| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is coaX
Identifier: 108563270
GI number: 108563270
Start: 879837
End: 880508
Strand: Reverse
Name: coaX
Synonym: HPAG1_0845
Alternate gene names: 108563270
Gene position: 880508-879837 (Counterclockwise)
Preceding gene: 108563271
Following gene: 108563269
Centisome position: 55.16
GC content: 39.43
Gene sequence:
>672_bases ATGCCAGCTAGGCAATCTTTTACAGATTTGAAAAACCTGGTTTTATGCGATATAGGCAATACGCACATCCATTTCGCGCA AAATTATCAGCTCTTTTCAAGCGCTAAAGAAGATTTAAAGCGTTTGGGTATTCAAAAGGAAATTTTTTACATTAGCGTGA ATGAAGAAAATGAAAAAGCCCTTTTGAATTGTTATCCTAACGCTAAAAATATTGCAGGATTTTTTCATTTAGAAACCGAC TATATAGGGCTTGGGATAGACCGGCAAATGGCGTGTTTGGCGGTAAATAATGGCGTGGTGGTGGATGCGGGGAGCGCGAT TACGATTGATTTAGTCAAAGAGGGCAAGCATTTAGGAGGGTGTATTTTACCCGGTTTAGCCCAATATATTCATGCGTATA AAAAAAGCGCTAAAATCTTAGAGCAACCTTTCAAGACCTTAGACTCTTTAGAGATTTTACCTAAAAACACCAGAGACGCT GTGAATTACGGCATGATTTTGAGCGTCATCTCTTGTATCCAGCATTTAGCCAAAAATCAAAAAATCTATCTTTGTGGGGG CGATGCGAAGTATTTGAGCGCGTTTTTACCCCATTCTGTTTGCAAGGAGCGCTTGGTTTTTGATGGGATGGAAATCGCTC TTAAAAAAGCAGGGATACTAGAATGCAAATGA
Upstream 100 bases:
>100_bases GCTAGAGAATTTGAACAAAGAGCAAGAGAGCATCAAGAAAGAGATGAAAAAGAGCTTGAAGAAAGAAAAAAAGCTTTAGA AATGAATAAGAAGTGAGTCT
Downstream 100 bases:
>100_bases TGCACCATTTGAGTTTTTTGGGCATGTTTTTAGCCGCTTTGAGCATGTCTTTAGGTCATTGTGTGGGCATGTGTGGGGGG ATTGTGAGCGCGTTCAGTCA
Product: pantothenate kinase
Products: NA
Alternate protein names: PanK-III; Pantothenic acid kinase
Number of amino acids: Translated: 223; Mature: 222
Protein sequence:
>223_residues MPARQSFTDLKNLVLCDIGNTHIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKALLNCYPNAKNIAGFFHLETD YIGLGIDRQMACLAVNNGVVVDAGSAITIDLVKEGKHLGGCILPGLAQYIHAYKKSAKILEQPFKTLDSLEILPKNTRDA VNYGMILSVISCIQHLAKNQKIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK
Sequences:
>Translated_223_residues MPARQSFTDLKNLVLCDIGNTHIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKALLNCYPNAKNIAGFFHLETD YIGLGIDRQMACLAVNNGVVVDAGSAITIDLVKEGKHLGGCILPGLAQYIHAYKKSAKILEQPFKTLDSLEILPKNTRDA VNYGMILSVISCIQHLAKNQKIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK >Mature_222_residues PARQSFTDLKNLVLCDIGNTHIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKALLNCYPNAKNIAGFFHLETDY IGLGIDRQMACLAVNNGVVVDAGSAITIDLVKEGKHLGGCILPGLAQYIHAYKKSAKILEQPFKTLDSLEILPKNTRDAV NYGMILSVISCIQHLAKNQKIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK
Specific function: Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
COG id: COG1521
COG function: function code K; Putative transcriptional regulator, homolog of Bvg accessory factor
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the type III pantothenate kinase family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): COAX_HELPH (Q1CT10)
Other databases:
- EMBL: CP000241 - RefSeq: YP_627586.1 - ProteinModelPortal: Q1CT10 - SMR: Q1CT10 - STRING: Q1CT10 - GeneID: 4097873 - GenomeReviews: CP000241_GR - KEGG: hpa:HPAG1_0845 - eggNOG: COG1521 - HOGENOM: HBG321208 - OMA: LCDIGNT - ProtClustDB: PRK13333 - BioCyc: HPYL357544:HPAG1_0845-MONOMER - GO: GO:0005737 - HAMAP: MF_01274 - InterPro: IPR004619 - TIGRFAMs: TIGR00671
Pfam domain/function: PF03309 Bvg_acc_factor
EC number: =2.7.1.33
Molecular weight: Translated: 24737; Mature: 24606
Theoretical pI: Translated: 8.00; Mature: 8.00
Prosite motif: NA
Important sites: ACT_SITE 87-87 BINDING 81-81 BINDING 105-105 BINDING 157-157
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPARQSFTDLKNLVLCDIGNTHIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKA CCCCCHHHHHHHEEEEECCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCE LLNCYPNAKNIAGFFHLETDYIGLGIDRQMACLAVNNGVVVDAGSAITIDLVKEGKHLGG EEEECCCCCCCEEEEEEECCEEEECCCCCEEEEEECCCEEEECCCEEEEEEECCCCCCCC CILPGLAQYIHAYKKSAKILEQPFKTLDSLEILPKNTRDAVNYGMILSVISCIQHLAKNQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC KIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK EEEEECCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCCCCC >Mature Secondary Structure PARQSFTDLKNLVLCDIGNTHIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKA CCCCHHHHHHHEEEEECCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCE LLNCYPNAKNIAGFFHLETDYIGLGIDRQMACLAVNNGVVVDAGSAITIDLVKEGKHLGG EEEECCCCCCCEEEEEEECCEEEECCCCCEEEEEECCCEEEECCCEEEEEEECCCCCCCC CILPGLAQYIHAYKKSAKILEQPFKTLDSLEILPKNTRDAVNYGMILSVISCIQHLAKNQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC KIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK EEEEECCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA