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The map label for this gene is yraJ [C]

Identifier: 108758789

GI number: 108758789

Start: 4666798

End: 4669152

Strand: Reverse

Name: yraJ [C]

Synonym: MXAN_3883

Alternate gene names: 108758789

Gene position: 4669152-4666798 (Counterclockwise)

Preceding gene: 108761580

Following gene: 108762589

Centisome position: 51.09

GC content: 69.0

Gene sequence:

>2355_bases
ATGGCCCCCTCCCGGCTTGCAATAACCCGCGCGCCCTCATGCACGGTGCTGGCGTTATCCTTGTCGTTGGGGGCCCTGTC
GGCGGCCGCGCAAGACCCCGTGGCCGCCAACCCCTCCGCGCCGCCGATGCCCATCGTCGCGGACTTCACCTTGAACGGCG
TGCCCCGCGGCGCCACGTTTCCCATGCTGCGCGGCAGCGACGTGCTGCTCCCCGCGGCCACGCTCGAGGCCCATGGCGTG
GACCTGGTGGCGCTCGGGGGCCGCCAGGAAGTCATCGAAGGAAAGACATACATCGCCGCGCGGTCCCTGGAGCCCGAAGG
GCGCTGCACCCTGAACGAGCGGACCGTCAGCCTGTCGTGCGAGCTGCCCGCGTCCGCCTTCGGACAGACGCGCATCAACC
TCGGGCCGCAGGCGCCGTCGGACTACTCCGTCCGCGGCAGCCCCAGCGGCTTCATCAACTACGCGGCCCACGCCCGCAAC
ACCTCGCTGACCTTCTTTGGAGAGGCCGGCGCGTCGGTGGGGCGGGGCCTGTTGACGACGCAGGCGCGATGGCGGCCCGG
CTCCGTGCCCCTGCGGGGGCTCACGCAGTTGTCGTTGGACTTCCCCAAGCACATGGTGCGCGCCATCGCGGGTGAGTCCA
CGGGATTTGGCGGCGTGCTGGGTGGCGGCGCGGTGGTGGCCGGCTTCCACCTCATGCGCACTTTCGAGCTGAATCCGTAC
TTCGTGCGCAACCCGATGCAGGACTTCGCGGGTGACGTCGCCACGCCGTCCACGTTGGAGGTCTACGTCAACAACCACCT
GGTGAAGCGCACCGAGCTCCCGCCCGGCCCCTTCCGGCTGGAGAACCTCACGGTGCCCCGGGGCGAGGGCAACACGCGCT
ACGTCATCCGGGACGCGTTCGGTCGGGCGAGCGAGGTGAACACGTCCTACTATCTCAGCGGGCAGCAGCTCTCTCCGGGC
