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The map label for this gene is ydcI [H]

Identifier: 108758694

GI number: 108758694

Start: 6819742

End: 6820677

Strand: Direct

Name: ydcI [H]

Synonym: MXAN_5480

Alternate gene names: 108758694

Gene position: 6819742-6820677 (Clockwise)

Preceding gene: 108756914

Following gene: 108761595

Centisome position: 74.62

GC content: 66.03

Gene sequence:

>936_bases
GTGGATTTCGATGGGGTGAGGACCTTCATTGCAGTCGCCGACACGGGACAGTTCCAAGAGGCGGCATCAAGGCTGTCACT
GACTCAGCAAGCCGTCTCCAAGCGCATCGCCGCGCTCGAGGCCAGCCTCGGGGCGCGGTTGTTCGTCCGGGCGCCGCGCG
GCGTTCAGCTCACCATCGACGGACAGGTGTTCCTGCCTCACGCTCGAAGGCTCCTCGAAGCGGCGGAGCGGGCAGCCGAT
TCCGTGCGCCCCGGCCGCCGTCGGCTCCGTGTCGACGTGGTCAAGCCGAACCTCGGGAGCGCACGCATCCTTCGTGATTT
CCACAGCGCACATCCCGAGATTGAAATCGACGTCGTCACACATCTCTTCGACGCGAAGACCGCGTTGGCCGCTGTGCGGA
CTGGGACGATCGACGCGACGTTTCGCGCCATCACCCGGCCCGCGCAGCAACTGACCGACGGCCTCGTGGCGACCCGAGTT
CTCGACGACGCCGTGGAGTTCCTCACGAGCGATACGCACAGACTCGCGGCAGCGACTTCGCTGACGCCGGCCGAGCTCGC
GAAGCACAAGGTCTGGATGCCCTTCATCGTCCCAGGAACAGAGTGGGCCGCCTATTACGACGAGCTCGCCGCGAGATTCG
GGCTCACCATCGACACCCTCGGTCCCGACTTCGGCATCGATGCGCTCCTGGAGGTGATTGCCGGCTCCTCGAGCCTGGCC
ACACTCGTAGGTGAACACATCCGGCTGGTGTGGCCGGCCGAGTACAACCTCCGCCGCATTCCCATCCGCAACCCGATGCT
CGTGTACCCACATTCCCTGGTCTGGCGTTGCGACAACGCGCACCCCGCGCTCGCGAAGCTCCGCGCCTACCTCGACGCCC
GGAAGGACCGCTATCGGCATCCCAAGGCGTGGTCACCCCCATGGACGGACCGCTGA

Upstream 100 bases:

>100_bases
TCGCCCGAGACACAACCGCGGGTTGTGCCGCTCCCTGGCACAGCCCAATCCCGTGCGGTACCCTCCCCTGACGACACTGG
AGCAACGGAGGCGGCGCAGC

Downstream 100 bases:

>100_bases
AGGCAGACGCGTCCATGTGAGGCAGGCCCGAGCCCCCTACAAACGCTCAGCGGACCTGCGCCGGCGTCGTTACAGACTCG
GGCTTCGGCAGGTCCGCGTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MDFDGVRTFIAVADTGQFQEAASRLSLTQQAVSKRIAALEASLGARLFVRAPRGVQLTIDGQVFLPHARRLLEAAERAAD
SVRPGRRRLRVDVVKPNLGSARILRDFHSAHPEIEIDVVTHLFDAKTALAAVRTGTIDATFRAITRPAQQLTDGLVATRV
LDDAVEFLTSDTHRLAAATSLTPAELAKHKVWMPFIVPGTEWAAYYDELAARFGLTIDTLGPDFGIDALLEVIAGSSSLA
TLVGEHIRLVWPAEYNLRRIPIRNPMLVYPHSLVWRCDNAHPALAKLRAYLDARKDRYRHPKAWSPPWTDR

Sequences:

>Translated_311_residues
MDFDGVRTFIAVADTGQFQEAASRLSLTQQAVSKRIAALEASLGARLFVRAPRGVQLTIDGQVFLPHARRLLEAAERAAD
SVRPGRRRLRVDVVKPNLGSARILRDFHSAHPEIEIDVVTHLFDAKTALAAVRTGTIDATFRAITRPAQQLTDGLVATRV
LDDAVEFLTSDTHRLAAATSLTPAELAKHKVWMPFIVPGTEWAAYYDELAARFGLTIDTLGPDFGIDALLEVIAGSSSLA
TLVGEHIRLVWPAEYNLRRIPIRNPMLVYPHSLVWRCDNAHPALAKLRAYLDARKDRYRHPKAWSPPWTDR
>Mature_311_residues
MDFDGVRTFIAVADTGQFQEAASRLSLTQQAVSKRIAALEASLGARLFVRAPRGVQLTIDGQVFLPHARRLLEAAERAAD
SVRPGRRRLRVDVVKPNLGSARILRDFHSAHPEIEIDVVTHLFDAKTALAAVRTGTIDATFRAITRPAQQLTDGLVATRV
LDDAVEFLTSDTHRLAAATSLTPAELAKHKVWMPFIVPGTEWAAYYDELAARFGLTIDTLGPDFGIDALLEVIAGSSSLA
TLVGEHIRLVWPAEYNLRRIPIRNPMLVYPHSLVWRCDNAHPALAKLRAYLDARKDRYRHPKAWSPPWTDR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=177, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790262, Length=195, Percent_Identity=28.2051282051282, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI2367136, Length=299, Percent_Identity=24.4147157190635, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787601, Length=144, Percent_Identity=31.25, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787879, Length=203, Percent_Identity=28.0788177339901, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34547; Mature: 34547

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFDGVRTFIAVADTGQFQEAASRLSLTQQAVSKRIAALEASLGARLFVRAPRGVQLTID
CCCCHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEC
GQVFLPHARRLLEAAERAADSVRPGRRRLRVDVVKPNLGSARILRDFHSAHPEIEIDVVT
CEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEHHH
HLFDAKTALAAVRTGTIDATFRAITRPAQQLTDGLVATRVLDDAVEFLTSDTHRLAAATS
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
LTPAELAKHKVWMPFIVPGTEWAAYYDELAARFGLTIDTLGPDFGIDALLEVIAGSSSLA
CCHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHCCCCHHH
TLVGEHIRLVWPAEYNLRRIPIRNPMLVYPHSLVWRCDNAHPALAKLRAYLDARKDRYRH
HHHHCCEEEEECCCCCEEECCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC
PKAWSPPWTDR
CCCCCCCCCCC
>Mature Secondary Structure
MDFDGVRTFIAVADTGQFQEAASRLSLTQQAVSKRIAALEASLGARLFVRAPRGVQLTID
CCCCHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEC
GQVFLPHARRLLEAAERAADSVRPGRRRLRVDVVKPNLGSARILRDFHSAHPEIEIDVVT
CEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEHHH
HLFDAKTALAAVRTGTIDATFRAITRPAQQLTDGLVATRVLDDAVEFLTSDTHRLAAATS
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
LTPAELAKHKVWMPFIVPGTEWAAYYDELAARFGLTIDTLGPDFGIDALLEVIAGSSSLA
CCHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHCCCCHHH
TLVGEHIRLVWPAEYNLRRIPIRNPMLVYPHSLVWRCDNAHPALAKLRAYLDARKDRYRH
HHHHCCEEEEECCCCCEEECCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC
PKAWSPPWTDR
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]