| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is mod [H]
Identifier: 108563818
GI number: 108563818
Start: 1442641
End: 1444605
Strand: Direct
Name: mod [H]
Synonym: HPAG1_1393
Alternate gene names: 108563818
Gene position: 1442641-1444605 (Clockwise)
Preceding gene: 108563817
Following gene: 108563819
Centisome position: 90.37
GC content: 33.84
Gene sequence:
>1965_bases ATGCAAAATAAAGAAATTGGTGGAGAAAAAAGCGTTAATGAAAAAAATGTAGAGGTTTTTAATCGTTATTTTCCCGGTTG TTTGAGTATAGAAAATGATGATAAACTCACGCTAAATGTGGAAAGATTGAAAGCGTTACTAGGGGATTTTAGCGAAATAA AAGAAGAGGGCTATGGGTTGGATTTTGTGGGTAAGAAAATCGCCTTAAATCAAGCTTTTAAGAAAAATCATAAGATTTTA AAGCCCTTAAATAAATCCACGAGCAAGCACATTCTCATCAAGGGCGATAATTTAGACGCTCTCAAAATCTTAAAACAAAG CTATAGTGAAAAAATCAAAATGATTTACATTGATCCGCCTTACAACACGAAAAACGATAATTTTATCTATAGTGATGATT TCTCGCAATCCAATGAAGAGACTTTAAAAACATTGGATTATTCTAAAGAAAAATTGGATTATATCAAGAATCTTTTTGGG TCAAAATGCCATAGCGGGTGGCTTAGTTTCATGTATCCCAGATTGTTGCTCGCTAAAGATTTGCTCAAACAAGACGGCGT GATTTTTATCAGCATTGACGATAACGAGTGCGCGAATTTAAAAATCTTGTGCGATGAGATTTTTGGGGAGGGGAATTTTG TGGCTGAAATGCCAAGATTAACAAAGAAAGCAGGAAAATCCACTAATCAAATCGCTAAAAATCATGATTATGTTTTGTGT TATCAAAAGAATAGTATTAATTTTAAACAGATTGATATTGATGAAAACGATTACTCTTTAAAAGATGAATTTTACAATGA AAGAGGCGGGTATAAATTAAATCAAAATTTGGATTACAATTCACTTCAATATAATAAAAGAATGGATTATGAAATTGTAA TTGGTAATGAAAAGTTTTATGCTGGCGGATTAGAAACTTATACTGAAAGACAAAAAGGTAATTTTGGAACGATTGATTGG GTTTGGCGTTGGAGCAAAGCAAAATTTGATTTTGGATTGGCTAATGGTTTTGTAGAAGTTAAAAATAATAGAATTTATAC AAAAACTTACACAAAGGCTAAAATATCTGATAGCAAGCCTTATAAAATAGAATATTTTAACCGCACTAAAAATATTTCAA GTATAGAATTTTTAGATAATAAATACTCTAATGATATGTCAAATAAAAAATTGCAATCAATTTTTAATGTTAAGAATATT TTTGATTATTCTAAACCTGTTGAATTGATAAGTTTTCTCATAGATCAAACTACCGAAAAAGGCGACATCATCTTAGATTT TTTCGCCGGGAGCGGGACAACCGCGCATGCCGTGTTAGAGAGTAATAAGAGCGATTATCAAAAATTAAGTGAGGGGGGGG GGGGGTTATTTAATGGCTTGAACGCCGCATTTAAAGAAAGGCGCTTCATTCTTGTCCAATTAGATGAAAAAATTGACCCC AAGAAAAACAAAAGCGCTTATGATTTTTGTTTAAACACCTTAAAATCACCCTCCCCAAGCATTTTTGACATCACCGAAGA AAGGATTAAAAGAGCGGGGGCTAAAATCAAAGAAGCTTGCACGCATTTAGATGTGGGGTTTAGAGCGTTTGAAATCATTG ATGATGAAACGCATGCTAATGATAAAAATCTCAGTCAAGCCCATCAAAAGGATTTGTTCGCTTATTCCAACCCCAAAAAA AGGGAAACTCAAACGATTTTAATCAAGCTTTTAGGCTGCGAGGGTTTAGAGCTCACCACCCCTATAATTTGCTTGATTGA AAACGCCTTGTATCTGGCTTTAAATACGGCTTTCATTGTGGGGGATATAGAAATGAGCGAAGTTTTAGAAAACTTGAAAG ATAAAGGGGTGGAAAAAATCAGCATGTATATGCCAGCTATCAGTAACGACAGGCTGTGTTTGGAATTGGGCAGTAATTTG TTGGATTTGAAATTAGAGAGCGGCGATTTAAAGATTAGGGGGTAG
Upstream 100 bases:
>100_bases TTTTTAAAGGCCGCTAGCGTTTCACGGGGAACATTTGAAAATTGAAAATTGAAAATTAAGGCAGAATTGGGTAATTTAAA TCATTTAAAAAAGGATAGAG
Downstream 100 bases:
>100_bases AGGTGAAAATCAAATTCAAACGATTGGACTATCAGGAGCAATGCCGGGACCAAATTTTAGGGGTGTTTAAGGGGATTGAT TTGAGAGAGCCAGAAAATGA
Product: type III R-M system modification enzyme
Products: NA
Alternate protein names: M.StyLTI; StyLTI methyltransferase [H]
Number of amino acids: Translated: 654; Mature: 654
Protein sequence:
>654_residues MQNKEIGGEKSVNEKNVEVFNRYFPGCLSIENDDKLTLNVERLKALLGDFSEIKEEGYGLDFVGKKIALNQAFKKNHKIL KPLNKSTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEETLKTLDYSKEKLDYIKNLFG SKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNECANLKILCDEIFGEGNFVAEMPRLTKKAGKSTNQIAKNHDYVLC YQKNSINFKQIDIDENDYSLKDEFYNERGGYKLNQNLDYNSLQYNKRMDYEIVIGNEKFYAGGLETYTERQKGNFGTIDW VWRWSKAKFDFGLANGFVEVKNNRIYTKTYTKAKISDSKPYKIEYFNRTKNISSIEFLDNKYSNDMSNKKLQSIFNVKNI FDYSKPVELISFLIDQTTEKGDIILDFFAGSGTTAHAVLESNKSDYQKLSEGGGGLFNGLNAAFKERRFILVQLDEKIDP KKNKSAYDFCLNTLKSPSPSIFDITEERIKRAGAKIKEACTHLDVGFRAFEIIDDETHANDKNLSQAHQKDLFAYSNPKK RETQTILIKLLGCEGLELTTPIICLIENALYLALNTAFIVGDIEMSEVLENLKDKGVEKISMYMPAISNDRLCLELGSNL LDLKLESGDLKIRG
Sequences:
>Translated_654_residues MQNKEIGGEKSVNEKNVEVFNRYFPGCLSIENDDKLTLNVERLKALLGDFSEIKEEGYGLDFVGKKIALNQAFKKNHKIL KPLNKSTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEETLKTLDYSKEKLDYIKNLFG SKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNECANLKILCDEIFGEGNFVAEMPRLTKKAGKSTNQIAKNHDYVLC YQKNSINFKQIDIDENDYSLKDEFYNERGGYKLNQNLDYNSLQYNKRMDYEIVIGNEKFYAGGLETYTERQKGNFGTIDW VWRWSKAKFDFGLANGFVEVKNNRIYTKTYTKAKISDSKPYKIEYFNRTKNISSIEFLDNKYSNDMSNKKLQSIFNVKNI FDYSKPVELISFLIDQTTEKGDIILDFFAGSGTTAHAVLESNKSDYQKLSEGGGGLFNGLNAAFKERRFILVQLDEKIDP KKNKSAYDFCLNTLKSPSPSIFDITEERIKRAGAKIKEACTHLDVGFRAFEIIDDETHANDKNLSQAHQKDLFAYSNPKK RETQTILIKLLGCEGLELTTPIICLIENALYLALNTAFIVGDIEMSEVLENLKDKGVEKISMYMPAISNDRLCLELGSNL LDLKLESGDLKIRG >Mature_654_residues MQNKEIGGEKSVNEKNVEVFNRYFPGCLSIENDDKLTLNVERLKALLGDFSEIKEEGYGLDFVGKKIALNQAFKKNHKIL KPLNKSTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEETLKTLDYSKEKLDYIKNLFG SKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNECANLKILCDEIFGEGNFVAEMPRLTKKAGKSTNQIAKNHDYVLC YQKNSINFKQIDIDENDYSLKDEFYNERGGYKLNQNLDYNSLQYNKRMDYEIVIGNEKFYAGGLETYTERQKGNFGTIDW VWRWSKAKFDFGLANGFVEVKNNRIYTKTYTKAKISDSKPYKIEYFNRTKNISSIEFLDNKYSNDMSNKKLQSIFNVKNI FDYSKPVELISFLIDQTTEKGDIILDFFAGSGTTAHAVLESNKSDYQKLSEGGGGLFNGLNAAFKERRFILVQLDEKIDP KKNKSAYDFCLNTLKSPSPSIFDITEERIKRAGAKIKEACTHLDVGFRAFEIIDDETHANDKNLSQAHQKDLFAYSNPKK RETQTILIKLLGCEGLELTTPIICLIENALYLALNTAFIVGDIEMSEVLENLKDKGVEKISMYMPAISNDRLCLELGSNL LDLKLESGDLKIRG
Specific function: Binds the system-specific DNA recognition site 5'-CAGAG- 3'. Necessary for restriction and for methylation of A-4 [H]
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002295 - InterPro: IPR002941 - InterPro: IPR002052 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 74856; Mature: 74856
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNKEIGGEKSVNEKNVEVFNRYFPGCLSIENDDKLTLNVERLKALLGDFSEIKEEGYGL CCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCEEEEEHHHHHHHHCCHHHHHHCCCCC DFVGKKIALNQAFKKNHKILKPLNKSTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPP CCCCHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCC YNTKNDNFIYSDDFSQSNEETLKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKD CCCCCCCEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LLKQDGVIFISIDDNECANLKILCDEIFGEGNFVAEMPRLTKKAGKSTNQIAKNHDYVLC HHHHCCEEEEEECCCCCCCCEEEEHHHCCCCCEEHHHHHHHHHHCCCHHHHHCCCCEEEE YQKNSINFKQIDIDENDYSLKDEFYNERGGYKLNQNLDYNSLQYNKRMDYEIVIGNEKFY EECCCCCEEEEECCCCCCCCHHHHHHCCCCEEECCCCCCCCEECCCCCCEEEEECCCEEE AGGLETYTERQKGNFGTIDWVWRWSKAKFDFGLANGFVEVKNNRIYTKTYTKAKISDSKP ECCHHHHHHHHCCCCCCEEEEEEECCCCCCEECCCCEEEEECCEEEEEEECEEECCCCCC YKIEYFNRTKNISSIEFLDNKYSNDMSNKKLQSIFNVKNIFDYSKPVELISFLIDQTTEK EEEEEECCCCCCCHHHHHHCHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC GDIILDFFAGSGTTAHAVLESNKSDYQKLSEGGGGLFNGLNAAFKERRFILVQLDEKIDP CCEEEEEECCCCCEEEHEECCCHHHHHHHHCCCCCHHHHHHHHHHCCEEEEEEECCCCCC KKNKSAYDFCLNTLKSPSPSIFDITEERIKRAGAKIKEACTHLDVGFRAFEIIDDETHAN CCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEECCCCCCC DKNLSQAHQKDLFAYSNPKKRETQTILIKLLGCEGLELTTPIICLIENALYLALNTAFIV CCHHHHHHHHHHHCCCCCCCHHHHEEEEHEECCCCCCHHHHHHHHHHHHHEEEEEEEEEE GDIEMSEVLENLKDKGVEKISMYMPAISNDRLCLELGSNLLDLKLESGDLKIRG ECCCHHHHHHHHHHCCHHEEHHHCCCCCCCCEEHHHCCCEEEEEEECCCEEECC >Mature Secondary Structure MQNKEIGGEKSVNEKNVEVFNRYFPGCLSIENDDKLTLNVERLKALLGDFSEIKEEGYGL CCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCEEEEEHHHHHHHHCCHHHHHHCCCCC DFVGKKIALNQAFKKNHKILKPLNKSTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPP CCCCHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCC YNTKNDNFIYSDDFSQSNEETLKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKD CCCCCCCEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LLKQDGVIFISIDDNECANLKILCDEIFGEGNFVAEMPRLTKKAGKSTNQIAKNHDYVLC HHHHCCEEEEEECCCCCCCCEEEEHHHCCCCCEEHHHHHHHHHHCCCHHHHHCCCCEEEE YQKNSINFKQIDIDENDYSLKDEFYNERGGYKLNQNLDYNSLQYNKRMDYEIVIGNEKFY EECCCCCEEEEECCCCCCCCHHHHHHCCCCEEECCCCCCCCEECCCCCCEEEEECCCEEE AGGLETYTERQKGNFGTIDWVWRWSKAKFDFGLANGFVEVKNNRIYTKTYTKAKISDSKP ECCHHHHHHHHCCCCCCEEEEEEECCCCCCEECCCCEEEEECCEEEEEEECEEECCCCCC YKIEYFNRTKNISSIEFLDNKYSNDMSNKKLQSIFNVKNIFDYSKPVELISFLIDQTTEK EEEEEECCCCCCCHHHHHHCHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC GDIILDFFAGSGTTAHAVLESNKSDYQKLSEGGGGLFNGLNAAFKERRFILVQLDEKIDP CCEEEEEECCCCCEEEHEECCCHHHHHHHHCCCCCHHHHHHHHHHCCEEEEEEECCCCCC KKNKSAYDFCLNTLKSPSPSIFDITEERIKRAGAKIKEACTHLDVGFRAFEIIDDETHAN CCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEECCCCCCC DKNLSQAHQKDLFAYSNPKKRETQTILIKLLGCEGLELTTPIICLIENALYLALNTAFIV CCHHHHHHHHHHHCCCCCCCHHHHEEEEHEECCCCCCHHHHHHHHHHHHHEEEEEEEEEE GDIEMSEVLENLKDKGVEKISMYMPAISNDRLCLELGSNLLDLKLESGDLKIRG ECCCHHHHHHHHHHCCHHEEHHHCCCCCCCCEEHHHCCCEEEEEEECCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8387444; 11677609 [H]