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The map label for this gene is ygaU [H]

Identifier: 108756914

GI number: 108756914

Start: 6818675

End: 6818935

Strand: Direct

Name: ygaU [H]

Synonym: MXAN_5478

Alternate gene names: 108756914

Gene position: 6818675-6818935 (Clockwise)

Preceding gene: 108760046

Following gene: 108758694

Centisome position: 74.6

GC content: 58.24

Gene sequence:

>261_bases
ATGTGGGACCAGATCAAGGCCAGACATTCGAACTGGCAGAACGAGGTCATGGTCATGCTCACCGTCACGCACGAGACGCC
GTACGGCCTGTACACCGTCAAGTCGGGCGACACGCTGAGCAAGCTGGCCAAGGACATCTACGGAGACATGAAGCTGTACC
CGAAGATTTTCGAGGCCAACAAGGACCAGCTCAAGGACCCGGACAAAATCAAGGTCGGGCAGGTGCTGAAGCTGCCGCCC
AAGTCCATCGCCAACGCCTGA

Upstream 100 bases:

>100_bases
CGACGTGGCGAAGAACGTGGGCGCCAAGGTCGAGTCGCGCGAGGAGAACGGCAAGCTCATCATCAAGGGGACGGTGGACT
ACGCCTGGGACCGAGACCGG

Downstream 100 bases:

>100_bases
CATTGAGCGAGGCCAGGGGGGCACCGAGACGTACCCCCTCTGGCTCCTCAAGTCAGGTGTCGCACCAGCTTGGCGGGAAC
GCCCGCCACGAAGCTGTTCG

Product: LysM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 86

Protein sequence:

>86_residues
MWDQIKARHSNWQNEVMVMLTVTHETPYGLYTVKSGDTLSKLAKDIYGDMKLYPKIFEANKDQLKDPDKIKVGQVLKLPP
KSIANA

Sequences:

>Translated_86_residues
MWDQIKARHSNWQNEVMVMLTVTHETPYGLYTVKSGDTLSKLAKDIYGDMKLYPKIFEANKDQLKDPDKIKVGQVLKLPP
KSIANA
>Mature_86_residues
MWDQIKARHSNWQNEVMVMLTVTHETPYGLYTVKSGDTLSKLAKDIYGDMKLYPKIFEANKDQLKDPDKIKVGQVLKLPP
KSIANA

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=59, Percent_Identity=61.0169491525424, Blast_Score=73, Evalue=5e-15,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 9835; Mature: 9835

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWDQIKARHSNWQNEVMVMLTVTHETPYGLYTVKSGDTLSKLAKDIYGDMKLYPKIFEAN
CCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCHHHHHHHHHHCCHHHCHHHHCCC
KDQLKDPDKIKVGQVLKLPPKSIANA
CCCCCCCCCCCCCCEEECCCHHCCCC
>Mature Secondary Structure
MWDQIKARHSNWQNEVMVMLTVTHETPYGLYTVKSGDTLSKLAKDIYGDMKLYPKIFEAN
CCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCHHHHHHHHHHCCHHHCHHHHCCC
KDQLKDPDKIKVGQVLKLPPKSIANA
CCCCCCCCCCCCCCEEECCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]