GTGGTCGACTACCGGCTTTCCGCGGGCATCGAGCGGGAGTCCGTCAATCTCTACAACTTCGACTTCGGCCGGCCCCTGCT
CCTGGGCAACTTCCGCATGGGCCTCACTTCGTGGCTGACGCCGGGCGTGCGGTTGGAGCTGGCGCCCAACGTCGTCAGCA
CCGGCGCCATGCAGCTCATCCAGTTGCCTTTCGGCCAATTGGAGCTGTCACAGGCCATCAGCCGCAGTGAGCGGCGAACG
GGGCTGGCGGCGGGCATCGTGTACGGGCTCCAGCGCCGCTGGGTGGGTGGCTCCGTCTTCGGACGGGGCATGAACGCGTC
CTACACGCACACCAGCCTCAAGCTGGATGACGACCACCCGACCCTGGAGACGGGCGGCTCGTTGTTCCTGGCGTTGGGGG
AGAGTGTCAGCGTGGGCGGGCAGGCGATGCTGTCACGCTACCAGCGGGACGGGTGGACGACGTGGCTGGGCGCCACCACC
TCCGCGCGGCTGACCGACTGGTCGACGTTGTCCTTCTCCGCAAGCCGCAGCAACTCCGAACGAGGCGGCTCCGCCATCGA
GGGGATGGTGTACCTGAACGCCATCTTCGATTCCCGCACCACGGGCACGGTGGGGCACTCCCAGGCGCTGCGCGGGAAAG
GCACCACATCGGTGGACATCGCGCGCTCGGTGCCCATGGAGGGCGGCCTGGGCTACCAGGTGCAGGGCCGGGTGGGGGCG
GTGGACCAGGCGATGGCGCGCGCCGACTTCGACTCCAACGTGGGCCGCGTCAGCGCGGGCGCGGAGTGGGTCGAAGGACG
GATGGCGGGCATGGCCGAGGTCGCCGGCGGCCTGGTGCTGATTGGCGGACGCGTGCGTCCCACGCGCGCGGTGGACCAGG
GCTACGCGCTGGTTCGCGTGAAGGGCGTGGAAGGCGTGGGCGTGCGGCTCAACAACCACGAAATCGGGCGCACGGACGCC
AGCGGCGAGCTGGTGGTGACGCGGCTCCAGGCCTACAACGCCAACCGGCTCTCGCTGGCGGACCATCAGGTGCCGCTGGA
CGTCTACATCCCCTCCACGGAGCAGGTGGTGGCCACGTACCAGCGAGGCGGCGTGGTGCTGGACTTCAAGACGCAGACGA
TCCGCGCCTACCGGGGCAAGGTGACCATCGACTCGGCGGAGGACACGCGCTGGCTGTCCTACGGTGAGATTCGCGCCGAG
AAGGACGGAGAGAAGTGGAGTTCGCCCATTGGGTGGAATGGTGAGTTCGAACTGGTGGGCCTGCCCGAAGGGCGTCTGCC
GGCGACAGTCGTCTACCCCAAGGGCCGTTGCGCGACCTCGCTGGAGGTTCCATCCCTCGAGGGCAAGGTCATTGACCTGG
GAACCGTGAGGTGTGTCCATGACGAGGCGAAATAG

Upstream 100 bases:

>100_bases
GTCCGCACGGTGGAAGTGGAGATGGAGACCGACCAGGGCGTGCTCCGTCAGACCTCCCCCGTGGAGTCTCCCGCTCCCTG
CGCTCGCTGACCGACGCACC

Downstream 100 bases:

>100_bases
GGCGGCCGCGTTCGCGGTGGCTGGCGTATGCGGGTTGCTGCCAGGACTCGCGGGTGCCGTCTGCCAGATACGCAGCACGA
TAGGGGTGAGCTTCGGCACC

Product: outer membrane fimbrial usher porin family protein

Products: NA

Alternate protein names: Fimbrial Usher Protein; Outer Membrane Usher Protein; Type I Pili Usher Protein CsuD; Outer Membrane Usher Protein FimD; Fimbrial Biogenesis Protein; P Pilus Assembly Protein Porin PapC; Fimbriae Usher Protein; Type 1 Pili Usher Protein CsuD; CsuD Protein Fimbrial Usher Proteins; Outer Membrane Usher Transmembrane Protein; P Pilus Assembly Protein Porin PapC Protein; Type I Pili; Outer Membrane Fimbrial Usher Porin Family Protein; Type 1 Pili Usher Protein FimD; Fimbrial Outer Membrane Usher Protein; PapC Family Outer Membrane Usher Protein; Porin Protein Involved In Fimbrial Biogenesis; P Pilus Assembly Fimbrial Usher Protein; Fimbriae-Like Protein; CsuD Protein; Fimbrial Biogenesis Outer Membrane Usher Protein Papc; Fimbriae-Related Protein; Fimbrial Usher Family; Outer Membrane Usher Protein FasD; Signal Peptide Protein

Number of amino acids: Translated: 784; Mature: 783

Protein sequence:

>784_residues
MAPSRLAITRAPSCTVLALSLSLGALSAAAQDPVAANPSAPPMPIVADFTLNGVPRGATFPMLRGSDVLLPAATLEAHGV
DLVALGGRQEVIEGKTYIAARSLEPEGRCTLNERTVSLSCELPASAFGQTRINLGPQAPSDYSVRGSPSGFINYAAHARN
TSLTFFGEAGASVGRGLLTTQARWRPGSVPLRGLTQLSLDFPKHMVRAIAGESTGFGGVLGGGAVVAGFHLMRTFELNPY
FVRNPMQDFAGDVATPSTLEVYVNNHLVKRTELPPGPFRLENLTVPRGEGNTRYVIRDAFGRASEVNTSYYLSGQQLSPG
VVDYRLSAGIERESVNLYNFDFGRPLLLGNFRMGLTSWLTPGVRLELAPNVVSTGAMQLIQLPFGQLELSQAISRSERRT
GLAAGIVYGLQRRWVGGSVFGRGMNASYTHTSLKLDDDHPTLETGGSLFLALGESVSVGGQAMLSRYQRDGWTTWLGATT
SARLTDWSTLSFSASRSNSERGGSAIEGMVYLNAIFDSRTTGTVGHSQALRGKGTTSVDIARSVPMEGGLGYQVQGRVGA
VDQAMARADFDSNVGRVSAGAEWVEGRMAGMAEVAGGLVLIGGRVRPTRAVDQGYALVRVKGVEGVGVRLNNHEIGRTDA
SGELVVTRLQAYNANRLSLADHQVPLDVYIPSTEQVVATYQRGGVVLDFKTQTIRAYRGKVTIDSAEDTRWLSYGEIRAE
KDGEKWSSPIGWNGEFELVGLPEGRLPATVVYPKGRCATSLEVPSLEGKVIDLGTVRCVHDEAK

Sequences:

>Translated_784_residues
MAPSRLAITRAPSCTVLALSLSLGALSAAAQDPVAANPSAPPMPIVADFTLNGVPRGATFPMLRGSDVLLPAATLEAHGV
DLVALGGRQEVIEGKTYIAARSLEPEGRCTLNERTVSLSCELPASAFGQTRINLGPQAPSDYSVRGSPSGFINYAAHARN
TSLTFFGEAGASVGRGLLTTQARWRPGSVPLRGLTQLSLDFPKHMVRAIAGESTGFGGVLGGGAVVAGFHLMRTFELNPY
FVRNPMQDFAGDVATPSTLEVYVNNHLVKRTELPPGPFRLENLTVPRGEGNTRYVIRDAFGRASEVNTSYYLSGQQLSPG
VVDYRLSAGIERESVNLYNFDFGRPLLLGNFRMGLTSWLTPGVRLELAPNVVSTGAMQLIQLPFGQLELSQAISRSERRT
GLAAGIVYGLQRRWVGGSVFGRGMNASYTHTSLKLDDDHPTLETGGSLFLALGESVSVGGQAMLSRYQRDGWTTWLGATT
SARLTDWSTLSFSASRSNSERGGSAIEGMVYLNAIFDSRTTGTVGHSQALRGKGTTSVDIARSVPMEGGLGYQVQGRVGA
VDQAMARADFDSNVGRVSAGAEWVEGRMAGMAEVAGGLVLIGGRVRPTRAVDQGYALVRVKGVEGVGVRLNNHEIGRTDA
SGELVVTRLQAYNANRLSLADHQVPLDVYIPSTEQVVATYQRGGVVLDFKTQTIRAYRGKVTIDSAEDTRWLSYGEIRAE
KDGEKWSSPIGWNGEFELVGLPEGRLPATVVYPKGRCATSLEVPSLEGKVIDLGTVRCVHDEAK
>Mature_783_residues
APSRLAITRAPSCTVLALSLSLGALSAAAQDPVAANPSAPPMPIVADFTLNGVPRGATFPMLRGSDVLLPAATLEAHGVD
LVALGGRQEVIEGKTYIAARSLEPEGRCTLNERTVSLSCELPASAFGQTRINLGPQAPSDYSVRGSPSGFINYAAHARNT
SLTFFGEAGASVGRGLLTTQARWRPGSVPLRGLTQLSLDFPKHMVRAIAGESTGFGGVLGGGAVVAGFHLMRTFELNPYF
VRNPMQDFAGDVATPSTLEVYVNNHLVKRTELPPGPFRLENLTVPRGEGNTRYVIRDAFGRASEVNTSYYLSGQQLSPGV
VDYRLSAGIERESVNLYNFDFGRPLLLGNFRMGLTSWLTPGVRLELAPNVVSTGAMQLIQLPFGQLELSQAISRSERRTG
LAAGIVYGLQRRWVGGSVFGRGMNASYTHTSLKLDDDHPTLETGGSLFLALGESVSVGGQAMLSRYQRDGWTTWLGATTS
ARLTDWSTLSFSASRSNSERGGSAIEGMVYLNAIFDSRTTGTVGHSQALRGKGTTSVDIARSVPMEGGLGYQVQGRVGAV
DQAMARADFDSNVGRVSAGAEWVEGRMAGMAEVAGGLVLIGGRVRPTRAVDQGYALVRVKGVEGVGVRLNNHEIGRTDAS
GELVVTRLQAYNANRLSLADHQVPLDVYIPSTEQVVATYQRGGVVLDFKTQTIRAYRGKVTIDSAEDTRWLSYGEIRAEK
DGEKWSSPIGWNGEFELVGLPEGRLPATVVYPKGRCATSLEVPSLEGKVIDLGTVRCVHDEAK

Specific function: Could Be Involved In The Export And Assembly Of The Putative Yrah Fimbrial Subunit Across The Outer Membrane. [C]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Integral Membrane Protein. Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 83740; Mature: 83609

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPSRLAITRAPSCTVLALSLSLGALSAAAQDPVAANPSAPPMPIVADFTLNGVPRGATF
CCCCCEEEEECCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
PMLRGSDVLLPAATLEAHGVDLVALGGRQEVIEGKTYIAARSLEPEGRCTLNERTVSLSC
CEECCCCEEEEEEEECCCCEEEEEECCCHHHHCCCEEEEEECCCCCCCEEEECEEEEEEE
ELPASAFGQTRINLGPQAPSDYSVRGSPSGFINYAAHARNTSLTFFGEAGASVGRGLLTT
CCCHHHCCCEEEECCCCCCCCCEECCCCCCEEEEEEECCCCEEEEEECCCCHHCCCEEEC
QARWRPGSVPLRGLTQLSLDFPKHMVRAIAGESTGFGGVLGGGAVVAGFHLMRTFELNPY
CCCCCCCCCCCCCHHEEEHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHEEEEEEEECCCE
FVRNPMQDFAGDVATPSTLEVYVNNHLVKRTELPPGPFRLENLTVPRGEGNTRYVIRDAF
EECCCHHHHCCCCCCCCEEEEEECCEEEEECCCCCCCEEECEEEECCCCCCEEEEEEECC
GRASEVNTSYYLSGQQLSPGVVDYRLSAGIERESVNLYNFDFGRPLLLGNFRMGLTSWLT
CCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCHHHHHHHCC
PGVRLELAPNVVSTGAMQLIQLPFGQLELSQAISRSERRTGLAAGIVYGLQRRWVGGSVF
CCEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHC
GRGMNASYTHTSLKLDDDHPTLETGGSLFLALGESVSVGGQAMLSRYQRDGWTTWLGATT
CCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCC
SARLTDWSTLSFSASRSNSERGGSAIEGMVYLNAIFDSRTTGTVGHSQALRGKGTTSVDI
CCEEECCEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHCCCCCCEEEH
ARSVPMEGGLGYQVQGRVGAVDQAMARADFDSNVGRVSAGAEWVEGRMAGMAEVAGGLVL
HCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHCCCEEE
IGGRVRPTRAVDQGYALVRVKGVEGVGVRLNNHEIGRTDASGELVVTRLQAYNANRLSLA
ECCCCCCCHHHCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEC
DHQVPLDVYIPSTEQVVATYQRGGVVLDFKTQTIRAYRGKVTIDSAEDTRWLSYGEIRAE
CCCCEEEEEECCCHHHHEEECCCCEEEEEECCEEEEECCEEEEECCCCCEEEEECEEEEC
KDGEKWSSPIGWNGEFELVGLPEGRLPATVVYPKGRCATSLEVPSLEGKVIDLGTVRCVH
CCCHHHCCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCEEEEEEEEEEEC
DEAK
CCCC
>Mature Secondary Structure 
APSRLAITRAPSCTVLALSLSLGALSAAAQDPVAANPSAPPMPIVADFTLNGVPRGATF
CCCCEEEEECCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
PMLRGSDVLLPAATLEAHGVDLVALGGRQEVIEGKTYIAARSLEPEGRCTLNERTVSLSC
CEECCCCEEEEEEEECCCCEEEEEECCCHHHHCCCEEEEEECCCCCCCEEEECEEEEEEE
ELPASAFGQTRINLGPQAPSDYSVRGSPSGFINYAAHARNTSLTFFGEAGASVGRGLLTT
CCCHHHCCCEEEECCCCCCCCCEECCCCCCEEEEEEECCCCEEEEEECCCCHHCCCEEEC
QARWRPGSVPLRGLTQLSLDFPKHMVRAIAGESTGFGGVLGGGAVVAGFHLMRTFELNPY
CCCCCCCCCCCCCHHEEEHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHEEEEEEEECCCE
FVRNPMQDFAGDVATPSTLEVYVNNHLVKRTELPPGPFRLENLTVPRGEGNTRYVIRDAF
EECCCHHHHCCCCCCCCEEEEEECCEEEEECCCCCCCEEECEEEECCCCCCEEEEEEECC
GRASEVNTSYYLSGQQLSPGVVDYRLSAGIERESVNLYNFDFGRPLLLGNFRMGLTSWLT
CCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCHHHHHHHCC
PGVRLELAPNVVSTGAMQLIQLPFGQLELSQAISRSERRTGLAAGIVYGLQRRWVGGSVF
CCEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHC
GRGMNASYTHTSLKLDDDHPTLETGGSLFLALGESVSVGGQAMLSRYQRDGWTTWLGATT
CCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCC
SARLTDWSTLSFSASRSNSERGGSAIEGMVYLNAIFDSRTTGTVGHSQALRGKGTTSVDI
CCEEECCEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHCCCCCCEEEH
ARSVPMEGGLGYQVQGRVGAVDQAMARADFDSNVGRVSAGAEWVEGRMAGMAEVAGGLVL
HCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHCCCEEE
IGGRVRPTRAVDQGYALVRVKGVEGVGVRLNNHEIGRTDASGELVVTRLQAYNANRLSLA
ECCCCCCCHHHCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEC
DHQVPLDVYIPSTEQVVATYQRGGVVLDFKTQTIRAYRGKVTIDSAEDTRWLSYGEIRAE
CCCCEEEEEECCCHHHHEEECCCCEEEEEECCEEEEECCEEEEECCCCCEEEEECEEEEC
KDGEKWSSPIGWNGEFELVGLPEGRLPATVVYPKGRCATSLEVPSLEGKVIDLGTVRCVH
CCCHHHCCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCEEEEEEEEEEEC
DEAK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA