Click here to switch to the map view.

The map label for this gene is yggB [C]

Identifier: 108563388

GI number: 108563388

Start: 1010280

End: 1011104

Strand: Reverse

Name: yggB [C]

Synonym: HPAG1_0963

Alternate gene names: 108563388

Gene position: 1011104-1010280 (Counterclockwise)

Preceding gene: 108563389

Following gene: 108563387

Centisome position: 63.34

GC content: 38.06

Gene sequence:

>825_bases
ATGGATGAAATTAAAACGCTGTTAGTGGATTTTTTTCCGCAGGCAAAGCATTTTGGGATAATCTTAATCAAGGCTGTCAT
TGTCTTTTGTATAGGTTTTTATTTTTCGTTTTTCTTACGGAACAAAACCATGAAACTTTTATCCAAAAAGGATGAGATTT
TAGCGAATTTTGTCGCGCAGGTTACTTTTATCTTAATCCTTATTATCACCACAATCATTGCGCTCAGCACGCTAGGCGTG
CAAACCACCTCAATTATCACTGTTTTAGGAACGGTGGGGATTGCGGTGGCGTTGGCTTTAAAAGATTACCTTTCAAGCAT
TGCTGGAGGGATAATCCTTATTATCTTGCACCCTTTCAAAAAAGGAGACATCATTGAAATCTCTAGCCTAGAGGGCAAAG
TAGAAGCACTTAATTTTTTTAACACTTCTTTACGCTTGCATGACGGGCGTTTGGCGGTTTTACCCAATAGAAGTGTCGCC
AATTCTAATATTATTAATAGCAATAATACGGCGTGTCGGCGCATTGAATGGGTTTGTGGGGTAGGGTATGAGAGCGATAT
TGAACTGGTGCATAAGACTATAAAAGATGTTATTGACTCAATGGAAAAAATTGATAAAAACATGCCAACTTTTATTGGGA
TCACGGATTTTGGACAAAGTTCATTGAATTTCACCATTAGGGTTTGGGCAAAGATTGAAGATGGGATCTTTAATGTGAGG
AGCGAACTCATTGAACGCATCAAAAACGCCCTAGACGCTAACCACATTGAAATCCCTTTCAATAAGCTAGATATTGCTAT
TAAAAATCAAGACTCTTCTAAGTGA

Upstream 100 bases:

>100_bases
AATAAGGTTAGTCCTAAACATGCTAACATGTCAAATTAGCTACATAAGAATAAGTTATCTTGTCTCTTTTAGCGATTTTG
TGATTTGCAAGGAAAGATTT

Downstream 100 bases:

>100_bases
TTGGTGTGAGGTGTATTGATTGTGGTAATACTTGAATTTTAAAGGAGACCCTATGTCAAGCGATTTTAAAAACCTTTTCA
TCGGTGCGGATAATTCTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MDEIKTLLVDFFPQAKHFGIILIKAVIVFCIGFYFSFFLRNKTMKLLSKKDEILANFVAQVTFILILIITTIIALSTLGV
QTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFKKGDIIEISSLEGKVEALNFFNTSLRLHDGRLAVLPNRSVA
NSNIINSNNTACRRIEWVCGVGYESDIELVHKTIKDVIDSMEKIDKNMPTFIGITDFGQSSLNFTIRVWAKIEDGIFNVR
SELIERIKNALDANHIEIPFNKLDIAIKNQDSSK

Sequences:

>Translated_274_residues
MDEIKTLLVDFFPQAKHFGIILIKAVIVFCIGFYFSFFLRNKTMKLLSKKDEILANFVAQVTFILILIITTIIALSTLGV
QTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFKKGDIIEISSLEGKVEALNFFNTSLRLHDGRLAVLPNRSVA
NSNIINSNNTACRRIEWVCGVGYESDIELVHKTIKDVIDSMEKIDKNMPTFIGITDFGQSSLNFTIRVWAKIEDGIFNVR
SELIERIKNALDANHIEIPFNKLDIAIKNQDSSK
>Mature_274_residues
MDEIKTLLVDFFPQAKHFGIILIKAVIVFCIGFYFSFFLRNKTMKLLSKKDEILANFVAQVTFILILIITTIIALSTLGV
QTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFKKGDIIEISSLEGKVEALNFFNTSLRLHDGRLAVLPNRSVA
NSNIINSNNTACRRIEWVCGVGYESDIELVHKTIKDVIDSMEKIDKNMPTFIGITDFGQSSLNFTIRVWAKIEDGIFNVR
SELIERIKNALDANHIEIPFNKLDIAIKNQDSSK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=260, Percent_Identity=33.4615384615385, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI1786670, Length=220, Percent_Identity=25, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787591, Length=201, Percent_Identity=25.8706467661692, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI2367355, Length=204, Percent_Identity=19.6078431372549, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014
- InterPro:   IPR008910 [H]

Pfam domain/function: PF00924 MS_channel; PF05552 TM_helix [H]

EC number: NA

Molecular weight: Translated: 30531; Mature: 30531

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEIKTLLVDFFPQAKHFGIILIKAVIVFCIGFYFSFFLRNKTMKLLSKKDEILANFVAQ
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTFILILIITTIIALSTLGVQTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
KGDIIEISSLEGKVEALNFFNTSLRLHDGRLAVLPNRSVANSNIINSNNTACRRIEWVCG
CCCEEEEECCCCHHHHHHHHCCEEEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCC
VGYESDIELVHKTIKDVIDSMEKIDKNMPTFIGITDFGQSSLNFTIRVWAKIEDGIFNVR
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEEEHHHHHHHHH
SELIERIKNALDANHIEIPFNKLDIAIKNQDSSK
HHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCC
>Mature Secondary Structure
MDEIKTLLVDFFPQAKHFGIILIKAVIVFCIGFYFSFFLRNKTMKLLSKKDEILANFVAQ
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTFILILIITTIIALSTLGVQTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
KGDIIEISSLEGKVEALNFFNTSLRLHDGRLAVLPNRSVANSNIINSNNTACRRIEWVCG
CCCEEEEECCCCHHHHHHHHCCEEEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCC
VGYESDIELVHKTIKDVIDSMEKIDKNMPTFIGITDFGQSSLNFTIRVWAKIEDGIFNVR
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEEEHHHHHHHHH
SELIERIKNALDANHIEIPFNKLDIAIKNQDSSK
HHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]