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The map label for this gene is algU [H]

Identifier: 108758464

GI number: 108758464

Start: 5309362

End: 5310171

Strand: Reverse

Name: algU [H]

Synonym: MXAN_4309

Alternate gene names: 108758464

Gene position: 5310171-5309362 (Counterclockwise)

Preceding gene: 108761366

Following gene: 108759075

Centisome position: 58.1

GC content: 72.72

Gene sequence:

>810_bases
ATGTCGACGCGAACCGATGAGCAGTTGATGGAGGCCGCGCGCGCTGGCGACGACAAGGCCCTGGACGAGGTCCTCGCCCG
CCATGAGAAGCAGGTGTACCGATTTGGCCTGCGCATGTGCGGCTCCGAGGAGGACGCCATGGAGGTCCTCCAGGAGACGC
TGTTCTCCGCCTTCCGGGGCATCCACGCGTTTCGGGGGGACGCGGCGCTGTCCACCTGGTTGTACCAGGTGGCCCGCACG
CACTGCTTCCGCCTGCGCCGCCGTCGCGTCGGCGCGCCGGAGGACTTCCAGCCGCTCGACTCGCCCGCGGCCACGAACGT
CGCGGCGGAGGAGGCGACGCCGGACATGGTCTCCCACGCGCGGCAGATGGGCGAGGTGTTGCAGGCGGCCATCCTCGCGC
TGCCGGAGGCGCATCGAGAGGTGCTCATCCTCCGGGACGTGGAGGGGCTCACGGCCGAGGACGCGGCCAGCGTGGTGGGC
ATCGAGGTGCGTGCGCTCAAGAGCCGGTTGCACCGCGCGCGGCTCCAGATGCGCGAGCACCTCGCCACCCTCCTGGGGGA
GGGCGCCCACGGACAGGGCGCGGGGTGTCCGGAGCTGGCGCAGGAGCTGTCGGAGTTCGCCGCGGAGGAGGTGGACCAGG
CCGCCTGTGTGCGCCTGGAGGACCATCTGTCCCGCTGCCCCCGCTGCAGCGACGCGTGTGACGCGCTCAAGCGCACGGTG
TCCCTGTGCCGGCGCATCCCCGGGGATGAGGTCCCCGCGCCCGTGCGCGCGGCGGTACGGCAGGCGCTGTCACGCGCGCT
GCCCGCCTGA

Upstream 100 bases:

>100_bases
TCAGCACCGGCGCTAGGTCTTGCGCGATGTAACCTCCTGGCGCCATCCAGGAAGGCATCCTGGTGACTGGGCGTTCTTCC
GATGAGGAGGCGAAGGGCGG

Downstream 100 bases:

>100_bases
GCCCGCTCGCCTTGGAGCACCGGGAGCCCTGGGGCGCGGCCTACGGGGCCGAACGGGCCTCCTCGGCGGCGGGCGCCGCG
AGCGCAGCGTAGATTTCGAA

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSTRTDEQLMEAARAGDDKALDEVLARHEKQVYRFGLRMCGSEEDAMEVLQETLFSAFRGIHAFRGDAALSTWLYQVART
HCFRLRRRRVGAPEDFQPLDSPAATNVAAEEATPDMVSHARQMGEVLQAAILALPEAHREVLILRDVEGLTAEDAASVVG
IEVRALKSRLHRARLQMREHLATLLGEGAHGQGAGCPELAQELSEFAAEEVDQAACVRLEDHLSRCPRCSDACDALKRTV
SLCRRIPGDEVPAPVRAAVRQALSRALPA

Sequences:

>Translated_269_residues
MSTRTDEQLMEAARAGDDKALDEVLARHEKQVYRFGLRMCGSEEDAMEVLQETLFSAFRGIHAFRGDAALSTWLYQVART
HCFRLRRRRVGAPEDFQPLDSPAATNVAAEEATPDMVSHARQMGEVLQAAILALPEAHREVLILRDVEGLTAEDAASVVG
IEVRALKSRLHRARLQMREHLATLLGEGAHGQGAGCPELAQELSEFAAEEVDQAACVRLEDHLSRCPRCSDACDALKRTV
SLCRRIPGDEVPAPVRAAVRQALSRALPA
>Mature_268_residues
STRTDEQLMEAARAGDDKALDEVLARHEKQVYRFGLRMCGSEEDAMEVLQETLFSAFRGIHAFRGDAALSTWLYQVARTH
CFRLRRRRVGAPEDFQPLDSPAATNVAAEEATPDMVSHARQMGEVLQAAILALPEAHREVLILRDVEGLTAEDAASVVGI
EVRALKSRLHRARLQMREHLATLLGEGAHGQGAGCPELAQELSEFAAEEVDQAACVRLEDHLSRCPRCSDACDALKRTVS
LCRRIPGDEVPAPVRAAVRQALSRALPA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=174, Percent_Identity=28.735632183908, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 29555; Mature: 29424

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTRTDEQLMEAARAGDDKALDEVLARHEKQVYRFGLRMCGSEEDAMEVLQETLFSAFRG
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IHAFRGDAALSTWLYQVARTHCFRLRRRRVGAPEDFQPLDSPAATNVAAEEATPDMVSHA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHCCHHHHHHH
RQMGEVLQAAILALPEAHREVLILRDVEGLTAEDAASVVGIEVRALKSRLHRARLQMREH
HHHHHHHHHHHHHCCHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LATLLGEGAHGQGAGCPELAQELSEFAAEEVDQAACVRLEDHLSRCPRCSDACDALKRTV
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SLCRRIPGDEVPAPVRAAVRQALSRALPA
HHHHHCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STRTDEQLMEAARAGDDKALDEVLARHEKQVYRFGLRMCGSEEDAMEVLQETLFSAFRG
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IHAFRGDAALSTWLYQVARTHCFRLRRRRVGAPEDFQPLDSPAATNVAAEEATPDMVSHA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHCCHHHHHHH
RQMGEVLQAAILALPEAHREVLILRDVEGLTAEDAASVVGIEVRALKSRLHRARLQMREH
HHHHHHHHHHHHHCCHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LATLLGEGAHGQGAGCPELAQELSEFAAEEVDQAACVRLEDHLSRCPRCSDACDALKRTV
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SLCRRIPGDEVPAPVRAAVRQALSRALPA
HHHHHCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]