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The map label for this gene is ynaI [C]

Identifier: 108563404

GI number: 108563404

Start: 1030032

End: 1031903

Strand: Reverse

Name: ynaI [C]

Synonym: HPAG1_0979

Alternate gene names: 108563404

Gene position: 1031903-1030032 (Counterclockwise)

Preceding gene: 108563405

Following gene: 108563402

Centisome position: 64.64

GC content: 37.66

Gene sequence:

>1872_bases
ATGCGTTTATTATTGTGGTGGGTATTGGTGTTGTCATTGTTTTTAAATCCTTTGAGGGCGGTTGAAGAGCATGAAACAGA
TGCGGTGGATTTGTTTTTGATTTTCAATCAAATCAACCAACTCAATCAAGTCATTGAAACTTACAAGAAAAACCCTGAAA
GAAGCGCTGAAATCTCTCTGTATAACACTCAAAAGAATGACTTGATTAAAAGTTTGACTTCTAAAGTGTTGAATGAAAGG
GATAAAATTGGCATTGATATCAATCAAAATTTAAAAGAGCAAGAGAAAATCAAAAAGCGTTTGTCTAAAAGCATTAAGGG
CGATAATTTCTACACTTTCATGAAAGACAGATTGTCTTTAGATATTTTGTTGATAGATGAAATTCTGTATCGTTTTATAG
ATAAAATCAGGAGCAGTATTGATATTTTTAGCGAACAAAAAGATGTGGAAAGTATCAGCGATGCTTTCCTTTTGCGTTTA
GGGCAATTCAAACTCTACACTTTCCCTAAAAATTTAGACAATGTTAAAATGCATGAATTAGAGCAGATGTTTAGCGATTA
TGAATTGCGTTTGAACACTTATACCGAAGTCTTGCGTTACATTAAAAACCACCCTAAAGAAGTGCTTCCTAAAAACTTGA
TCATGGAAGTGAATATGGATTTTGTGTTAAACAAAATCAGCAAGGTCTTGCCTTTCACAGCCCATAGCTTGCAAGTGAGT
AAGATTGCGCTGGCTTTGATGATTTTAACCTTATTGCTAGGTTTAAGGCAGTTGATCACTTGGCTTTTAGCCAAATTCCT
GGATTGGATTTTTGAAATCATGCAGCGCAATAAAACAATGCATGTCAATGTGCAAAAAAGCATTGTTTCGCCGGTTTCTG
TCTTTTTAGCCCTATTTAGTTGCGATATAGCTTTAGATATTTTCTACTACCCTAACGCATCGCCCCCTAAAGTTTCTATG
TGGGTGGGCGCGGTGTATATCATGCTTTTAGCATGGTTAGTGATAGCGCTTTTTAAAGGTTATGGGGAAGCGTTAGTTAC
GAATATGGCTACCAAAAGCACGCACAATTTTAGAAAAGAAGTGATCAACTTGATCTTAAAAGTCGTGTATTTTTTGATCT
TTATTGTCACGCTTTTAGGGGTTTTGAAACAACTAGGGTTTAACGTTTCAGCCATCATCGCTTCTTTAGGGATTGGGGGG
TTAGCGGTGGCTTTGGCGGTTAAAGACGTGTTGGCGAATTTCTTTGCTTCGGTCATTTTATTATTAGACAATTCGTTTTC
TCAAGGGGATTGGATCGTGTGCGGTGAAGTGGAGGGTACGGTGGTGGAAATGGGGTTAAGGCGCACCACGATCAGAGCCT
TTGACAACGCTCTTTTGTCCGTGCCTAATTCAGAATTAGCCGGAAAACCCATCAGGAATTGGAGCCGTCGTAAAGTGGGA
AGGCGTATTAAAATGGAAATAGGTTTAACTTATAGCTCCAGTCAAAGCGCTTTACAGCTTTGCGTGAAAGACATTAAAGA
AATGTTAGAAAACCACCCTAAAATCGCTAACGGAGCCGATAGCGCTTTGCAAAATGTGAGCGATTACCGCTACATGTTTA
AAAAAGATATTGTTTCTATTGATGATTTTTTAGGGTATAAAAACAATTTGTTTGTCTTTTTAGACCAGTTTGCGGACAGC
TCTATTAATATTTTAGTGTATTGTTTTTCTAAAACAGTGGTTTGGGAAGAGTGGCTAGAAGTCAAAGAAGATGTGATGCT
AAAAATCATGGGGATTGTAGAAAAGCACCATTTGAGTTTTGCTTTCCCATCACAGAGTTTGTATGTGGAGAGTTTGCCAG
AAGTTAGCCTGAAAGAAGGGGCTAAAATCTGA

Upstream 100 bases:

>100_bases
AAATTGCATGGGTAACTTTATGGGGTGGAGCGTTCCTAATTTTTGGTATAATCGCTAGAAACTATGAGAAAGATTTTATC
TTGTTTGAGTGGGGTTTTGC

Downstream 100 bases:

>100_bases
AATTATTGGTAGATGTATTCTTTGGTTAAGGGGAAAGTGTTATCCACGCTGTTGGTTAAAAGCAATTGGAATAAATCCGC
GCTCCCTACCCTAAAAGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 623; Mature: 623

Protein sequence:

>623_residues
MRLLLWWVLVLSLFLNPLRAVEEHETDAVDLFLIFNQINQLNQVIETYKKNPERSAEISLYNTQKNDLIKSLTSKVLNER
DKIGIDINQNLKEQEKIKKRLSKSIKGDNFYTFMKDRLSLDILLIDEILYRFIDKIRSSIDIFSEQKDVESISDAFLLRL
GQFKLYTFPKNLDNVKMHELEQMFSDYELRLNTYTEVLRYIKNHPKEVLPKNLIMEVNMDFVLNKISKVLPFTAHSLQVS
KIALALMILTLLLGLRQLITWLLAKFLDWIFEIMQRNKTMHVNVQKSIVSPVSVFLALFSCDIALDIFYYPNASPPKVSM
WVGAVYIMLLAWLVIALFKGYGEALVTNMATKSTHNFRKEVINLILKVVYFLIFIVTLLGVLKQLGFNVSAIIASLGIGG
LAVALAVKDVLANFFASVILLLDNSFSQGDWIVCGEVEGTVVEMGLRRTTIRAFDNALLSVPNSELAGKPIRNWSRRKVG
RRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNVSDYRYMFKKDIVSIDDFLGYKNNLFVFLDQFADS
SINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHHLSFAFPSQSLYVESLPEVSLKEGAKI

Sequences:

>Translated_623_residues
MRLLLWWVLVLSLFLNPLRAVEEHETDAVDLFLIFNQINQLNQVIETYKKNPERSAEISLYNTQKNDLIKSLTSKVLNER
DKIGIDINQNLKEQEKIKKRLSKSIKGDNFYTFMKDRLSLDILLIDEILYRFIDKIRSSIDIFSEQKDVESISDAFLLRL
GQFKLYTFPKNLDNVKMHELEQMFSDYELRLNTYTEVLRYIKNHPKEVLPKNLIMEVNMDFVLNKISKVLPFTAHSLQVS
KIALALMILTLLLGLRQLITWLLAKFLDWIFEIMQRNKTMHVNVQKSIVSPVSVFLALFSCDIALDIFYYPNASPPKVSM
WVGAVYIMLLAWLVIALFKGYGEALVTNMATKSTHNFRKEVINLILKVVYFLIFIVTLLGVLKQLGFNVSAIIASLGIGG
LAVALAVKDVLANFFASVILLLDNSFSQGDWIVCGEVEGTVVEMGLRRTTIRAFDNALLSVPNSELAGKPIRNWSRRKVG
RRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNVSDYRYMFKKDIVSIDDFLGYKNNLFVFLDQFADS
SINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHHLSFAFPSQSLYVESLPEVSLKEGAKI
>Mature_623_residues
MRLLLWWVLVLSLFLNPLRAVEEHETDAVDLFLIFNQINQLNQVIETYKKNPERSAEISLYNTQKNDLIKSLTSKVLNER
DKIGIDINQNLKEQEKIKKRLSKSIKGDNFYTFMKDRLSLDILLIDEILYRFIDKIRSSIDIFSEQKDVESISDAFLLRL
GQFKLYTFPKNLDNVKMHELEQMFSDYELRLNTYTEVLRYIKNHPKEVLPKNLIMEVNMDFVLNKISKVLPFTAHSLQVS
KIALALMILTLLLGLRQLITWLLAKFLDWIFEIMQRNKTMHVNVQKSIVSPVSVFLALFSCDIALDIFYYPNASPPKVSM
WVGAVYIMLLAWLVIALFKGYGEALVTNMATKSTHNFRKEVINLILKVVYFLIFIVTLLGVLKQLGFNVSAIIASLGIGG
LAVALAVKDVLANFFASVILLLDNSFSQGDWIVCGEVEGTVVEMGLRRTTIRAFDNALLSVPNSELAGKPIRNWSRRKVG
RRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNVSDYRYMFKKDIVSIDDFLGYKNNLFVFLDQFADS
SINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHHLSFAFPSQSLYVESLPEVSLKEGAKI

