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The map label for this gene is yjgF [C]

Identifier: 108563352

GI number: 108563352

Start: 971138

End: 971515

Strand: Reverse

Name: yjgF [C]

Synonym: HPAG1_0927

Alternate gene names: 108563352

Gene position: 971515-971138 (Counterclockwise)

Preceding gene: 108563353

Following gene: 108563351

Centisome position: 60.86

GC content: 41.27

Gene sequence:

>378_bases
ATGAAAGAAGTCATTCATTCAACGCTAGCCCCAAAAGCGATAGGTCCTTATTCTCAAGCTATCGCCACTAACGATCTTGT
TTTTGTCTCTGGGCAATTAGGCATTGATGCGAGCACCGGCGAATTTAAAGGCGCGGACATTCATTCTCAAACCACGCAGT
CAATGGAAAATATCAAAGCGATTTTAAAAGAAGCAGGGTTAGGGATGGATAGCGTGGTTAAAACGACTATTTTATTGAAA
AGTTTAGACGATTTTTCGGTGGTGAATGAAATTTATGGGAGCTATTTTACAGAGCCTTATCCGGCTAGAGCGACCTTTCA
AGTGGCTAAACTGCCTAAAGACGCTTTAGTAGAAATTGAAGCGATAGCCATTAGGTAA

Upstream 100 bases:

>100_bases
AAGATGAAAATTCATGGCGTTTTGCGCTCATTTTTTATTTCTTTTTAATTTGATTGCATAATAATAGCTGACATAACACA
TCATCATAGGAGTTTCAATC

Downstream 100 bases:

>100_bases
TTTATTAAAGGGGCTATTAGCATGAAAAAAGAAGTCGTGGTCATAGGCGGTGGGATCGTGGGGCTTTCTTGCGCGTATTC
TATGCATAAATTAGGGCATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDASTGEFKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLK
SLDDFSVVNEIYGSYFTEPYPARATFQVAKLPKDALVEIEAIAIR

Sequences:

>Translated_125_residues
MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDASTGEFKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLK
SLDDFSVVNEIYGSYFTEPYPARATFQVAKLPKDALVEIEAIAIR
>Mature_125_residues
MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDASTGEFKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLK
SLDDFSVVNEIYGSYFTEPYPARATFQVAKLPKDALVEIEAIAIR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=46.4, Blast_Score=129, Evalue=9e-31,
Organism=Escherichia coli, GI87082396, Length=128, Percent_Identity=45.3125, Blast_Score=120, Evalue=2e-29,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=45.3125, Blast_Score=120, Evalue=2e-29,
Organism=Escherichia coli, GI1787245, Length=122, Percent_Identity=30.327868852459, Blast_Score=65, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=123, Percent_Identity=52.8455284552846, Blast_Score=139, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI25148896, Length=123, Percent_Identity=52.8455284552846, Blast_Score=139, Evalue=5e-34,
Organism=Caenorhabditis elegans, GI71982068, Length=123, Percent_Identity=52.8455284552846, Blast_Score=139, Evalue=5e-34,
Organism=Saccharomyces cerevisiae, GI6322138, Length=120, Percent_Identity=34.1666666666667, Blast_Score=82, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=36, Blast_Score=69, Evalue=1e-13,
Organism=Drosophila melanogaster, GI19921376, Length=124, Percent_Identity=45.1612903225806, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13462; Mature: 13462

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDASTGEFKGADIHSQTTQSMENIKA
CHHHHHHHCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
ILKEAGLGMDSVVKTTILLKSLDDFSVVNEIYGSYFTEPYPARATFQVAKLPKDALVEIE
HHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEHHHHCCHHHHEEEE
AIAIR
EEEEC
>Mature Secondary Structure
MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDASTGEFKGADIHSQTTQSMENIKA
CHHHHHHHCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
ILKEAGLGMDSVVKTTILLKSLDDFSVVNEIYGSYFTEPYPARATFQVAKLPKDALVEIE
HHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEHHHHCCHHHHEEEE
AIAIR
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]