGAAGCCGTTGAACTCTACGACCGGCTCGAAGGCATTCACACCACCCGCAGCCTGGAGGATGCTCCGTCCGCA
CGCGCGGCGGTGGAGGAGATGCTGCGCGCCAATGCGCGGGCCTACACCGCCAGCGACAAACCTCGGGGGTGCATGATCGT
CCTGTCTTCGCTCCTGGGCTCGCCGGAGAACGAGCGGGTCAGGACCTTCCTCGCGGAGAATCGCCTCAGGGGTGAGCGTG
CGCTGAAGCAGCGACTCGAGCGAGGCATTCTCGATGGAGACCTCCCTGCATCCGCCGAGGTGGGGATGCTCGCCGCGTTC
TACACCACGGTGCTGGAGGGCTTGTCGATACAGTCTCGCGATGGCGCCTCCGCGAAGAAGCTCGCCGCCATCATTGATGC
CGCGATGCTCGCTTGGCCGACATGA

Upstream 100 bases:

>100_bases
GTATCTTCTTCCTGGTGATGATCGGCATCGGCGTCGCTGGCCTGCGGGCAATCGAGCGATGACTCCGCGCAAGGTGAAGA
CGAAGAAGCCTTCCGCTGTG

Downstream 100 bases:

>100_bases
GAGAATACATCTCACGCTTCTTTGACCCAACGAAGCTCACGCGCAGTACATGGGGACGCCCCACATCATGAAGGCCATCA
ATCCGCCAGGAAGACCCGCG

Product: transcriptional regulator SocA3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MGRPRGFDRDEALVEAMRVFWARGYEGTSIQDLVDAMGVNKPSLYSIFGCKEELFREAVELYDRLEGIHTTRSLEDAPSA
RAAVEEMLRANARAYTASDKPRGCMIVLSSLLGSPENERVRTFLAENRLRGERALKQRLERGILDGDLPASAEVGMLAAF
YTTVLEGLSIQSRDGASAKKLAAIIDAAMLAWPT

Sequences:

>Translated_194_residues
MGRPRGFDRDEALVEAMRVFWARGYEGTSIQDLVDAMGVNKPSLYSIFGCKEELFREAVELYDRLEGIHTTRSLEDAPSA
RAAVEEMLRANARAYTASDKPRGCMIVLSSLLGSPENERVRTFLAENRLRGERALKQRLERGILDGDLPASAEVGMLAAF
YTTVLEGLSIQSRDGASAKKLAAIIDAAMLAWPT
>Mature_193_residues
GRPRGFDRDEALVEAMRVFWARGYEGTSIQDLVDAMGVNKPSLYSIFGCKEELFREAVELYDRLEGIHTTRSLEDAPSAR
AAVEEMLRANARAYTASDKPRGCMIVLSSLLGSPENERVRTFLAENRLRGERALKQRLERGILDGDLPASAEVGMLAAFY
TTVLEGLSIQSRDGASAKKLAAIIDAAMLAWPT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=193, Percent_Identity=36.7875647668394, Blast_Score=137, Evalue=5e-34,
Organism=Escherichia coli, GI87082397, Length=182, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21386; Mature: 21254

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRPRGFDRDEALVEAMRVFWARGYEGTSIQDLVDAMGVNKPSLYSIFGCKEELFREAVE
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHH
LYDRLEGIHTTRSLEDAPSARAAVEEMLRANARAYTASDKPRGCMIVLSSLLGSPENERV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHCCCCHHHH
RTFLAENRLRGERALKQRLERGILDGDLPASAEVGMLAAFYTTVLEGLSIQSRDGASAKK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
LAAIIDAAMLAWPT
HHHHHHHHHHHCCC
>Mature Secondary Structure 
GRPRGFDRDEALVEAMRVFWARGYEGTSIQDLVDAMGVNKPSLYSIFGCKEELFREAVE
CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHH
LYDRLEGIHTTRSLEDAPSARAAVEEMLRANARAYTASDKPRGCMIVLSSLLGSPENERV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHCCCCHHHH
RTFLAENRLRGERALKQRLERGILDGDLPASAEVGMLAAFYTTVLEGLSIQSRDGASAKK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
LAAIIDAAMLAWPT
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]