BacMap

Definition	Myxococcus xanthus DK 1622 chromosome, complete genome.
Accession	NC_008095
Length	9,139,763

Click here to switch to the map view.

The map label for this gene is yciK [C]

Identifier: 108757190

GI number: 108757190

Start: 981825

End: 982667

Strand: Reverse

Name: yciK [C]

Synonym: MXAN_0865

Alternate gene names: 108757190

Gene position: 982667-981825 (Counterclockwise)

Preceding gene: 108757994

Following gene: 108758218

Centisome position: 10.75

GC content: 69.63

Gene sequence:

>843_bases
ATGGATGGGAAGGTGTGCCTCATCACCGGGGCCACCGGCGGCATCGGCCTGGAGGCCGCCAAGGCGCTCGCGCGCATGGG
CGCCACGGTGGTGCTGGTGGGCCGGGACGCGGGCCGCACCGAGGCGGCCGTGGCCGCCGTGAAGGAGGCCGCCCCCAGCG
CCCAGGTGGACTGGCTCCGCGCCGACCTCGCCTCCCTGAAGTCCGTGCGGGAGCTGGCGCAGACCTTCCGCTCCCGCTAC
CCGCGCCTGGACGTGCTGCTCAACAACGCGGGGCTCATCATCGACCGGCGGCAGGTGACGGAGGACGGGCTGGAGGCCAC
CATGGCCACCAACCACTTCGCGCCCTTCCTCCTGACGAACCTGCTGCTGGACGTGATGAAGGCCACCGGCCCGGCCCGCA
TCATCAACGTCTCGTCCGATGCCCACGCCGCGGGCAAGCTCGACTTCGATGACCTGCAGAGCGAGCGCGGCTTCATCGGC
TTCCGCGTGTACGGCACGTCGAAGCTGGCCAACATCCTGTTCACCCGCGCGCTGGCGAAGCGGCTGGAGGGTACGCAGGT
GACGACCAACGCCCTGCACCCCGGCGTGGTGCGCACGGGCTTCGGTCACAACACCCAGGGCTTCTTCCGCCACCTCGTCA
AGCTGGGCGCGGCGTTCATGATTTCGGCGGAGAAGGGAGCGCGGACGTCCGTGTATCTGGCGTCCTCGCCCGAAGTGGAG
GCAGTGTCCGGGCAGTACTTCTACAAATGCCGTCCGAAGAAGCCGTCCTCCGCCGCGCGGAACGACGCGCTCGCGGAGCG
GCTCTGGCAGGTGAGCGAGCAGCTCACGGGAGTCAAGGGATGA

Upstream 100 bases:

>100_bases
CCCCCGCGCGCCTGCTCAAGAGCAAGCGCGCGGGCGGACTCCAGCGTATAGAAGGCGTCCTTTCGCGACGGAGGACGCCT
TTTTGACTTCACAGACGCGC

Downstream 100 bases:

>100_bases
TCGACCTCTACACGTTCGCGACGCCCAACGGACAGAAGGTATCCATCGCCCTGGAGGAGCTGGGCCTCCAGTACAAGACG
CATGTGGTGGACATCACCAA

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MDGKVCLITGATGGIGLEAAKALARMGATVVLVGRDAGRTEAAVAAVKEAAPSAQVDWLRADLASLKSVRELAQTFRSRY
PRLDVLLNNAGLIIDRRQVTEDGLEATMATNHFAPFLLTNLLLDVMKATGPARIINVSSDAHAAGKLDFDDLQSERGFIG
FRVYGTSKLANILFTRALAKRLEGTQVTTNALHPGVVRTGFGHNTQGFFRHLVKLGAAFMISAEKGARTSVYLASSPEVE
AVSGQYFYKCRPKKPSSAARNDALAERLWQVSEQLTGVKG

Sequences:

>Translated_280_residues
MDGKVCLITGATGGIGLEAAKALARMGATVVLVGRDAGRTEAAVAAVKEAAPSAQVDWLRADLASLKSVRELAQTFRSRY
PRLDVLLNNAGLIIDRRQVTEDGLEATMATNHFAPFLLTNLLLDVMKATGPARIINVSSDAHAAGKLDFDDLQSERGFIG
FRVYGTSKLANILFTRALAKRLEGTQVTTNALHPGVVRTGFGHNTQGFFRHLVKLGAAFMISAEKGARTSVYLASSPEVE
AVSGQYFYKCRPKKPSSAARNDALAERLWQVSEQLTGVKG
>Mature_280_residues
MDGKVCLITGATGGIGLEAAKALARMGATVVLVGRDAGRTEAAVAAVKEAAPSAQVDWLRADLASLKSVRELAQTFRSRY
PRLDVLLNNAGLIIDRRQVTEDGLEATMATNHFAPFLLTNLLLDVMKATGPARIINVSSDAHAAGKLDFDDLQSERGFIG
FRVYGTSKLANILFTRALAKRLEGTQVTTNALHPGVVRTGFGHNTQGFFRHLVKLGAAFMISAEKGARTSVYLASSPEVE
AVSGQYFYKCRPKKPSSAARNDALAERLWQVSEQLTGVKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI10190746, Length=296, Percent_Identity=44.5945945945946, Blast_Score=216, Evalue=1e-56,
Organism=Homo sapiens, GI186928839, Length=279, Percent_Identity=43.7275985663082, Blast_Score=208, Evalue=4e-54,
Organism=Homo sapiens, GI225579078, Length=285, Percent_Identity=43.5087719298246, Blast_Score=198, Evalue=5e-51,
Organism=Homo sapiens, GI166795268, Length=278, Percent_Identity=40.6474820143885, Blast_Score=191, Evalue=6e-49,
Organism=Homo sapiens, GI7706523, Length=281, Percent_Identity=39.1459074733096, Blast_Score=190, Evalue=1e-48,
Organism=Homo sapiens, GI146231950, Length=284, Percent_Identity=41.1971830985916, Blast_Score=180, Evalue=1e-45,
Organism=Homo sapiens, GI193804850, Length=282, Percent_Identity=38.6524822695035, Blast_Score=172, Evalue=4e-43,
Organism=Homo sapiens, GI19923931, Length=247, Percent_Identity=43.7246963562753, Blast_Score=167, Evalue=7e-42,
Organism=Homo sapiens, GI4502601, Length=282, Percent_Identity=30.8510638297872, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI4502599, Length=284, Percent_Identity=30.6338028169014, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI72534732, Length=150, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI13375997, Length=150, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI7705421, Length=233, Percent_Identity=26.1802575107296, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI20149619, Length=210, Percent_Identity=29.5238095238095, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI31542939, Length=204, Percent_Identity=32.3529411764706, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1787526, Length=206, Percent_Identity=30.0970873786408, Blast_Score=79, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17558006, Length=286, Percent_Identity=33.5664335664336, Blast_Score=158, Evalue=4e-39,
Organism=Caenorhabditis elegans, GI17532805, Length=288, Percent_Identity=35.7638888888889, Blast_Score=153, Evalue=8e-38,
Organism=Caenorhabditis elegans, GI193207620, Length=290, Percent_Identity=31.7241379310345, Blast_Score=147, Evalue=4e-36,
Organism=Caenorhabditis elegans, GI17532791, Length=291, Percent_Identity=32.3024054982818, Blast_Score=140, Evalue=8e-34,
Organism=Caenorhabditis elegans, GI71992402, Length=288, Percent_Identity=33.3333333333333, Blast_Score=136, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17535059, Length=292, Percent_Identity=32.5342465753425, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI72001364, Length=289, Percent_Identity=31.4878892733564, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI115533174, Length=279, Percent_Identity=32.258064516129, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI115533172, Length=279, Percent_Identity=31.5412186379928, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI32565532, Length=207, Percent_Identity=31.8840579710145, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17505416, Length=266, Percent_Identity=30.0751879699248, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17562908, Length=224, Percent_Identity=33.9285714285714, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=212, Percent_Identity=33.4905660377358, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=209, Percent_Identity=34.4497607655502, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17531453, Length=230, Percent_Identity=32.1739130434783, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=209, Percent_Identity=31.1004784688995, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=207, Percent_Identity=29.951690821256, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=204, Percent_Identity=30.8823529411765, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=208, Percent_Identity=33.1730769230769, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=210, Percent_Identity=29.0476190476191, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=203, Percent_Identity=27.0935960591133, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=208, Percent_Identity=29.3269230769231, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324820, Length=310, Percent_Identity=27.741935483871, Blast_Score=89, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6323882, Length=210, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI22024069, Length=281, Percent_Identity=45.5516014234875, Blast_Score=213, Evalue=1e-55,
Organism=Drosophila melanogaster, GI28573296, Length=281, Percent_Identity=43.7722419928826, Blast_Score=204, Evalue=6e-53,
Organism=Drosophila melanogaster, GI45553409, Length=288, Percent_Identity=39.2361111111111, Blast_Score=202, Evalue=1e-52,
Organism=Drosophila melanogaster, GI24647948, Length=288, Percent_Identity=39.2361111111111, Blast_Score=202, Evalue=1e-52,
Organism=Drosophila melanogaster, GI24586328, Length=280, Percent_Identity=43.2142857142857, Blast_Score=202, Evalue=2e-52,
Organism=Drosophila melanogaster, GI24647946, Length=288, Percent_Identity=39.2361111111111, Blast_Score=202, Evalue=2e-52,
Organism=Drosophila melanogaster, GI19921754, Length=282, Percent_Identity=43.6170212765958, Blast_Score=201, Evalue=5e-52,
Organism=Drosophila melanogaster, GI161076371, Length=282, Percent_Identity=40.0709219858156, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI45554248, Length=278, Percent_Identity=40.6474820143885, Blast_Score=178, Evalue=3e-45,
Organism=Drosophila melanogaster, GI24640117, Length=278, Percent_Identity=40.6474820143885, Blast_Score=178, Evalue=3e-45,
Organism=Drosophila melanogaster, GI20129347, Length=283, Percent_Identity=31.4487632508834, Blast_Score=144, Evalue=5e-35,
Organism=Drosophila melanogaster, GI24656154, Length=284, Percent_Identity=34.8591549295775, Blast_Score=135, Evalue=3e-32,
Organism=Drosophila melanogaster, GI19922628, Length=284, Percent_Identity=34.8591549295775, Blast_Score=135, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24647931, Length=293, Percent_Identity=34.4709897610922, Blast_Score=132, Evalue=3e-31,
Organism=Drosophila melanogaster, GI23397609, Length=206, Percent_Identity=33.0097087378641, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24643142, Length=202, Percent_Identity=34.1584158415842, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21357041, Length=202, Percent_Identity=32.1782178217822, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24644339, Length=203, Percent_Identity=33.0049261083744, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28571526, Length=200, Percent_Identity=32, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI21358495, Length=210, Percent_Identity=27.6190476190476, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI21355319, Length=207, Percent_Identity=27.536231884058, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30018; Mature: 30018

