| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is hrpA [C]
Identifier: 108758108
GI number: 108758108
Start: 2482119
End: 2485034
Strand: Direct
Name: hrpA [C]
Synonym: MXAN_2148
Alternate gene names: 108758108
Gene position: 2482119-2485034 (Clockwise)
Preceding gene: 108763722
Following gene: 108761197
Centisome position: 27.16
GC content: 72.36
Gene sequence:
>2916_bases ATGCGGGCGACGGCTCCCTCTAGCATGCGTCCTTTGGACGGAGCGGTGCTCTCGGCTTGGACTACCGCGTCGTGGAGTTG GGCTTCCTCGCGCCGCAGGCCACGCTCACCGGGCGGCGCTGGACTCGCTAGCCCGATGCCCGAGTACGTCATTCCCTGGC GCACACGGTTGCCTGCCTCCCCAGGGCCGGGCTTGCGCGGGCGAATCGCTTCCCCTGGACACCGCCCATGCGTATCACTG GCCTTCGTGCGTACGCCCACCGACCGATACCTGCCGCCGCGCCCCGACGCTTCCTCCGCCGTCACGTCCCAGCGCGGGCG GGTGGTGGTCATCGCGCCCACGCGCGCCGCGTGCGAAACCATCGAGCTGGCGCTTGGGCTGGAGCTGCGCACGTACCTGG AGGAGCACCACGGCGAGCGCCTCCTCGAGCTGGCCCGGAGCGGTCAGGGGTTTGGCATCGTCGCGGGTACTGGCACGGGC AAGACGCTCGCCATCCGCTCCATCGCGGAGGAGCTCGTGGGCCGGCGGCCCCTGCGGGTGGCGGTGGTCAACCGCGAGCG GGAGGCCACCGCGCAGACGCCGCTCGCGGATGTGGCCATCGTCACCACCGGCATCGCGCGGCGCTGGTTCCAGGGCGGCG CCATCCGGCGCGAGGACACGCTCATCGTGGATGAAATCCACCAGACCTCCGCCGAACTGGAGCTGTGCCTGGCCTTGGGC AAGCGCGCGGGCTGCCGCTTCATCTGGCTGTCCGCCACCGTGGACCCGGCCTTCTACGCGCGCTACCTGGACAGCGCGGA CGTGCTCCAGGTGTCCTCCTTCGAACCGAGGAAGGCGGCCCGGGTGGAGGTGGAGCGCCGTCAGCCGCTGTCCTTCCTCG ACGAGGACTTCCTGCGGGAGGTGCAGCAGCAGGGGCGCGGCGTGGGCGTGTTCCTGGCCACGCGCGCGGGCGTGGAGGAG GCGGCGGCCCACGTGCGCGCGAACGCGCCGGAGCTCCATGCGGCGCACTACCACGGCGGCGAACCGCTGCGTGCCATCCG TCCCTTCCTGGAGGGCACGGCGCCCCGGCCCTTCGTCCTCGCGATGACGGCGGCGGGGCAGAGCGCGCTCAACGTGCCGG GGCTGGACACGGTCGTCATCGACGACATGCGCTTCACGAACCTGGTGGAGCGCGGCCGCAACGTCCTGACCCGCGTGCAC CTGGGCAACAACGAACTCTTGCAGATGGCGGGGCGCGTGCACGGGCGGGTGGAGGGCGGGCGCGTCTTCATCCTGAGCGA CCGGCCGCTACACTTCGCCTCATTGAGGCCCACCGAGCCCGAGTTCCAACTCGCGGGCGAGCCGGAGCGGGTGGCGCTCA CCGCCGCGGCCCTGGGCGTGCGGGCGGATGAGTTGGATTTGCCCGTGCCACTGGACCGCAATGCCTATCGCCGGGCGCTC GCGAAGTTGCAGGCGCGCGGCATCGTGGACGCGGAAGGCCGGCTGTCCGACTACGGCCGCGCGGTGGAGGCCCTGCCCGT GGAGCGTCCGTGGGCGGAGCTCATCGTCAACGCGGAGGAGGCGCTGCTGCCGTTGCTCGCGGTGTGCAGCTCGGTGGAGT CGCTGCACAGGATGACGCGCGAGGAGCGGAACCTGGACGGGCTGCTCGTGCCCGGCAGCGACCACCTGACCGCGTACAAC CTCTACGCCGAGGCCTTCCGTGAAGCGGGCACGGTGGGGGAGGTGCAGGGGCTGCCGCGCCACGTCTTCCATGCGGAGAA GCTCGCGGCCTGGGCGGAGGTGCGTGGGGTGCTGGTGAAGGCCCTGGAGGACGCGGCGCTCGCGATGGCGAGCGTGTACC GGAGCGTGGGGCTGGCGCTGCCCGCGCGCATGCCCTTTGCGGACCCGCGCGCCCACCGGCGTTTCTGCGACCTGCTCGCA CGCTTCATGCCCTTCGACCTGGTCATCGACGAGCGCACCGCCTGGGGCGAGGTCGCGCGCGTGTCGAAGACGAGCGTGTG TGGCAACCTGGGCGCGGTGGCGGGCACGCTGCGCTACTTCGCCGACCGCAACGGCGACTCGCAGGCCGGCATCGAGGGGA CCCAGCTTCCCCAGTCACTGCTGCGCCGCTACGCCCGCCGCCATGCGGCGGCGCCGGTGTACGACGTGCGCTTCCGCTCG GTCGTGCTCGAAAAGCGGGTGGACTATTTCGGCTTCGAGCTCGAACGGGAAGTGGAGGTGCTGCGCGCCTGGGGGCCGGA GCTCGCCAAGGCGGCCCGGCACGCGCTCGCCGAGGCGCTGGCGCAGGGCGAAGCACCCCATCCCGCGGTGGACCGGCACC GGGTCGCCATCGCCGAGGTGCGCGAGCTGTGGCGACGCTCGGGAGGGACCACCGCGCCGCTGGGGTTGTCGGAGCTGACC GCGCTCTACGAGGCGCAGTTGGATGGGGTGGACACGCTCGACGACTTCAAGGAGCGCCCGCTGCGGCTCGAACTGGACGC GCTCGTGCCGCCCGAGATGCGTCAGGCGCTCCTGGCGCTCCCGGACACCGTGGAGGTGCGCGAGCAGGCGGTGCCGCTCG AATACGACGTGGAGAGACTGTCGGACGGAGCCCCGCGAGGCGTGGTGCGGCTGCACCTGCCGGAGAAGCTCGCGCGCACG CTGGTGGAGGAGGAGCTGCCGCTGCTCGACCGTCCCCTGCGCTTCAGCGTGGCCAGGGGCCGGAGGGGCGTGCTCGAGGC TCGCTCGCTCCTCGAGCTCCAGGAGCTGCTCGACCGGCCCTGGATGCCGGACGAGATCGCCGAGGCCACCCGTGAGCGTT CACTCCCGCGACAGGACCGGGAGCGCGGCGCCCCCAGGCCTGGGGAGTACCGGGGGCATCACGGCAAGGCACCCCGGAAT GGAAGACGACCGGGCGGCGGCGGACGGCGGCGCTGA
Upstream 100 bases:
>100_bases CCGGGTTCCTGGTCGCAAATCTTCAGCAGGTCCAGTCGCGCTCACTTCCATCGCCTCGTGATGCTTCGTTGATGGATGAG AACGCGACGCAGGCTCCCGC
Downstream 100 bases:
>100_bases CCTGACGCACGGGCAGGGCGCTCATCACGCATGGGGGGCCGTCCAGCGCCGGACGGTGGATACCGCTCGTCGAGCACCTC ATGGGTGGAGCGCATCTCGA
Product: DEAD/DEAH family helicase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 971; Mature: 971
Protein sequence:
>971_residues MRATAPSSMRPLDGAVLSAWTTASWSWASSRRRPRSPGGAGLASPMPEYVIPWRTRLPASPGPGLRGRIASPGHRPCVSL AFVRTPTDRYLPPRPDASSAVTSQRGRVVVIAPTRAACETIELALGLELRTYLEEHHGERLLELARSGQGFGIVAGTGTG KTLAIRSIAEELVGRRPLRVAVVNREREATAQTPLADVAIVTTGIARRWFQGGAIRREDTLIVDEIHQTSAELELCLALG KRAGCRFIWLSATVDPAFYARYLDSADVLQVSSFEPRKAARVEVERRQPLSFLDEDFLREVQQQGRGVGVFLATRAGVEE AAAHVRANAPELHAAHYHGGEPLRAIRPFLEGTAPRPFVLAMTAAGQSALNVPGLDTVVIDDMRFTNLVERGRNVLTRVH LGNNELLQMAGRVHGRVEGGRVFILSDRPLHFASLRPTEPEFQLAGEPERVALTAAALGVRADELDLPVPLDRNAYRRAL AKLQARGIVDAEGRLSDYGRAVEALPVERPWAELIVNAEEALLPLLAVCSSVESLHRMTREERNLDGLLVPGSDHLTAYN LYAEAFREAGTVGEVQGLPRHVFHAEKLAAWAEVRGVLVKALEDAALAMASVYRSVGLALPARMPFADPRAHRRFCDLLA RFMPFDLVIDERTAWGEVARVSKTSVCGNLGAVAGTLRYFADRNGDSQAGIEGTQLPQSLLRRYARRHAAAPVYDVRFRS VVLEKRVDYFGFELEREVEVLRAWGPELAKAARHALAEALAQGEAPHPAVDRHRVAIAEVRELWRRSGGTTAPLGLSELT ALYEAQLDGVDTLDDFKERPLRLELDALVPPEMRQALLALPDTVEVREQAVPLEYDVERLSDGAPRGVVRLHLPEKLART LVEEELPLLDRPLRFSVARGRRGVLEARSLLELQELLDRPWMPDEIAEATRERSLPRQDRERGAPRPGEYRGHHGKAPRN GRRPGGGGRRR
Sequences:
>Translated_971_residues MRATAPSSMRPLDGAVLSAWTTASWSWASSRRRPRSPGGAGLASPMPEYVIPWRTRLPASPGPGLRGRIASPGHRPCVSL AFVRTPTDRYLPPRPDASSAVTSQRGRVVVIAPTRAACETIELALGLELRTYLEEHHGERLLELARSGQGFGIVAGTGTG KTLAIRSIAEELVGRRPLRVAVVNREREATAQTPLADVAIVTTGIARRWFQGGAIRREDTLIVDEIHQTSAELELCLALG KRAGCRFIWLSATVDPAFYARYLDSADVLQVSSFEPRKAARVEVERRQPLSFLDEDFLREVQQQGRGVGVFLATRAGVEE AAAHVRANAPELHAAHYHGGEPLRAIRPFLEGTAPRPFVLAMTAAGQSALNVPGLDTVVIDDMRFTNLVERGRNVLTRVH LGNNELLQMAGRVHGRVEGGRVFILSDRPLHFASLRPTEPEFQLAGEPERVALTAAALGVRADELDLPVPLDRNAYRRAL AKLQARGIVDAEGRLSDYGRAVEALPVERPWAELIVNAEEALLPLLAVCSSVESLHRMTREERNLDGLLVPGSDHLTAYN LYAEAFREAGTVGEVQGLPRHVFHAEKLAAWAEVRGVLVKALEDAALAMASVYRSVGLALPARMPFADPRAHRRFCDLLA RFMPFDLVIDERTAWGEVARVSKTSVCGNLGAVAGTLRYFADRNGDSQAGIEGTQLPQSLLRRYARRHAAAPVYDVRFRS VVLEKRVDYFGFELEREVEVLRAWGPELAKAARHALAEALAQGEAPHPAVDRHRVAIAEVRELWRRSGGTTAPLGLSELT ALYEAQLDGVDTLDDFKERPLRLELDALVPPEMRQALLALPDTVEVREQAVPLEYDVERLSDGAPRGVVRLHLPEKLART LVEEELPLLDRPLRFSVARGRRGVLEARSLLELQELLDRPWMPDEIAEATRERSLPRQDRERGAPRPGEYRGHHGKAPRN GRRPGGGGRRR >Mature_971_residues MRATAPSSMRPLDGAVLSAWTTASWSWASSRRRPRSPGGAGLASPMPEYVIPWRTRLPASPGPGLRGRIASPGHRPCVSL AFVRTPTDRYLPPRPDASSAVTSQRGRVVVIAPTRAACETIELALGLELRTYLEEHHGERLLELARSGQGFGIVAGTGTG KTLAIRSIAEELVGRRPLRVAVVNREREATAQTPLADVAIVTTGIARRWFQGGAIRREDTLIVDEIHQTSAELELCLALG KRAGCRFIWLSATVDPAFYARYLDSADVLQVSSFEPRKAARVEVERRQPLSFLDEDFLREVQQQGRGVGVFLATRAGVEE AAAHVRANAPELHAAHYHGGEPLRAIRPFLEGTAPRPFVLAMTAAGQSALNVPGLDTVVIDDMRFTNLVERGRNVLTRVH LGNNELLQMAGRVHGRVEGGRVFILSDRPLHFASLRPTEPEFQLAGEPERVALTAAALGVRADELDLPVPLDRNAYRRAL AKLQARGIVDAEGRLSDYGRAVEALPVERPWAELIVNAEEALLPLLAVCSSVESLHRMTREERNLDGLLVPGSDHLTAYN LYAEAFREAGTVGEVQGLPRHVFHAEKLAAWAEVRGVLVKALEDAALAMASVYRSVGLALPARMPFADPRAHRRFCDLLA RFMPFDLVIDERTAWGEVARVSKTSVCGNLGAVAGTLRYFADRNGDSQAGIEGTQLPQSLLRRYARRHAAAPVYDVRFRS VVLEKRVDYFGFELEREVEVLRAWGPELAKAARHALAEALAQGEAPHPAVDRHRVAIAEVRELWRRSGGTTAPLGLSELT ALYEAQLDGVDTLDDFKERPLRLELDALVPPEMRQALLALPDTVEVREQAVPLEYDVERLSDGAPRGVVRLHLPEKLART LVEEELPLLDRPLRFSVARGRRGVLEARSLLELQELLDRPWMPDEIAEATRERSLPRQDRERGAPRPGEYRGHHGKAPRN GRRPGGGGRRR
Specific function: Not Yet Known. [C]
COG id: COG1643
COG function: function code L; HrpA-like helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 107018; Mature: 107018
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRATAPSSMRPLDGAVLSAWTTASWSWASSRRRPRSPGGAGLASPMPEYVIPWRTRLPAS CCCCCCCCCCCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCC PGPGLRGRIASPGHRPCVSLAFVRTPTDRYLPPRPDASSAVTSQRGRVVVIAPTRAACET CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEECCHHHHHH IELALGLELRTYLEEHHGERLLELARSGQGFGIVAGTGTGKTLAIRSIAEELVGRRPLRV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE AVVNREREATAQTPLADVAIVTTGIARRWFQGGAIRREDTLIVDEIHQTSAELELCLALG EEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC KRAGCRFIWLSATVDPAFYARYLDSADVLQVSSFEPRKAARVEVERRQPLSFLDEDFLRE CCCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCCCCHHHHEEHHHCCCHHHHHHHHHHH VQQQGRGVGVFLATRAGVEEAAAHVRANAPELHAAHYHGGEPLRAIRPFLEGTAPRPFVL HHHCCCCEEEEEEECCCHHHHHHHHHCCCCCCEEHHCCCCCHHHHHHHHHCCCCCCCEEE AMTAAGQSALNVPGLDTVVIDDMRFTNLVERGRNVLTRVHLGNNELLQMAGRVHGRVEGG EEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHCCEECCC RVFILSDRPLHFASLRPTEPEFQLAGEPERVALTAAALGVRADELDLPVPLDRNAYRRAL EEEEECCCCCEEECCCCCCCCCEECCCCCCEEEEHHHHCCCCCCCCCCCCCCCHHHHHHH AKLQARGIVDAEGRLSDYGRAVEALPVERPWAELIVNAEEALLPLLAVCSSVESLHRMTR HHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH EERNLDGLLVPGSDHLTAYNLYAEAFREAGTVGEVQGLPRHVFHAEKLAAWAEVRGVLVK HHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHH ALEDAALAMASVYRSVGLALPARMPFADPRAHRRFCDLLARFMPFDLVIDERTAWGEVAR HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH VSKTSVCGNLGAVAGTLRYFADRNGDSQAGIEGTQLPQSLLRRYARRHAAAPVYDVRFRS HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH VVLEKRVDYFGFELEREVEVLRAWGPELAKAARHALAEALAQGEAPHPAVDRHRVAIAEV HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH RELWRRSGGTTAPLGLSELTALYEAQLDGVDTLDDFKERPLRLELDALVPPEMRQALLAL HHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHCC PDTVEVREQAVPLEYDVERLSDGAPRGVVRLHLPEKLARTLVEEELPLLDRPLRFSVARG CCHHHHHHHCCCCHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHCC RRGVLEARSLLELQELLDRPWMPDEIAEATRERSLPRQDRERGAPRPGEYRGHHGKAPRN CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCC GRRPGGGGRRR CCCCCCCCCCC >Mature Secondary Structure MRATAPSSMRPLDGAVLSAWTTASWSWASSRRRPRSPGGAGLASPMPEYVIPWRTRLPAS CCCCCCCCCCCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCC PGPGLRGRIASPGHRPCVSLAFVRTPTDRYLPPRPDASSAVTSQRGRVVVIAPTRAACET CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEECCHHHHHH IELALGLELRTYLEEHHGERLLELARSGQGFGIVAGTGTGKTLAIRSIAEELVGRRPLRV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE AVVNREREATAQTPLADVAIVTTGIARRWFQGGAIRREDTLIVDEIHQTSAELELCLALG EEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC KRAGCRFIWLSATVDPAFYARYLDSADVLQVSSFEPRKAARVEVERRQPLSFLDEDFLRE CCCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCCCCHHHHEEHHHCCCHHHHHHHHHHH VQQQGRGVGVFLATRAGVEEAAAHVRANAPELHAAHYHGGEPLRAIRPFLEGTAPRPFVL HHHCCCCEEEEEEECCCHHHHHHHHHCCCCCCEEHHCCCCCHHHHHHHHHCCCCCCCEEE AMTAAGQSALNVPGLDTVVIDDMRFTNLVERGRNVLTRVHLGNNELLQMAGRVHGRVEGG EEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHCCEECCC RVFILSDRPLHFASLRPTEPEFQLAGEPERVALTAAALGVRADELDLPVPLDRNAYRRAL EEEEECCCCCEEECCCCCCCCCEECCCCCCEEEEHHHHCCCCCCCCCCCCCCCHHHHHHH AKLQARGIVDAEGRLSDYGRAVEALPVERPWAELIVNAEEALLPLLAVCSSVESLHRMTR HHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH EERNLDGLLVPGSDHLTAYNLYAEAFREAGTVGEVQGLPRHVFHAEKLAAWAEVRGVLVK HHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHH ALEDAALAMASVYRSVGLALPARMPFADPRAHRRFCDLLARFMPFDLVIDERTAWGEVAR HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH VSKTSVCGNLGAVAGTLRYFADRNGDSQAGIEGTQLPQSLLRRYARRHAAAPVYDVRFRS HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH VVLEKRVDYFGFELEREVEVLRAWGPELAKAARHALAEALAQGEAPHPAVDRHRVAIAEV HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH RELWRRSGGTTAPLGLSELTALYEAQLDGVDTLDDFKERPLRLELDALVPPEMRQALLAL HHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHCC PDTVEVREQAVPLEYDVERLSDGAPRGVVRLHLPEKLARTLVEEELPLLDRPLRFSVARG CCHHHHHHHCCCCHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHCC RRGVLEARSLLELQELLDRPWMPDEIAEATRERSLPRQDRERGAPRPGEYRGHHGKAPRN CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCC GRRPGGGGRRR CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA