| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is malZ [C]
Identifier: 108758596
GI number: 108758596
Start: 6690129
End: 6692498
Strand: Reverse
Name: malZ [C]
Synonym: MXAN_5374
Alternate gene names: 108758596
Gene position: 6692498-6690129 (Counterclockwise)
Preceding gene: 108759103
Following gene: 108760710
Centisome position: 73.22
GC content: 71.1
Gene sequence:
>2370_bases ATGGTTCTGACAAGGCGATGGAGCGTGGTGGTCTCCCTCACAGCGGCGCTGGCCGCGGTGACGCTCGCGGCGTGTCTGCC TCGCGCGGCGCCTCCGCCCCTGGCGCCCAGCGGCACGGTGGTCGCCGTGGCCTACGTGCGGGATGATGCGAGGCGGGCCG GCGTGGTGGCGGACGTCCCGGAAGGACTGAAGCAGCGCATCGCGGAGACCCTGGCCAGGCGCAACCTGCGCGTGGAGGTG GTGCCCTACGCGGACTACGCCGCCTACTTCGCGAAGGTGCGCGACTCGCAGCGCCGCTTCGAGATGCTGAAGGCGCTGAC GCCGGAGGCGCCGCTGCACCTGCTGGTGGAGACGCGGGTGTCGTTCTTCAGCCAGGTAGGGGGCCGCTTCTCGTGGGACA TCTCGGTGCGGACCACGGGCGCGCGGGCGGACTCCGCCATGGCGCCCACCGTCGTCACCCAGGACTACGGCGCGGCGCTT CAGTTCGACCAGCAGCGCGAGGACGATGCACAGTTGGAGGTGGCCACGCAGATCGCCGGGCAGGCGGGCGCGCTGTTCGA CTCCTTCCTTGCCTCGCCCTTCCTGGTGCCGGACACGGACGGTGGTCCGGGCACGGTGCCGGGTCTCGACGCGCCGGCCG GACCGGGCATCGAGCCGGGCACGGGCACGCCGGCCGTGCCCGAGCCCTACCGGGGTTCGTGGGAGCCGCCGGCGGGAGAC GCGGTCTACTTCGTGATGGTGGACCGCTTCTCCAATGGAGACCCGAAGAACGACGGTGCAGTGGACCTGGAGGACGCGCA GGCCTTTCACGGCGGAGACCTGCAAGGCGTCATTGACCGACTGGACGGGCTGCAGCAGCTCGGTGTCCGCACGGTGTGGC TTTCACCCGTCTTCCAGATGCGCACCGACAAGTTCCATGGGTACGGCGCCTTCCACGGTTACTGGGTGGAGGACTTCGGC CGGGTGGAGCCGCGCTTCGGAGACGAGGCCCTGCTGAAGACGCTGGCGGCGGAGTTGCGCCGCCGGGACATGCGGCTGGT GCTGGACGTGGTGCTCAACCACGTGGGGCCAGGGACGCGCCTGTCGCGTGAGCGGCCTGACTGGTTCCACGGCCTGGGTC CCATCAAGGACTGGGGCGATTCACGCGAGCTGGTGATGGGAGATGTGCACGGCCTGCCGGACCTCGCCGTGGAGAAGGAA GATGTGTACGCGCACCTGCTGGCGCATTCGCGCCGGTGGGTGGACGTGCTCCAGCCCGCGGGCTTCCGGCTGGACGCGGT GAAGCACATGCCCACCTCCTTCTGGGCTCGCTACAACGACGACTTGCGCCAGCACGCGGGGCCGGACTTCCTGCTGTTGG GGGAGATGCTGGACGGCGACCCGGTGCTGCTGTCGAACACGATGAAGGAAGGCCGCTTCGGGACGATGTTCGACTTCCCG CTGGCCTTCGCGCTGGTGGACGTCTTTTGCAGGGACCGCTCCCCGTCGCACCTGGGCGCCATCCTCTTCAACGACCGGCT ATACCCGGCGCCGGGCTCGCTCGTGACGATGGTGGACAACCACGACCTGCCCCGGGTGATGAGCGAGTGCGGTGGTGACG TGGAGCGGGTGAAGCGGGCGCTGGCGGTGCAGCTCACCGCGCGCGGCGTGCCGGCGCTCACCTACGGCACCGAGGAGGGC CTGACGGGCGCGAAGGAGCCGGAGAACCGGGGGGATATGCGCTTCACGAACCACCCGCTGCGGTCGTGGATTGGCGGGTT GCTGGCGTTGCGTCGAGGCAGTGCGGCCCTCCAGCGTGGCGAGACGATGATTCTCGCCGCCCGGGAGGACCTCTTTGCCT ACGCCCGCGTCACCGCCGACGAGGTTGTCGTCATCGCCGTGAATACCCGTGACAGCGCCGTGGACGTGCCGCTGCCCGAC GGGCTGGCCGGCGCGAAGCTGGAGCCGCTGGCCCTGGCGCCGCCGCTGGCCGCCGGGGGCGCGGGCTTCATGCGCGTGCC CGCCGGCGAGGTGGCCCTGGCGCGGCTGACGCCTCCGGCGGCGGGCGGCTTCGCCACGGCGGCGAAGCTCGCGGGTCTGC GGTGGCGGGGGCTGGGCACGCGGCGCCAGGTGGAGCTGGCCGTGGGGGACCCGTCGGTGCGGTTGGTGGGCAGCGGGCCG GAGATGGGCGGGTGGAAGCCCGAGCGCTCGCTTCGTCCAGGGCCCGAGGGCTTCGCGCTGTCGCTGCCAGTGGGCGCCGT CTTCGAGTACAAGCTCTTGCGCGGCGGCTCCCAGGGCTCTTTTGACTGGGAGGACGGCGCCAATCGTCTGCTGTTCGTGG ACGAAGGCACCGGGCCGCTGCGCCAGACGCTGGCGTGGAGCCAGCGCTGA
