| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is bcgIA [H]
Identifier: 108563866
GI number: 108563866
Start: 1497943
End: 1499154
Strand: Direct
Name: bcgIA [H]
Synonym: HPAG1_1441
Alternate gene names: 108563866
Gene position: 1497943-1499154 (Clockwise)
Preceding gene: 108563865
Following gene: 108563867
Centisome position: 93.83
GC content: 37.05
Gene sequence:
>1212_bases ATGCAAGCTTTTCAGTTAGAAGATGATGTTGATGACTATGTTAAAAAAGAATTGATTAATTTAGGGCTTATGAAAAATAA GGATTTTAATGTTAAAAGCCAAATGAGTCCTAGCCTTAAAAACGCCCTTTTGAATGCGAGTAAAACTAAAGATAAAACTT CTTATGGCGAGCCAGATTTTAGCTTAGAAAAATACACGCACCCTAAAAATAAAGAGAGCGTTATCCCTATAATCATAGAA AACAAACTCTACGCTAAAAATTTAAAAAAGCTCAAAAACGACGCGTTGCAAAACGATGACAATTCCATTTCAAAGTTCGC CGTGAATGGGGCTTTACACTACGCTCAAAATATCCTAAGAGACAAAGAAAAATATAAAGAATGTATCGCCATAGGCATAG CCGGCGATGATGAACAAAACCTTTTGATAGAAGTGTATTATGTTTTTGCAAGCGGGATCAATTCGCACAAACTCACTAGC GCTAAAAACCTGCATTTTTTAGAAAATCAAGAATCGTTTAACGCTTTTTATAAAGAATGCACGCTCACGGAAGAAGAAAA GCATTCCATCTTAATCAAAACCAAAGCCGATCTAAACGAAACCGCTAAAAAACTCAACCGCCTTATGCATAACCACAACA TCACCGCGCCTCAGCGCGTGCTATACGTGAGCGGCATGCTTTTATCCATGCAAGAAATTAAGGGCAAAAAAGGGGGTTTA AAACCAAGCGATTTAAAAGGCGAATTGACTGACACTAGCCGTGATGGCGTTTTAGTGTTTAACCAAATTAGCGAATTTTT GAAAACCAAAAACTTGAGCGAAGAAAAACGAGATCTAATGCTCGCCAGTTTCAAAGAAATCAGTAAAGACCCGCAACGCG ATAAAGAAACAAGCCTAGATAAAGCCATAAGCATGCTTTTAGAAAAAGATTCAAGTATCACTAAGCAAATTTTTACCTTT CTTTATGAATTTGTCCATAAGCCCATTAATGAAAGCGACAATACCGGTCATTTAGACATCATGGGCGAACTTTATAGCGA ATTTTTAAAATACGCTTTAGGGGATGGTAAGGAATTAGGCATTGTTTTAACCCCGCCTTATGTAACTAAAATGATGAGCG AACTTTTAGGGGTTAATGCAAAGTCTTTTGTGATGGATTTGGCCGCAGGGAGCGCGGGTTTTTTTAATTTCTTCTATGGT GCTAATGATTGA
Upstream 100 bases:
>100_bases TAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTGCAGCGCGGATGAATGAGTTATAATTTTA ATTTTTAAAAGGATAAAACC
Downstream 100 bases:
>100_bases AGACATTGAAAAAACCTATGGTAAAAACACCACTAAAGCGAACGAAAAAATAAAAAACGCAAAAACCACGCAGCTTTTAG GCGTGGAGCTTAACGCTGAA
Product: restriction enzyme BcgI alpha chain-like protein
Products: NA
Alternate protein names: Adenine-specific methyltransferase activity [H]
Number of amino acids: Translated: 403; Mature: 403
Protein sequence:
>403_residues MQAFQLEDDVDDYVKKELINLGLMKNKDFNVKSQMSPSLKNALLNASKTKDKTSYGEPDFSLEKYTHPKNKESVIPIIIE NKLYAKNLKKLKNDALQNDDNSISKFAVNGALHYAQNILRDKEKYKECIAIGIAGDDEQNLLIEVYYVFASGINSHKLTS AKNLHFLENQESFNAFYKECTLTEEEKHSILIKTKADLNETAKKLNRLMHNHNITAPQRVLYVSGMLLSMQEIKGKKGGL KPSDLKGELTDTSRDGVLVFNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLEKDSSITKQIFTF LYEFVHKPINESDNTGHLDIMGELYSEFLKYALGDGKELGIVLTPPYVTKMMSELLGVNAKSFVMDLAAGSAGFFNFFYG AND
Sequences:
>Translated_403_residues MQAFQLEDDVDDYVKKELINLGLMKNKDFNVKSQMSPSLKNALLNASKTKDKTSYGEPDFSLEKYTHPKNKESVIPIIIE NKLYAKNLKKLKNDALQNDDNSISKFAVNGALHYAQNILRDKEKYKECIAIGIAGDDEQNLLIEVYYVFASGINSHKLTS AKNLHFLENQESFNAFYKECTLTEEEKHSILIKTKADLNETAKKLNRLMHNHNITAPQRVLYVSGMLLSMQEIKGKKGGL KPSDLKGELTDTSRDGVLVFNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLEKDSSITKQIFTF LYEFVHKPINESDNTGHLDIMGELYSEFLKYALGDGKELGIVLTPPYVTKMMSELLGVNAKSFVMDLAAGSAGFFNFFYG AND >Mature_403_residues MQAFQLEDDVDDYVKKELINLGLMKNKDFNVKSQMSPSLKNALLNASKTKDKTSYGEPDFSLEKYTHPKNKESVIPIIIE NKLYAKNLKKLKNDALQNDDNSISKFAVNGALHYAQNILRDKEKYKECIAIGIAGDDEQNLLIEVYYVFASGINSHKLTS AKNLHFLENQESFNAFYKECTLTEEEKHSILIKTKADLNETAKKLNRLMHNHNITAPQRVLYVSGMLLSMQEIKGKKGGL KPSDLKGELTDTSRDGVLVFNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLEKDSSITKQIFTF LYEFVHKPINESDNTGHLDIMGELYSEFLKYALGDGKELGIVLTPPYVTKMMSELLGVNAKSFVMDLAAGSAGFFNFFYG AND
Specific function: Recognizes the double-stranded sequence 5'-CGAN(6)TGC-3' and cleaves bilaterally and symmetrically outside the sequence to release a 34-base pair fragment. Methylation of the recognition sequence occurs on the adenine in either one or both strands [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 [H]
Pfam domain/function: PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 45599; Mature: 45599
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAFQLEDDVDDYVKKELINLGLMKNKDFNVKSQMSPSLKNALLNASKTKDKTSYGEPDF CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCCCCC SLEKYTHPKNKESVIPIIIENKLYAKNLKKLKNDALQNDDNSISKFAVNGALHYAQNILR CHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH DKEKYKECIAIGIAGDDEQNLLIEVYYVFASGINSHKLTSAKNLHFLENQESFNAFYKEC HHHHHHHHEEEEECCCCCCCHHHEEEEHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHC TLTEEEKHSILIKTKADLNETAKKLNRLMHNHNITAPQRVLYVSGMLLSMQEIKGKKGGL CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC KPSDLKGELTDTSRDGVLVFNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLD CCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH KAISMLLEKDSSITKQIFTFLYEFVHKPINESDNTGHLDIMGELYSEFLKYALGDGKELG HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEE IVLTPPYVTKMMSELLGVNAKSFVMDLAAGSAGFFNFFYGAND EEECCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEECCCCC >Mature Secondary Structure MQAFQLEDDVDDYVKKELINLGLMKNKDFNVKSQMSPSLKNALLNASKTKDKTSYGEPDF CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCCCCC SLEKYTHPKNKESVIPIIIENKLYAKNLKKLKNDALQNDDNSISKFAVNGALHYAQNILR CHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH DKEKYKECIAIGIAGDDEQNLLIEVYYVFASGINSHKLTSAKNLHFLENQESFNAFYKEC HHHHHHHHEEEEECCCCCCCHHHEEEEHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHC TLTEEEKHSILIKTKADLNETAKKLNRLMHNHNITAPQRVLYVSGMLLSMQEIKGKKGGL CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC KPSDLKGELTDTSRDGVLVFNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLD CCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH KAISMLLEKDSSITKQIFTFLYEFVHKPINESDNTGHLDIMGELYSEFLKYALGDGKELG HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEE IVLTPPYVTKMMSELLGVNAKSFVMDLAAGSAGFFNFFYGAND EEECCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8451198; 8276869 [H]