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1787591, Length=252, Percent_Identity=39.6825396825397, Blast_Score=181, Evalue=1e-46,
Organism=Escherichia coli, GI1789291, Length=254, Percent_Identity=26.3779527559055, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1786670, Length=195, Percent_Identity=25.1282051282051, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1786791, Length=240, Percent_Identity=25.4166666666667, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 71456; Mature: 71456

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLWWVLVLSLFLNPLRAVEEHETDAVDLFLIFNQINQLNQVIETYKKNPERSAEISL
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
YNTQKNDLIKSLTSKVLNERDKIGIDINQNLKEQEKIKKRLSKSIKGDNFYTFMKDRLSL
EECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
DILLIDEILYRFIDKIRSSIDIFSEQKDVESISDAFLLRLGQFKLYTFPKNLDNVKMHEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHH
EQMFSDYELRLNTYTEVLRYIKNHPKEVLPKNLIMEVNMDFVLNKISKVLPFTAHSLQVS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHH
KIALALMILTLLLGLRQLITWLLAKFLDWIFEIMQRNKTMHVNVQKSIVSPVSVFLALFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHH
CDIALDIFYYPNASPPKVSMWVGAVYIMLLAWLVIALFKGYGEALVTNMATKSTHNFRKE
HHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
VINLILKVVYFLIFIVTLLGVLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVIL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
LLDNSFSQGDWIVCGEVEGTVVEMGLRRTTIRAFDNALLSVPNSELAGKPIRNWSRRKVG
HHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
RRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNVSDYRYMFKKDIVSI
CEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DDFLGYKNNLFVFLDQFADSSINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHHLSF
HHHCCCCCCEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
AFPSQSLYVESLPEVSLKEGAKI
ECCCCCHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRLLLWWVLVLSLFLNPLRAVEEHETDAVDLFLIFNQINQLNQVIETYKKNPERSAEISL
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
YNTQKNDLIKSLTSKVLNERDKIGIDINQNLKEQEKIKKRLSKSIKGDNFYTFMKDRLSL
EECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
DILLIDEILYRFIDKIRSSIDIFSEQKDVESISDAFLLRLGQFKLYTFPKNLDNVKMHEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHH
EQMFSDYELRLNTYTEVLRYIKNHPKEVLPKNLIMEVNMDFVLNKISKVLPFTAHSLQVS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHH
KIALALMILTLLLGLRQLITWLLAKFLDWIFEIMQRNKTMHVNVQKSIVSPVSVFLALFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHH
CDIALDIFYYPNASPPKVSMWVGAVYIMLLAWLVIALFKGYGEALVTNMATKSTHNFRKE
HHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
VINLILKVVYFLIFIVTLLGVLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVIL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
LLDNSFSQGDWIVCGEVEGTVVEMGLRRTTIRAFDNALLSVPNSELAGKPIRNWSRRKVG
HHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
RRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNVSDYRYMFKKDIVSI
CEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DDFLGYKNNLFVFLDQFADSSINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHHLSF
HHHCCCCCCEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
AFPSQSLYVESLPEVSLKEGAKI
ECCCCCHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]