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGKVCLITGATGGIGLEAAKALARMGATVVLVGRDAGRTEAAVAAVKEAAPSAQVDWLR
CCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHH
ADLASLKSVRELAQTFRSRYPRLDVLLNNAGLIIDRRQVTEDGLEATMATNHFAPFLLTN
HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHH
LLLDVMKATGPARIINVSSDAHAAGKLDFDDLQSERGFIGFRVYGTSKLANILFTRALAK
HHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHH
RLEGTQVTTNALHPGVVRTGFGHNTQGFFRHLVKLGAAFMISAEKGARTSVYLASSPEVE
HCCCCEEECCCCCCCCEECCCCCCHHHHHHHHHHHCHHEEEECCCCCCEEEEEECCCCCE
AVSGQYFYKCRPKKPSSAARNDALAERLWQVSEQLTGVKG
EECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDGKVCLITGATGGIGLEAAKALARMGATVVLVGRDAGRTEAAVAAVKEAAPSAQVDWLR
CCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHH
ADLASLKSVRELAQTFRSRYPRLDVLLNNAGLIIDRRQVTEDGLEATMATNHFAPFLLTN
HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHH
LLLDVMKATGPARIINVSSDAHAAGKLDFDDLQSERGFIGFRVYGTSKLANILFTRALAK
HHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHH
RLEGTQVTTNALHPGVVRTGFGHNTQGFFRHLVKLGAAFMISAEKGARTSVYLASSPEVE
HCCCCEEECCCCCCCCEECCCCCCHHHHHHHHHHHCHHEEEECCCCCCEEEEEECCCCCE
AVSGQYFYKCRPKKPSSAARNDALAERLWQVSEQLTGVKG
EECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383668 [H]