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The map label for this gene is secF [H]

Identifier: 108563923

GI number: 108563923

Start: 1559419

End: 1560390

Strand: Reverse

Name: secF [H]

Synonym: HPAG1_1498

Alternate gene names: 108563923

Gene position: 1560390-1559419 (Counterclockwise)

Preceding gene: 108563924

Following gene: 108563922

Centisome position: 97.75

GC content: 40.33

Gene sequence:

>972_bases
ATGGAATTATTCAAACAAACTAGAATCTTAAACTTCATGCGTTATTCCAATTATGGGGTGATTGTTTCAGCGATATTAGC
GCTTCTGGCGTTAGGGCTTTTGTTTTTCAAAGGGTTTTCTTTAGGGATTGATTTTGCGGGGGGGAGTTTGGTGCAAGTGC
GTTACGCTCAAAACGCTCCTATTAAAGAAGTGCGCGATCTTTTTGAAAAAGAAGCTCGCTTCAAAGGCGTGCAAGTGAGC
GAATTTGGCTCTAAAGAAGAAATTTTAATCAAATTCCCTTTTGTAGAAACGGCTGAAAATGAAGACTTGAACGCTATCGT
GGCTAACATTCTAAAACCCAGCGGCGATTTTGAAATCCGTAAATTTGACACCGTTGGCCCTAGAGTGGGGAGCGAGTTGA
AAGAAAAGGGCATCTTGTCGCTGATTTTAGCGTTAATAGCGATCATGGTTTATGTGAGTTTCCGCTATGAATGGCGTTTC
GCTTTAGCGAGCGTCATTGCGCTTGTGCATGATGTGATTTTAGTGGCAAGCTCAGTGATTGTTTTTAAGATTGATATGAA
TTTGGAAGTGATTGCGGCCTTGCTCACCTTGATTGGGTATTCCATTAATGATACGATCATTATTTTTGATCGAATCAGAG
AAGAGATACTCTCTCAAAAAACCAAAAACGCCATTCAAGCCATTAATGAAGCCATTTCCAGCACGCTCACGCGCACGCTT
CTAACTTCTTTAACCGTGTTTTTTGTGGTGTTGATTTTGTGCGTGTTTGGGAGTAAGATCATCATTGGTTTTTCGTTGCC
CATGTTAATAGGCACGATTGTAGGGACTTATAGCTCTATTTTCATCGCCCCTAAAGTAGCGTTATTGTTAGGTTTTGATA
TGGGTAAATATTATGAGAATGAGGCTAGAAAAATCAAAAAAGCTCAAGAGAAAGAAAAAATGCGCCGTTTGTATGAGGGC
GGTCAAGTTTAA

Upstream 100 bases:

>100_bases
TAGGCACGCAAGGGATTTATCAAGCCCTTTTGCCTAAACTCACTCAAACAAAAAGCCTTTATTTTTGGTTTGGCGTGAAC
AAAAGAGCTTAGGAGGTTTT

Downstream 100 bases:

>100_bases
GGAGTTTCTATGGATTGGGGTCGGGTCGTTCATGTGCTGTTCAGCCTTATTTCTTTAACCACCATTGCAGGGTTTTTGTA
TGAGCCTAATACGGTGGTGT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MELFKQTRILNFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYAQNAPIKEVRDLFEKEARFKGVQVS
EFGSKEEILIKFPFVETAENEDLNAIVANILKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRF
ALASVIALVHDVILVASSVIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEILSQKTKNAIQAINEAISSTLTRTL
LTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMGKYYENEARKIKKAQEKEKMRRLYEG
GQV

Sequences:

>Translated_323_residues
MELFKQTRILNFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYAQNAPIKEVRDLFEKEARFKGVQVS
EFGSKEEILIKFPFVETAENEDLNAIVANILKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRF
ALASVIALVHDVILVASSVIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEILSQKTKNAIQAINEAISSTLTRTL
LTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMGKYYENEARKIKKAQEKEKMRRLYEG
GQV
>Mature_323_residues
MELFKQTRILNFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYAQNAPIKEVRDLFEKEARFKGVQVS
EFGSKEEILIKFPFVETAENEDLNAIVANILKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRF
ALASVIALVHDVILVASSVIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEILSQKTKNAIQAINEAISSTLTRTL
LTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMGKYYENEARKIKKAQEKEKMRRLYEG
GQV

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=306, Percent_Identity=35.2941176470588, Blast_Score=207, Evalue=8e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 36121; Mature: 36121

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFKQTRILNFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYAQNAP
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHCEEEECCCCEEEEEECCCCC
IKEVRDLFEKEARFKGVQVSEFGSKEEILIKFPFVETAENEDLNAIVANILKPSGDFEIR
HHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCEECCCCCCHHHHHHHHHCCCCCCEEE
KFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVIALVHDVILVASSVI
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
VFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEILSQKTKNAIQAINEAISSTLTRTL
EEEECCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMGKYYEN
HHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
EARKIKKAQEKEKMRRLYEGGQV
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MELFKQTRILNFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYAQNAP
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHCEEEECCCCEEEEEECCCCC
IKEVRDLFEKEARFKGVQVSEFGSKEEILIKFPFVETAENEDLNAIVANILKPSGDFEIR
HHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCEECCCCCCHHHHHHHHHCCCCCCEEE
KFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVIALVHDVILVASSVI
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
VFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEILSQKTKNAIQAINEAISSTLTRTL
EEEECCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMGKYYEN
HHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
EARKIKKAQEKEKMRRLYEGGQV
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]