| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
Click here to switch to the map view.
The map label for this gene is socA [H]
Identifier: 108758238
GI number: 108758238
Start: 6502477
End: 6503223
Strand: Direct
Name: socA [H]
Synonym: MXAN_5208
Alternate gene names: 108758238
Gene position: 6502477-6503223 (Clockwise)
Preceding gene: 108757439
Following gene: 108758857
Centisome position: 71.14
GC content: 65.86
Gene sequence:
>747_bases GTGGACATGATGGCGTTCAGTGGCAAGGCGGCGTTGGTGACAGGTGGCACGCGTGGCATCGGCGCCGCCATCGTTCGGCA TCTGGCAAAGGGAGGGGCGGACGTAGCCTTCACCTATGCGAACTCTGGCGACAAAGCGGCCACGCTGGTCGGTGAACTCA AGGCACTCGGCCGACGGGCCGTGGCCATCCAGGCGGACAACGGAGACCCCGACGCCGTCCGTGGCGCAGTCGACCGCGCG GCGTCCGAGTTGGGCCGCCTGGACATCCTGGTCAACAACGCCGGCATCTTCCCTTCCGGACCGTTCGAAAAGGTCACACT CGAGGAACTCGACAGGACGCTGGCAATCCACGTTCGAGGCGTGTTCGTCGCGTCTCAAGCCGCGCTCGCGCACATGCCGC AGGGTGGCCGCATCATCTCGATTGGTTCCTGCTTCGCGCAGCGCGTGCCCTATGGCGGAGTCACGCTCTACTCGATGAGC AAGTCCGCCTTGATCGGCCTGACGAAGGGCCTGGCACGGGAAGTCGGCGAGCGCGGCATCACAGTGAACGTGATCGACCC CGGGTCGACGGATACCGACATGAATCCGGCGACCGGGCCCGCCGTCGCGGCCGAGTTGGCGCTCATGTCCCTTAAGCACT ACGCGCAGCCCGAGGACATCGCCGCCACCGTCGGGCACCTGGCGAGTGCCAGCGGGCGATTCATCACAGGCACCTCTATC GCGGTCGATGGTGGCTTTTCGGCTTGA
Upstream 100 bases:
>100_bases AAGGGCTCTGCTGGGGACATATGAACCGGTCATTAAGAAAGTCTTGACGGAGACACCCTCGCTGCGTAGACATTTTAAAC GACCGGTTCCAAAGTAGAGG
Downstream 100 bases:
>100_bases AGCCGCGACATCAAGAGGCGTTCATGGCATGGATTGTGTTGATATTGGCCGGGTGTCTGGAGATCGCCTGGGCGCTCGCG CTCAAGCGAGCCGACGGCCT
Product: SocA oxidoreductase, short chain dehydrogenase/reductase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MDMMAFSGKAALVTGGTRGIGAAIVRHLAKGGADVAFTYANSGDKAATLVGELKALGRRAVAIQADNGDPDAVRGAVDRA ASELGRLDILVNNAGIFPSGPFEKVTLEELDRTLAIHVRGVFVASQAALAHMPQGGRIISIGSCFAQRVPYGGVTLYSMS KSALIGLTKGLAREVGERGITVNVIDPGSTDTDMNPATGPAVAAELALMSLKHYAQPEDIAATVGHLASASGRFITGTSI AVDGGFSA
Sequences:
>Translated_248_residues MDMMAFSGKAALVTGGTRGIGAAIVRHLAKGGADVAFTYANSGDKAATLVGELKALGRRAVAIQADNGDPDAVRGAVDRA ASELGRLDILVNNAGIFPSGPFEKVTLEELDRTLAIHVRGVFVASQAALAHMPQGGRIISIGSCFAQRVPYGGVTLYSMS KSALIGLTKGLAREVGERGITVNVIDPGSTDTDMNPATGPAVAAELALMSLKHYAQPEDIAATVGHLASASGRFITGTSI AVDGGFSA >Mature_248_residues MDMMAFSGKAALVTGGTRGIGAAIVRHLAKGGADVAFTYANSGDKAATLVGELKALGRRAVAIQADNGDPDAVRGAVDRA ASELGRLDILVNNAGIFPSGPFEKVTLEELDRTLAIHVRGVFVASQAALAHMPQGGRIISIGSCFAQRVPYGGVTLYSMS KSALIGLTKGLAREVGERGITVNVIDPGSTDTDMNPATGPAVAAELALMSLKHYAQPEDIAATVGHLASASGRFITGTSI AVDGGFSA
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=34.6774193548387, Blast_Score=105, Evalue=3e-23, Organism=Homo sapiens, GI15277342, Length=251, Percent_Identity=34.2629482071713, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=31.404958677686, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=32.2834645669291, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI66933014, Length=186, Percent_Identity=29.0322580645161, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=29.718875502008, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI4503817, Length=196, Percent_Identity=32.6530612244898, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=32.3232323232323, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=28.2945736434109, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=35.6756756756757, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI4504505, Length=234, Percent_Identity=32.4786324786325, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=29.6442687747036, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=29.5546558704453, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=30.5699481865285, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI224922801, Length=184, Percent_Identity=31.5217391304348, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI210032110, Length=215, Percent_Identity=26.9767441860465, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI40254986, Length=201, Percent_Identity=28.8557213930348, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=30.1158301158301, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=45.1219512195122, Blast_Score=189, Evalue=1e-49, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=35.4330708661417, Blast_Score=137, Evalue=6e-34, Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=38.6178861788618, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=32.5301204819277, Blast_Score=120, Evalue=6e-29, Organism=Escherichia coli, GI1789208, Length=258, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=5e-28, Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=32.6530612244898, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=30.5220883534137, Blast_Score=103, Evalue=9e-24, Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=32.9268292682927, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=33.0677290836653, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=32.9457364341085, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI87082160, Length=261, Percent_Identity=31.4176245210728, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=30.078125, Blast_Score=69, Evalue=3e-13, Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=34.2857142857143, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=33.0645161290323, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=33.7078651685393, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=33.201581027668, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=29.4354838709677, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=30.2788844621514, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=30.0395256916996, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=32.0610687022901, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17555706, Length=244, Percent_Identity=31.9672131147541, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=30.9160305343511, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=32.1969696969697, Blast_Score=89, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17544670, Length=261, Percent_Identity=28.3524904214559, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=28.7878787878788, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17568967, Length=196, Percent_Identity=33.6734693877551, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17531453, Length=271, Percent_Identity=31.7343173431734, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=30.2681992337165, Blast_Score=78, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=29.1044776119403, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17508651, Length=254, Percent_Identity=29.5275590551181, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=28.4090909090909, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=27.5471698113208, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17538182, Length=259, Percent_Identity=30.1158301158301, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI193203117, Length=196, Percent_Identity=28.0612244897959, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=27.0833333333333, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=27.027027027027, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17562904, Length=263, Percent_Identity=26.615969581749, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193203115, Length=191, Percent_Identity=28.2722513089005, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=28.6792452830189, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17565030, Length=268, Percent_Identity=27.6119402985075, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=26.9662921348315, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17563726, Length=268, Percent_Identity=27.2388059701493, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=28.125, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=253, Percent_Identity=29.6442687747036, Blast_Score=78, Evalue=1e-15, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=33.7301587301587, Blast_Score=117, Evalue=9e-27, Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=33.7349397590361, Blast_Score=114, Evalue=7e-26, Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=32.2834645669291, Blast_Score=110, Evalue=7e-25, Organism=Drosophila melanogaster, GI24644339, Length=262, Percent_Identity=31.2977099236641, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=30.6772908366534, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=31.3492063492063, Blast_Score=97, Evalue=9e-21, Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=30.2788844621514, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=31.2, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI116007236, Length=206, Percent_Identity=31.0679611650485, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI116007234, Length=232, Percent_Identity=31.4655172413793, Blast_Score=78, Evalue=4e-15, Organism=Drosophila melanogaster, GI24641232, Length=207, Percent_Identity=28.9855072463768, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI21357673, Length=192, Percent_Identity=26.5625, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI281364892, Length=217, Percent_Identity=29.0322580645161, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI221331218, Length=200, Percent_Identity=30, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI18859837, Length=238, Percent_Identity=29.8319327731092, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24665243, Length=199, Percent_Identity=30.1507537688442, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007238, Length=192, Percent_Identity=30.2083333333333, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574402, Length=197, Percent_Identity=28.4263959390863, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24584744, Length=197, Percent_Identity=28.4263959390863, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI221331216, Length=201, Percent_Identity=30.3482587064677, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI24665247, Length=200, Percent_Identity=30.5, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI17737361, Length=258, Percent_Identity=31.0077519379845, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI161076933, Length=245, Percent_Identity=26.9387755102041, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI116007232, Length=183, Percent_Identity=31.1475409836066, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24584748, Length=240, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21355631, Length=173, Percent_Identity=30.0578034682081, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24656154, Length=207, Percent_Identity=28.9855072463768, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI19922628, Length=207, Percent_Identity=28.9855072463768, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25262; Mature: 25262
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDMMAFSGKAALVTGGTRGIGAAIVRHLAKGGADVAFTYANSGDKAATLVGELKALGRRA CCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE VAIQADNGDPDAVRGAVDRAASELGRLDILVNNAGIFPSGPFEKVTLEELDRTLAIHVRG EEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHCCEEEEEEEE VFVASQAALAHMPQGGRIISIGSCFAQRVPYGGVTLYSMSKSALIGLTKGLAREVGERGI EEEEHHHHHHHCCCCCEEEEEHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC TVNVIDPGSTDTDMNPATGPAVAAELALMSLKHYAQPEDIAATVGHLASASGRFITGTSI EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEECCEE AVDGGFSA EECCCCCC >Mature Secondary Structure MDMMAFSGKAALVTGGTRGIGAAIVRHLAKGGADVAFTYANSGDKAATLVGELKALGRRA CCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE VAIQADNGDPDAVRGAVDRAASELGRLDILVNNAGIFPSGPFEKVTLEELDRTLAIHVRG EEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHCCEEEEEEEE VFVASQAALAHMPQGGRIISIGSCFAQRVPYGGVTLYSMSKSALIGLTKGLAREVGERGI EEEEHHHHHHHCCCCCEEEEEHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC TVNVIDPGSTDTDMNPATGPAVAAELALMSLKHYAQPEDIAATVGHLASASGRFITGTSI EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEECCEE AVDGGFSA EECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]