Upstream 100 bases:
>100_bases CGGCGTTCGGCAACTCCTTCGTGGACAGCCTGGACCAGTACAACGTTTACGTCGGCCCCGAGCGTCACTGGCACTCGGTG GTCGCGATCGAGGCCGAAGG
Downstream 100 bases:
>100_bases CCGCACCTGTTTCATTCGCCCCGCCTGGCGCGGGGCCCACTCCGAGGTTCGAAGTGAACGACCGACTCCTCCGCGCGGCG CGCCGCCAGCCCACAGACAC
Product: glycosy hydrolase family protein
Products: NA
Alternate protein names: Beta-amylase; Alpha-amylase [H]
Number of amino acids: Translated: 789; Mature: 789
Protein sequence:
>789_residues MVLTRRWSVVVSLTAALAAVTLAACLPRAAPPPLAPSGTVVAVAYVRDDARRAGVVADVPEGLKQRIAETLARRNLRVEV VPYADYAAYFAKVRDSQRRFEMLKALTPEAPLHLLVETRVSFFSQVGGRFSWDISVRTTGARADSAMAPTVVTQDYGAAL QFDQQREDDAQLEVATQIAGQAGALFDSFLASPFLVPDTDGGPGTVPGLDAPAGPGIEPGTGTPAVPEPYRGSWEPPAGD AVYFVMVDRFSNGDPKNDGAVDLEDAQAFHGGDLQGVIDRLDGLQQLGVRTVWLSPVFQMRTDKFHGYGAFHGYWVEDFG RVEPRFGDEALLKTLAAELRRRDMRLVLDVVLNHVGPGTRLSRERPDWFHGLGPIKDWGDSRELVMGDVHGLPDLAVEKE DVYAHLLAHSRRWVDVLQPAGFRLDAVKHMPTSFWARYNDDLRQHAGPDFLLLGEMLDGDPVLLSNTMKEGRFGTMFDFP LAFALVDVFCRDRSPSHLGAILFNDRLYPAPGSLVTMVDNHDLPRVMSECGGDVERVKRALAVQLTARGVPALTYGTEEG LTGAKEPENRGDMRFTNHPLRSWIGGLLALRRGSAALQRGETMILAAREDLFAYARVTADEVVVIAVNTRDSAVDVPLPD GLAGAKLEPLALAPPLAAGGAGFMRVPAGEVALARLTPPAAGGFATAAKLAGLRWRGLGTRRQVELAVGDPSVRLVGSGP EMGGWKPERSLRPGPEGFALSLPVGAVFEYKLLRGGSQGSFDWEDGANRLLFVDEGTGPLRQTLAWSQR
Sequences:
>Translated_789_residues MVLTRRWSVVVSLTAALAAVTLAACLPRAAPPPLAPSGTVVAVAYVRDDARRAGVVADVPEGLKQRIAETLARRNLRVEV VPYADYAAYFAKVRDSQRRFEMLKALTPEAPLHLLVETRVSFFSQVGGRFSWDISVRTTGARADSAMAPTVVTQDYGAAL QFDQQREDDAQLEVATQIAGQAGALFDSFLASPFLVPDTDGGPGTVPGLDAPAGPGIEPGTGTPAVPEPYRGSWEPPAGD AVYFVMVDRFSNGDPKNDGAVDLEDAQAFHGGDLQGVIDRLDGLQQLGVRTVWLSPVFQMRTDKFHGYGAFHGYWVEDFG RVEPRFGDEALLKTLAAELRRRDMRLVLDVVLNHVGPGTRLSRERPDWFHGLGPIKDWGDSRELVMGDVHGLPDLAVEKE DVYAHLLAHSRRWVDVLQPAGFRLDAVKHMPTSFWARYNDDLRQHAGPDFLLLGEMLDGDPVLLSNTMKEGRFGTMFDFP LAFALVDVFCRDRSPSHLGAILFNDRLYPAPGSLVTMVDNHDLPRVMSECGGDVERVKRALAVQLTARGVPALTYGTEEG LTGAKEPENRGDMRFTNHPLRSWIGGLLALRRGSAALQRGETMILAAREDLFAYARVTADEVVVIAVNTRDSAVDVPLPD GLAGAKLEPLALAPPLAAGGAGFMRVPAGEVALARLTPPAAGGFATAAKLAGLRWRGLGTRRQVELAVGDPSVRLVGSGP EMGGWKPERSLRPGPEGFALSLPVGAVFEYKLLRGGSQGSFDWEDGANRLLFVDEGTGPLRQTLAWSQR >Mature_789_residues MVLTRRWSVVVSLTAALAAVTLAACLPRAAPPPLAPSGTVVAVAYVRDDARRAGVVADVPEGLKQRIAETLARRNLRVEV VPYADYAAYFAKVRDSQRRFEMLKALTPEAPLHLLVETRVSFFSQVGGRFSWDISVRTTGARADSAMAPTVVTQDYGAAL QFDQQREDDAQLEVATQIAGQAGALFDSFLASPFLVPDTDGGPGTVPGLDAPAGPGIEPGTGTPAVPEPYRGSWEPPAGD AVYFVMVDRFSNGDPKNDGAVDLEDAQAFHGGDLQGVIDRLDGLQQLGVRTVWLSPVFQMRTDKFHGYGAFHGYWVEDFG RVEPRFGDEALLKTLAAELRRRDMRLVLDVVLNHVGPGTRLSRERPDWFHGLGPIKDWGDSRELVMGDVHGLPDLAVEKE DVYAHLLAHSRRWVDVLQPAGFRLDAVKHMPTSFWARYNDDLRQHAGPDFLLLGEMLDGDPVLLSNTMKEGRFGTMFDFP LAFALVDVFCRDRSPSHLGAILFNDRLYPAPGSLVTMVDNHDLPRVMSECGGDVERVKRALAVQLTARGVPALTYGTEEG LTGAKEPENRGDMRFTNHPLRSWIGGLLALRRGSAALQRGETMILAAREDLFAYARVTADEVVVIAVNTRDSAVDVPLPD GLAGAKLEPLALAPPLAAGGAGFMRVPAGEVALARLTPPAAGGFATAAKLAGLRWRGLGTRRQVELAVGDPSVRLVGSGP EMGGWKPERSLRPGPEGFALSLPVGAVFEYKLLRGGSQGSFDWEDGANRLLFVDEGTGPLRQTLAWSQR
Specific function: The precursor protein is proteolytically cleaved to produce multiform beta-amylases and a 48 kDa alpha-amylase after secretion [H]
COG id: COG0366
COG function: function code G; Glycosidases
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the glycosyl hydrolase 13 family [H]
Homologues:
Organism=Escherichia coli, GI1786604, Length=412, Percent_Identity=26.9417475728155, Blast_Score=110, Evalue=5e-25, Organism=Escherichia coli, GI1789995, Length=135, Percent_Identity=39.2592592592593, Blast_Score=104, Evalue=2e-23, Organism=Drosophila melanogaster, GI221330053, Length=189, Percent_Identity=29.6296296296296, Blast_Score=73, Evalue=8e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006048 - InterPro: IPR005085 - InterPro: IPR008985 - InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR006589 - InterPro: IPR001554 - InterPro: IPR018238 - InterPro: IPR000125 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF03423 CBM_25; PF01373 Glyco_hydro_14 [H]
EC number: =3.2.1.2; =3.2.1.1 [H]
Molecular weight: Translated: 85408; Mature: 85408
Theoretical pI: Translated: 5.58; Mature: 5.58
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51166 CBM20 ; PS50008 PIPLC_Y_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLTRRWSVVVSLTAALAAVTLAACLPRAAPPPLAPSGTVVAVAYVRDDARRAGVVADVP CEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCHHHCCCEECCH EGLKQRIAETLARRNLRVEVVPYADYAAYFAKVRDSQRRFEMLKALTPEAPLHLLVETRV HHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH SFFSQVGGRFSWDISVRTTGARADSAMAPTVVTQDYGAALQFDQQREDDAQLEVATQIAG HHHHHHCCCEEEEEEEEECCCCCCCCCCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHC QAGALFDSFLASPFLVPDTDGGPGTVPGLDAPAGPGIEPGTGTPAVPEPYRGSWEPPAGD CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AVYFVMVDRFSNGDPKNDGAVDLEDAQAFHGGDLQGVIDRLDGLQQLGVRTVWLSPVFQM EEEEEEEEECCCCCCCCCCCEEHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEECCHHHHH RTDKFHGYGAFHGYWVEDFGRVEPRFGDEALLKTLAAELRRRDMRLVLDVVLNHVGPGTR HCCCCCCCCCCCCEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LSRERPDWFHGLGPIKDWGDSRELVMGDVHGLPDLAVEKEDVYAHLLAHSRRWVDVLQPA CCCCCCCHHHCCCCHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCHHHHHHHCCC GFRLDAVKHMPTSFWARYNDDLRQHAGPDFLLLGEMLDGDPVLLSNTMKEGRFGTMFDFP CCEEHHHHHCCHHHHHHHCHHHHHHCCCCEEEECCCCCCCCEEEECCCCCCCCCCCHHHH LAFALVDVFCRDRSPSHLGAILFNDRLYPAPGSLVTMVDNHDLPRVMSECGGDVERVKRA HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHCCCHHHHHHH LAVQLTARGVPALTYGTEEGLTGAKEPENRGDMRFTNHPLRSWIGGLLALRRGSAALQRG HHHEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCC ETMILAAREDLFAYARVTADEVVVIAVNTRDSAVDVPLPDGLAGAKLEPLALAPPLAAGG CEEEEEEHHHHHHHHEECCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCEECCCCCCCC AGFMRVPAGEVALARLTPPAAGGFATAAKLAGLRWRGLGTRRQVELAVGDPSVRLVGSGP CCEEECCCCCEEEEEECCCCCCCHHHHHHHCCCEEECCCCCEEEEEEECCCCEEEEECCC EMGGWKPERSLRPGPEGFALSLPVGAVFEYKLLRGGSQGSFDWEDGANRLLFVDEGTGPL CCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHH RQTLAWSQR HHHHHCCCC >Mature Secondary Structure MVLTRRWSVVVSLTAALAAVTLAACLPRAAPPPLAPSGTVVAVAYVRDDARRAGVVADVP CEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCHHHCCCEECCH EGLKQRIAETLARRNLRVEVVPYADYAAYFAKVRDSQRRFEMLKALTPEAPLHLLVETRV HHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH SFFSQVGGRFSWDISVRTTGARADSAMAPTVVTQDYGAALQFDQQREDDAQLEVATQIAG HHHHHHCCCEEEEEEEEECCCCCCCCCCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHC QAGALFDSFLASPFLVPDTDGGPGTVPGLDAPAGPGIEPGTGTPAVPEPYRGSWEPPAGD CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AVYFVMVDRFSNGDPKNDGAVDLEDAQAFHGGDLQGVIDRLDGLQQLGVRTVWLSPVFQM EEEEEEEEECCCCCCCCCCCEEHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEECCHHHHH RTDKFHGYGAFHGYWVEDFGRVEPRFGDEALLKTLAAELRRRDMRLVLDVVLNHVGPGTR HCCCCCCCCCCCCEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LSRERPDWFHGLGPIKDWGDSRELVMGDVHGLPDLAVEKEDVYAHLLAHSRRWVDVLQPA CCCCCCCHHHCCCCHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCHHHHHHHCCC GFRLDAVKHMPTSFWARYNDDLRQHAGPDFLLLGEMLDGDPVLLSNTMKEGRFGTMFDFP CCEEHHHHHCCHHHHHHHCHHHHHHCCCCEEEECCCCCCCCEEEECCCCCCCCCCCHHHH LAFALVDVFCRDRSPSHLGAILFNDRLYPAPGSLVTMVDNHDLPRVMSECGGDVERVKRA HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHCCCHHHHHHH LAVQLTARGVPALTYGTEEGLTGAKEPENRGDMRFTNHPLRSWIGGLLALRRGSAALQRG HHHEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCC ETMILAAREDLFAYARVTADEVVVIAVNTRDSAVDVPLPDGLAGAKLEPLALAPPLAAGG CEEEEEEHHHHHHHHEECCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCEECCCCCCCC AGFMRVPAGEVALARLTPPAAGGFATAAKLAGLRWRGLGTRRQVELAVGDPSVRLVGSGP CCEEECCCCCEEEEEECCCCCCCHHHHHHHCCCEEECCCCCEEEEEEECCCCEEEEECCC EMGGWKPERSLRPGPEGFALSLPVGAVFEYKLLRGGSQGSFDWEDGANRLLFVDEGTGPL CCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHH RQTLAWSQR HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2435707; 2464578; 2438660; 1827035 [H]