| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is dacB [H]
Identifier: 108759041
GI number: 108759041
Start: 1245306
End: 1247552
Strand: Direct
Name: dacB [H]
Synonym: MXAN_1070
Alternate gene names: 108759041
Gene position: 1245306-1247552 (Clockwise)
Preceding gene: 108760766
Following gene: 108763668
Centisome position: 13.63
GC content: 71.07
Gene sequence:
>2247_bases GTGCAGGTCCATCGAGCCAGCTCCATCTTGGCCGTGTCGGCCATTATTTTCCTGTCGCTTTCTCACGCAGCGCACGCCGC GCCCGCTCCAGCGGAGAAGCGTGCGGACCGCGAGGCCCTCAAGTCCGCGCTGCTGCAGGTCCTCCAGCGCGCGCCACTGA AGGCCAGTCGCATGGGCGTGCTCATGCAGAGCCTGGACGACGGCGCCGTGGTGTTCAGCCACAACGCCGACGAACTGCTC AACCCCGCCTCCAACGTGAAGCTGGTGACGTCCGCCGCCGCGCTCGCGTCGCTGGGGCCCGAGTTCCGCTACGACACCGA GTTCCTGGTGGAGCCGGAGCTGGGCGCGGACGGCAAGGTGAAGACGCTCTACGTGCGCGGCAAGGGCGACCCGTCCATGA CGACGGAGCGCCTGTGGGGCATCGTCGCGGAGCTGTGGCACGCCGGCGTGCGTGACGTGGGCGAAATCGTGGTGGACGAC TCGTGGTTCGACGCCGAGCGCACGCCGCCCGGCTATGACCAGGAGGACACGGACCGCGCCTACATGGCGCCCACCGGCGC GGTGAGCCTCAACTGGAACGCGGTGGCCATCTACCTGCGGCCCGGCAACGCGCCGGGCGCCAAGGGCGTGGTGGAGATGG ATCCGCCCAGCGACTACTTCGTGGTGGAGAACCAGCTCACCACCGGGCCGCGGCGCGCGCGCCGGGTGTCCGTCACGTCG GACCCCTCGGGCCTCCAGCAGAAGATTGTCGTGCGCGGCCAGCTCCCGGGGGAGCGCGGCGGCGCCGTCAGCGTCTGGAA GAAGATCGACAACCCGCCCATGTACTTCGGCCAGTCGCTCAAGCAGATGCTGGTGACGCGCGGCGTGAAGATGAAGGGCA AGGTGAAGCTGGGCAAGACGTCCACCAAGGCCCGCATGCTGCACGTGTCGCAGTCGGACACGTTCGACGTGCTCCTCAAG CGCCTCAACAAGCTGTCCAGCAACTTCGTCGCCGAGCAGCTCCTCAAGACGATGGGCGCCGAGCTGCGCGGCTCGCCGGG CTCCTTCACCAAGGGCGTGGACGTGGTGGAGCAGTTCCTGGAGCGCGACGTGGGCATCCCCCGCGGCACCTACGTGATGA AGAACGGCAGCGGGCTGAACGACGCCAACCGCTTCTCCGCCACGCAGCTCAACCAACTGCTGCGGCACATGGTGCAGCGC TTCCCCTTCTCGCCGGAGTACCTGTCGTCGGTGCCCATCGCGGGCAAGGACGGCACGCTCAAGTACCGCTTCGAGGGCAG TGACGCGGTGGGCCGGCTGCGCGCCAAGACGGGCACCCTGGAGAGCGTGTCCGCGCTGAGCGGCTACGTGACGAGCGCGG GCGGAGAGCGCTTCACCTTCTCCATCATGGCCAACGACTTCGCGGGCCGCGCCGGTCCCATCGTCGCGGGCCTGGACGCG CTGGGCGCGGCGGTGGCCGCCACCGGCTCCAGCCTGGGGCCGTCCACGGCGGTGGCCGCGCTGGCGGACAGCGGGCGGCC CTCGGGCGCCGTGGACGACGTGGCCGCTCGCATCAAGACGTACCTGGAGCTGGGCGCGCAGCGCGACCAGCGCAACATCG GCTTCCTGCGCACCGCGTGGCGCAGCGAGAGAGACCCGGCCGTGCGCGCGGTGCTGGCGGAGAGCCTCTACCAGTCCAAC CCGCACGACTACCTGGGCGCGCGCACGCTGCTGGACAGCTATTCGGCCACCGCCGAGGTCTACGGCCGGCTGAAGGACGT GGCGCGGGTGCTGTCCGTGGAGGTGCCGGGCGTCAGCAGCATGGTGGAGCTGGCGGCGGGCGGAAACGCCGAGGCGCTGG CCCGGGTGCTGGAGTTGGCGGGCGCGGCGGGTACGGACGCCCAGGCCCAATCGGAGATGGCCGAGGCCCTGAGCGAGGTG GCCCGCACCGCGCCGGAGGAGCTGGTGGTGGCGCTTCGGGCCGCCAGCGCCGGTGACCGGGACGCGTGCACCACGTTGCT GGCGCGGGGGCTGGTGCAGGCGGGGCAGGCGGACCACCCCTTCTGGAAGTCGCTGCGCCGCACGCTGGGCGCTTCGGATC CACGGCTGGCGTCCTTCGCCAAGGGACTGGACTCCACGCTGTCGCAGAAGGTGGCGGAGGCCAAGGCCCCGGCGAAGACG CCGGAGGGCTTCACCCCCGTGCAGATGGTGGCGCCCGCGGGCAACGCGCCCGAATCCTCCTCCGCCGACAACCGCCCGGG GGGGTAG
Upstream 100 bases:
>100_bases TGGAAGAGCGAGCGCCCAGACGTGGACTCACGCAGCCACTCACCCTTGCCCGTCTTTTGCCCCGTTCCGCATAATGGCAC CTGACTTCCCCGGAGAGAGT
Downstream 100 bases:
>100_bases GCCGGAATCCGTTGTGTTTCTCGCGAGTTCCCTCCGGCCGGGCATGCCTCCCTGGCCGGGTGGCAGGCGGGCGTACGACA CCCAGGAAGAAGGCGGCTTT
Product: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
Products: NA
Alternate protein names: DD-carboxypeptidase; DD-peptidase; Penicillin-binding protein 4a; PBP-4a [H]
Number of amino acids: Translated: 748; Mature: 748
Protein sequence:
>748_residues MQVHRASSILAVSAIIFLSLSHAAHAAPAPAEKRADREALKSALLQVLQRAPLKASRMGVLMQSLDDGAVVFSHNADELL NPASNVKLVTSAAALASLGPEFRYDTEFLVEPELGADGKVKTLYVRGKGDPSMTTERLWGIVAELWHAGVRDVGEIVVDD SWFDAERTPPGYDQEDTDRAYMAPTGAVSLNWNAVAIYLRPGNAPGAKGVVEMDPPSDYFVVENQLTTGPRRARRVSVTS DPSGLQQKIVVRGQLPGERGGAVSVWKKIDNPPMYFGQSLKQMLVTRGVKMKGKVKLGKTSTKARMLHVSQSDTFDVLLK RLNKLSSNFVAEQLLKTMGAELRGSPGSFTKGVDVVEQFLERDVGIPRGTYVMKNGSGLNDANRFSATQLNQLLRHMVQR FPFSPEYLSSVPIAGKDGTLKYRFEGSDAVGRLRAKTGTLESVSALSGYVTSAGGERFTFSIMANDFAGRAGPIVAGLDA LGAAVAATGSSLGPSTAVAALADSGRPSGAVDDVAARIKTYLELGAQRDQRNIGFLRTAWRSERDPAVRAVLAESLYQSN PHDYLGARTLLDSYSATAEVYGRLKDVARVLSVEVPGVSSMVELAAGGNAEALARVLELAGAAGTDAQAQSEMAEALSEV ARTAPEELVVALRAASAGDRDACTTLLARGLVQAGQADHPFWKSLRRTLGASDPRLASFAKGLDSTLSQKVAEAKAPAKT PEGFTPVQMVAPAGNAPESSSADNRPGG
Sequences:
>Translated_748_residues MQVHRASSILAVSAIIFLSLSHAAHAAPAPAEKRADREALKSALLQVLQRAPLKASRMGVLMQSLDDGAVVFSHNADELL NPASNVKLVTSAAALASLGPEFRYDTEFLVEPELGADGKVKTLYVRGKGDPSMTTERLWGIVAELWHAGVRDVGEIVVDD SWFDAERTPPGYDQEDTDRAYMAPTGAVSLNWNAVAIYLRPGNAPGAKGVVEMDPPSDYFVVENQLTTGPRRARRVSVTS DPSGLQQKIVVRGQLPGERGGAVSVWKKIDNPPMYFGQSLKQMLVTRGVKMKGKVKLGKTSTKARMLHVSQSDTFDVLLK RLNKLSSNFVAEQLLKTMGAELRGSPGSFTKGVDVVEQFLERDVGIPRGTYVMKNGSGLNDANRFSATQLNQLLRHMVQR FPFSPEYLSSVPIAGKDGTLKYRFEGSDAVGRLRAKTGTLESVSALSGYVTSAGGERFTFSIMANDFAGRAGPIVAGLDA LGAAVAATGSSLGPSTAVAALADSGRPSGAVDDVAARIKTYLELGAQRDQRNIGFLRTAWRSERDPAVRAVLAESLYQSN PHDYLGARTLLDSYSATAEVYGRLKDVARVLSVEVPGVSSMVELAAGGNAEALARVLELAGAAGTDAQAQSEMAEALSEV