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The map label for this gene is rplY [H]

Identifier: 108563842

GI number: 108563842

Start: 1474635

End: 1475171

Strand: Reverse

Name: rplY [H]

Synonym: HPAG1_1417

Alternate gene names: 108563842

Gene position: 1475171-1474635 (Counterclockwise)

Preceding gene: 108563843

Following gene: 108563841

Centisome position: 92.41

GC content: 38.36

Gene sequence:

>537_bases
ATGTTAGAAGGCGTTATTAGAGAGAGTATTACTAAAGCTAACGCTAAAGCTTTAAAAAAAGATGGCTATCTAATCGCAAA
CGTTTATGGAAAGGGCATTGAAAACGTGAATGGCGCGTTCAAATTAAACCCTTTCATTAAATACCTTAAGGAAAAAAAGC
ATTTGATTTTTCCGGTGAAATTAGGAGATAAGACTTTTGAAGTCGTGGTTCAAGAATACCAAAAAAACCCTGTTACTAAC
GAGCTTATCCATGTGGATTTGCTCGCTGTTACTAAAGGCGTGAAGTCTAAGTTTAAAGTCCCCGTTAAACACCAAGGCAC
TCCGGTGGGCTTGAAAAATAAAGGGATTTTAATGCTCTCTAAAAAGCGTATCAGCGTGGAATGTGCTCCAGAGCATTTGC
CCGATCACTATTTAGTGGATGTAGCCCCTTTAGACGTGAATGAGTCTATTTTGGTGCGCGATTTAGAAAAACACGAAAAT
GTTAAGATTTTAGATCATGATTCTATCGCTGTGATCGGTGTGATTAAAGCGAAGTGA

Upstream 100 bases:

>100_bases
GATAGCGTTCAAACAATCCTTTGAAAAGCTTTTAAGCAGTTTTTGATTTTTAAGGGTTTTTTGGATAGAATAAGCCCTTA
TTTTATTTTAAAGGATTGAC

Downstream 100 bases:

>100_bases
TTTTAGGCTATGACGCTTTTAGTAGGTTTAGGCAACCCTACTTTGCGTTACGCTCACACCAGACACAACGCTGGTTTTGA
TATTTTAGATTCACTCGTTA

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC [H]

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MLEGVIRESITKANAKALKKDGYLIANVYGKGIENVNGAFKLNPFIKYLKEKKHLIFPVKLGDKTFEVVVQEYQKNPVTN
ELIHVDLLAVTKGVKSKFKVPVKHQGTPVGLKNKGILMLSKKRISVECAPEHLPDHYLVDVAPLDVNESILVRDLEKHEN
VKILDHDSIAVIGVIKAK

Sequences:

>Translated_178_residues
MLEGVIRESITKANAKALKKDGYLIANVYGKGIENVNGAFKLNPFIKYLKEKKHLIFPVKLGDKTFEVVVQEYQKNPVTN
ELIHVDLLAVTKGVKSKFKVPVKHQGTPVGLKNKGILMLSKKRISVECAPEHLPDHYLVDVAPLDVNESILVRDLEKHEN
VKILDHDSIAVIGVIKAK
>Mature_178_residues
MLEGVIRESITKANAKALKKDGYLIANVYGKGIENVNGAFKLNPFIKYLKEKKHLIFPVKLGDKTFEVVVQEYQKNPVTN
ELIHVDLLAVTKGVKSKFKVPVKHQGTPVGLKNKGILMLSKKRISVECAPEHLPDHYLVDVAPLDVNESILVRDLEKHEN
VKILDHDSIAVIGVIKAK

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance [H]

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- ProDom:   PD012503 [H]

Pfam domain/function: PF01386 Ribosomal_L25p [H]

EC number: NA

Molecular weight: Translated: 19866; Mature: 19866

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEGVIRESITKANAKALKKDGYLIANVYGKGIENVNGAFKLNPFIKYLKEKKHLIFPVK
CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHCCCCEEEEEE
LGDKTFEVVVQEYQKNPVTNELIHVDLLAVTKGVKSKFKVPVKHQGTPVGLKNKGILMLS
ECCHHHHHHHHHHHCCCCCCHHEEEHHHHHHHCCHHHEECCCCCCCCCCCCCCCCEEEEE
KKRISVECAPEHLPDHYLVDVAPLDVNESILVRDLEKHENVKILDHDSIAVIGVIKAK
CCEEEEEECCCCCCCCEEEEEEECCCCCHHHEEEHHHCCCEEEEECCCEEEEEEEECC
>Mature Secondary Structure
MLEGVIRESITKANAKALKKDGYLIANVYGKGIENVNGAFKLNPFIKYLKEKKHLIFPVK
CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHCCCCEEEEEE
LGDKTFEVVVQEYQKNPVTNELIHVDLLAVTKGVKSKFKVPVKHQGTPVGLKNKGILMLS
ECCHHHHHHHHHHHCCCCCCHHEEEHHHHHHHCCHHHEECCCCCCCCCCCCCCCCEEEEE
KKRISVECAPEHLPDHYLVDVAPLDVNESILVRDLEKHENVKILDHDSIAVIGVIKAK
CCEEEEEECCCCCCCCEEEEEEECCCCCHHHEEEHHHCCCEEEEECCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA