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The map label for this gene is yecS [C]

Identifier: 108563347

GI number: 108563347

Start: 965813

End: 966526

Strand: Reverse

Name: yecS [C]

Synonym: HPAG1_0922

Alternate gene names: 108563347

Gene position: 966526-965813 (Counterclockwise)

Preceding gene: 108563348

Following gene: 108563346

Centisome position: 60.55

GC content: 41.04

Gene sequence:

>714_bases
ATGTCAGCCAGCCATAATTTGTCTTTGTTTTTTGAATCTTTAGATTTGAGCAAGGAGCGTTTGGAATTATTATTAGAGGC
TTTCTACCCCATGCTAAAAGCCGCTTTTTGCATTTCTTTGCCTTTAGCGATCATTTCTTTCATTTTGGGCTTATTCATTG
CGGTTATGGTGGCCCTCATTAAAATCGCGCCCCCTAAACATTTCATGCATAAGGCTTTATTAGCGGGCGTGAATTTCTAT
GTCTCGCTCATTAGAGGCACGCCTTTATTGGTCCAAATTGTGGTGGTGTTTTATGGTTTGCCCGCCCTTGGGGTTTATAT
TGATCCAATCCCAGCAGGCATCATTGCGTTTTCTTTTAATGTGGGGGCATACGCTTCAGAGACTTTAAGGGCGAGTTTTC
TTTCTGTCCCTAAAGATCAATGGGATTCAAGCTTGAGCTTGGGTTTGAATTACTTGCAAACCTTTTGGCATGTCATCTTT
TTTCAAGCGCTCAAAGTCGCCACGCCAAGCCTGAGTAATACTTTCATCAGCCTTTTTAAAGAAACTTCTTTAGCTTCGGT
GGTAACTATTGCAGAGGTTTTTAGGATCGCGCAGCAAAAAGCGAACGCCAGCTATGACTTTTTGCCTATTTACTTGGAAG
CCGCTTTGATTTACTGGCTTTTTTGCTTGGTTTTAGAAGTAATCCAAAAGCACGTGGAAAAAATCTTAAATTAA

Upstream 100 bases:

>100_bases
AAGCACCAAGAAAAAGCCTTAGAGCTTATCAACCAGGCGATGCAAAGATTGATCAATAAAGGGGTTTTAAAACGCTTAAG
CGAACAATTTTTTGGAAAAG

Downstream 100 bases:

>100_bases
AGTTGGCTCAATCTAATCTCTTTAATATTTGATTATAATACAGCCTAAATAGAAATAAGGAGATTTTCATGGGTGTGTTT
TTGGATAAAAGCATTAAAGA

Product: amino acid ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSASHNLSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLFIAVMVALIKIAPPKHFMHKALLAGVNFY
VSLIRGTPLLVQIVVVFYGLPALGVYIDPIPAGIIAFSFNVGAYASETLRASFLSVPKDQWDSSLSLGLNYLQTFWHVIF
FQALKVATPSLSNTFISLFKETSLASVVTIAEVFRIAQQKANASYDFLPIYLEAALIYWLFCLVLEVIQKHVEKILN

Sequences:

>Translated_237_residues
MSASHNLSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLFIAVMVALIKIAPPKHFMHKALLAGVNFY
VSLIRGTPLLVQIVVVFYGLPALGVYIDPIPAGIIAFSFNVGAYASETLRASFLSVPKDQWDSSLSLGLNYLQTFWHVIF
FQALKVATPSLSNTFISLFKETSLASVVTIAEVFRIAQQKANASYDFLPIYLEAALIYWLFCLVLEVIQKHVEKILN
>Mature_236_residues
SASHNLSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLFIAVMVALIKIAPPKHFMHKALLAGVNFYV
SLIRGTPLLVQIVVVFYGLPALGVYIDPIPAGIIAFSFNVGAYASETLRASFLSVPKDQWDSSLSLGLNYLQTFWHVIFF
QALKVATPSLSNTFISLFKETSLASVVTIAEVFRIAQQKANASYDFLPIYLEAALIYWLFCLVLEVIQKHVEKILN

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=222, Percent_Identity=39.6396396396396, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1787030, Length=207, Percent_Identity=29.951690821256, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788646, Length=216, Percent_Identity=30.5555555555556, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI87082239, Length=165, Percent_Identity=33.9393939393939, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787086, Length=218, Percent_Identity=29.3577981651376, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787087, Length=235, Percent_Identity=26.8085106382979, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1788645, Length=230, Percent_Identity=24.7826086956522, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786873, Length=217, Percent_Identity=24.8847926267281, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1786874, Length=218, Percent_Identity=22.9357798165138, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 26401; Mature: 26269

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASHNLSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLFIAVMVALI
CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIAPPKHFMHKALLAGVNFYVSLIRGTPLLVQIVVVFYGLPALGVYIDPIPAGIIAFSFN
HCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHCEEECCCCHHHHHEECC
VGAYASETLRASFLSVPKDQWDSSLSLGLNYLQTFWHVIFFQALKVATPSLSNTFISLFK
CCHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ETSLASVVTIAEVFRIAQQKANASYDFLPIYLEAALIYWLFCLVLEVIQKHVEKILN
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SASHNLSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLFIAVMVALI
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIAPPKHFMHKALLAGVNFYVSLIRGTPLLVQIVVVFYGLPALGVYIDPIPAGIIAFSFN
HCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHCEEECCCCHHHHHEECC
VGAYASETLRASFLSVPKDQWDSSLSLGLNYLQTFWHVIFFQALKVATPSLSNTFISLFK
CCHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ETSLASVVTIAEVFRIAQQKANASYDFLPIYLEAALIYWLFCLVLEVIQKHVEKILN
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]