ARTAPEELVVALRAASAGDRDACTTLLARGLVQAGQADHPFWKSLRRTLGASDPRLASFAKGLDSTLSQKVAEAKAPAKT PEGFTPVQMVAPAGNAPESSSADNRPGG >Mature_748_residues MQVHRASSILAVSAIIFLSLSHAAHAAPAPAEKRADREALKSALLQVLQRAPLKASRMGVLMQSLDDGAVVFSHNADELL NPASNVKLVTSAAALASLGPEFRYDTEFLVEPELGADGKVKTLYVRGKGDPSMTTERLWGIVAELWHAGVRDVGEIVVDD SWFDAERTPPGYDQEDTDRAYMAPTGAVSLNWNAVAIYLRPGNAPGAKGVVEMDPPSDYFVVENQLTTGPRRARRVSVTS DPSGLQQKIVVRGQLPGERGGAVSVWKKIDNPPMYFGQSLKQMLVTRGVKMKGKVKLGKTSTKARMLHVSQSDTFDVLLK RLNKLSSNFVAEQLLKTMGAELRGSPGSFTKGVDVVEQFLERDVGIPRGTYVMKNGSGLNDANRFSATQLNQLLRHMVQR FPFSPEYLSSVPIAGKDGTLKYRFEGSDAVGRLRAKTGTLESVSALSGYVTSAGGERFTFSIMANDFAGRAGPIVAGLDA LGAAVAATGSSLGPSTAVAALADSGRPSGAVDDVAARIKTYLELGAQRDQRNIGFLRTAWRSERDPAVRAVLAESLYQSN PHDYLGARTLLDSYSATAEVYGRLKDVARVLSVEVPGVSSMVELAAGGNAEALARVLELAGAAGTDAQAQSEMAEALSEV ARTAPEELVVALRAASAGDRDACTTLLARGLVQAGQADHPFWKSLRRTLGASDPRLASFAKGLDSTLSQKVAEAKAPAKT PEGFTPVQMVAPAGNAPESSSADNRPGG
Specific function: Catalyzes DD-carboxypeptidase and transpeptidation reactions [H]
COG id: COG2027
COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
Gene ontology:
Cell location: Secreted (Probable). Note=May be anchored in the membrane via a C-terminal amphiphatic alpha helix [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S13 family [H]
Homologues:
Organism=Escherichia coli, GI1789573, Length=415, Percent_Identity=26.7469879518072, Blast_Score=151, Evalue=1e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR000667 [H]
Pfam domain/function: PF02113 Peptidase_S13 [H]
EC number: =3.4.16.4 [H]
Molecular weight: Translated: 79375; Mature: 79375
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQVHRASSILAVSAIIFLSLSHAAHAAPAPAEKRADREALKSALLQVLQRAPLKASRMGV CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LMQSLDDGAVVFSHNADELLNPASNVKLVTSAAALASLGPEFRYDTEFLVEPELGADGKV HHHHCCCCCEEEECCHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCE KTLYVRGKGDPSMTTERLWGIVAELWHAGVRDVGEIVVDDSWFDAERTPPGYDQEDTDRA EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCE YMAPTGAVSLNWNAVAIYLRPGNAPGAKGVVEMDPPSDYFVVENQLTTGPRRARRVSVTS EECCCCEEEECCCEEEEEEECCCCCCCCCEEECCCCCCEEEEECCCCCCCHHHEEEEECC DPSGLQQKIVVRGQLPGERGGAVSVWKKIDNPPMYFGQSLKQMLVTRGVKMKGKVKLGKT CCCCCHHEEEEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEECEEEECCC STKARMLHVSQSDTFDVLLKRLNKLSSNFVAEQLLKTMGAELRGSPGSFTKGVDVVEQFL CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHH ERDVGIPRGTYVMKNGSGLNDANRFSATQLNQLLRHMVQRFPFSPEYLSSVPIAGKDGTL HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCE KYRFEGSDAVGRLRAKTGTLESVSALSGYVTSAGGERFTFSIMANDFAGRAGPIVAGLDA EEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHH LGAAVAATGSSLGPSTAVAALADSGRPSGAVDDVAARIKTYLELGAQRDQRNIGFLRTAW HHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH RSERDPAVRAVLAESLYQSNPHDYLGARTLLDSYSATAEVYGRLKDVARVLSVEVPGVSS CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH MVELAAGGNAEALARVLELAGAAGTDAQAQSEMAEALSEVARTAPEELVVALRAASAGDR HHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCH DACTTLLARGLVQAGQADHPFWKSLRRTLGASDPRLASFAKGLDSTLSQKVAEAKAPAKT HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC PEGFTPVQMVAPAGNAPESSSADNRPGG CCCCCCCEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure MQVHRASSILAVSAIIFLSLSHAAHAAPAPAEKRADREALKSALLQVLQRAPLKASRMGV CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LMQSLDDGAVVFSHNADELLNPASNVKLVTSAAALASLGPEFRYDTEFLVEPELGADGKV HHHHCCCCCEEEECCHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCE KTLYVRGKGDPSMTTERLWGIVAELWHAGVRDVGEIVVDDSWFDAERTPPGYDQEDTDRA EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCE YMAPTGAVSLNWNAVAIYLRPGNAPGAKGVVEMDPPSDYFVVENQLTTGPRRARRVSVTS EECCCCEEEECCCEEEEEEECCCCCCCCCEEECCCCCCEEEEECCCCCCCHHHEEEEECC DPSGLQQKIVVRGQLPGERGGAVSVWKKIDNPPMYFGQSLKQMLVTRGVKMKGKVKLGKT CCCCCHHEEEEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEECEEEECCC STKARMLHVSQSDTFDVLLKRLNKLSSNFVAEQLLKTMGAELRGSPGSFTKGVDVVEQFL CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHH ERDVGIPRGTYVMKNGSGLNDANRFSATQLNQLLRHMVQRFPFSPEYLSSVPIAGKDGTL HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCE KYRFEGSDAVGRLRAKTGTLESVSALSGYVTSAGGERFTFSIMANDFAGRAGPIVAGLDA EEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHH LGAAVAATGSSLGPSTAVAALADSGRPSGAVDDVAARIKTYLELGAQRDQRNIGFLRTAW HHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH RSERDPAVRAVLAESLYQSNPHDYLGARTLLDSYSATAEVYGRLKDVARVLSVEVPGVSS CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH MVELAAGGNAEALARVLELAGAAGTDAQAQSEMAEALSEVARTAPEELVVALRAASAGDR HHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCH DACTTLLARGLVQAGQADHPFWKSLRRTLGASDPRLASFAKGLDSTLSQKVAEAKAPAKT HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC PEGFTPVQMVAPAGNAPESSSADNRPGG CCCCCCCEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7711903; 9384377 [H]