Click here to switch to the map view.

The map label for this gene is 108563749

Identifier: 108563749

GI number: 108563749

Start: 1370709

End: 1371371

Strand: Direct

Name: 108563749

Synonym: HPAG1_1324

Alternate gene names: NA

Gene position: 1370709-1371371 (Clockwise)

Preceding gene: 108563741

Following gene: 108563750

Centisome position: 85.86

GC content: 37.25

Gene sequence:

>663_bases
ATGCGTTTAAAACATTTTAAAACTTTCCTTTTTATCACAATGGCAATCATTGTTATAGGCACCGGTTGCGCGAACAAAAA
GAAAAAAAAAGACGAATACAACAAACCGGCGATTTTTTGGTATCAAGGGATTTTAAGAGAAATCCTTTTTGCTAATTTAG
AAACAGCGGACAATTACTATTCTTCTTTACAGAGCGAACACATCAATTCCCCCCTTGTCCCAGAAGCGATGCTAGCTTTA
GGGCAAGCGCACATGAAAAAGAAAGAGTATGTTTTGGCGTCTTTTTACTTTGATGAATACATCAAGCGCTTTGGGACGAA
AGACAATGTGGATTATTTGACTTTTTTAAAATTGCAATCTCATTATTACGCTTTCAAAAACCATTCTAAAGACCAGGAAT
TTATCTCTAATTCTATTGTGAGTTTGGGCGAATTTATAGAAAAATACCCTAACAGCCGTTACCGCCCCTATGTAGAATAC
ATGCAAATCAAATTCATTTTAGGGCAAAACGAGCTCAATCGTGCGATCGCAAATGTCTATAAAAAACGCCACAAGCCTGA
GGGCGTGAAACGCTATTTAGAAAGGATAGATGAGACTTTAGAAAAAGAGACCAAACCCAAACCATCGCACATGCCTTGGT
ATGTGTTAATCTTTGATTGGTAG

Upstream 100 bases:

>100_bases
TCTTTAAAATATACAACGGAATTAAGAAAGCGAAGAAAAAATAAATTTGAGCGTGATGAAAGTTATTTTTAAAAAATTTA
ATCTTTACAAGACAGGTGGC

Downstream 100 bases:

>100_bases
GATATTTCAAAACCATACACATTATAACAGAGAGATGAAAAATGACTGAAGATTTTCCTAAAATTCTGCCTTTATTGGTA
GAAGAAGACACCTTTTTATA

Product: competence lipoprotein

Products: NA

Alternate protein names: Lipoprotein; TPR Repeat-Containing Protein; DNA Uptake Lipoprotein-Like; Competence Lipoprotein ComL; Outer Membrane Assembly Lipoprotein Yfio; TRNA-Methyltransferase; DNA Uptake Lipoprotein; Outer Membrane Assembly Lipoprotein YfiO

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MRLKHFKTFLFITMAIIVIGTGCANKKKKKDEYNKPAIFWYQGILREILFANLETADNYYSSLQSEHINSPLVPEAMLAL
GQAHMKKKEYVLASFYFDEYIKRFGTKDNVDYLTFLKLQSHYYAFKNHSKDQEFISNSIVSLGEFIEKYPNSRYRPYVEY
MQIKFILGQNELNRAIANVYKKRHKPEGVKRYLERIDETLEKETKPKPSHMPWYVLIFDW

Sequences:

>Translated_220_residues
MRLKHFKTFLFITMAIIVIGTGCANKKKKKDEYNKPAIFWYQGILREILFANLETADNYYSSLQSEHINSPLVPEAMLAL
GQAHMKKKEYVLASFYFDEYIKRFGTKDNVDYLTFLKLQSHYYAFKNHSKDQEFISNSIVSLGEFIEKYPNSRYRPYVEY
MQIKFILGQNELNRAIANVYKKRHKPEGVKRYLERIDETLEKETKPKPSHMPWYVLIFDW
>Mature_220_residues
MRLKHFKTFLFITMAIIVIGTGCANKKKKKDEYNKPAIFWYQGILREILFANLETADNYYSSLQSEHINSPLVPEAMLAL
GQAHMKKKEYVLASFYFDEYIKRFGTKDNVDYLTFLKLQSHYYAFKNHSKDQEFISNSIVSLGEFIEKYPNSRYRPYVEY
MQIKFILGQNELNRAIANVYKKRHKPEGVKRYLERIDETLEKETKPKPSHMPWYVLIFDW

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26257; Mature: 26257

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00055 RIBOSOMAL_S12

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKHFKTFLFITMAIIVIGTGCANKKKKKDEYNKPAIFWYQGILREILFANLETADNYY
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SSLQSEHINSPLVPEAMLALGQAHMKKKEYVLASFYFDEYIKRFGTKDNVDYLTFLKLQS
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
HYYAFKNHSKDQEFISNSIVSLGEFIEKYPNSRYRPYVEYMQIKFILGQNELNRAIANVY
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
KKRHKPEGVKRYLERIDETLEKETKPKPSHMPWYVLIFDW
HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MRLKHFKTFLFITMAIIVIGTGCANKKKKKDEYNKPAIFWYQGILREILFANLETADNYY
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SSLQSEHINSPLVPEAMLALGQAHMKKKEYVLASFYFDEYIKRFGTKDNVDYLTFLKLQS
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
HYYAFKNHSKDQEFISNSIVSLGEFIEKYPNSRYRPYVEYMQIKFILGQNELNRAIANVY
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
KKRHKPEGVKRYLERIDETLEKETKPKPSHMPWYVLIFDW
HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA