Click here to switch to the map view.

The map label for this gene is pgbB [H]

Identifier: 108563271

GI number: 108563271

Start: 880513

End: 882189

Strand: Reverse

Name: pgbB [H]

Synonym: HPAG1_0846

Alternate gene names: 108563271

Gene position: 882189-880513 (Counterclockwise)

Preceding gene: 108563272

Following gene: 108563270

Centisome position: 55.26

GC content: 37.45

Gene sequence:

>1677_bases
TTGATGAATAAACAATTTGTAATCTTACTCATAGCCCTAATTGCTTTTAGCGGCTGTAACATGAGAAAATACTTCAAACC
CGCTAAACACCAAATTAAAGGCGAAGCGTATTTCCCTAACCATTTGCAAGAAAGTATCGTTTCGTCTAATCGTTATGGAG
CCATTTTGAAAAATGGAGCGGTTATAGGCGATAAAGGTTTAACGCAATTAAGAATCGGTAAGAATTTCAATTACGAAAGC
AGTTTTTTAAATGAGAGTCAAGGGTTTTTCATCCTTGCGCAAGATTGTTTGAACAAGATTGATAAAAAAACAAGCAAAAG
CAAGGTGGCTAAGACTGAAGAAACGGAATTGAAATTAAAGGGCGTTGAAGCGGAAGTCCAAGATAAGGTCTGTCATCAAG
TGGAATTGATTAGCAATAACCCTAACGCCAGCCAACAATCTATCGTTATTCCTTTGGAGACTTTTGCCTTGAGTGCGAGC
GTTAAAGGGAATCTTTTAGCGGTGGTGTTAGCGGACAATTCAGCGAATTTATACGACATCACTTCTCAAAAATTGCTTTT
TAGCGAGAAAGGTTCCCCAAGCACCACGATCAATTCTTTAATGGCGATGCCTATTTTTATGGATACGGTCGTGGTATTCC
CCATGCTAGATGGGCGCTTGTTAGTCGTGGATTATGTGCATGGAAACCCTACGCCTATTAGAAACATTGTTATCAGTAGC
GATAAGTTTTTTAACAATATCACCTACCTTATCGTAGATGGCAATAACATGATCGCTTCTACAGGGAAAAGGATACTCTC
AGTGGTGAGCGGTCAAGAGTTCAACTATGATGGGGATATTGTGGATTTGCTTTATGATAAGGGGACTTTATATGTGCTCA
CGCTAGACGGGCAAATTTTGCAAATGGATAAGAGTTTGAGGGAATTAAACAGCGTGAAACTGCCCTTTGCTTCGCTCAAT
ACTATTGTATTAAACCATAATAAATTGTATTCTTTAGAAAAGCGTGGGTATGTGATAGAGGTGGATTTGAATGATTTTGA
TTTGTATAATGTCTATAAAGCGCCAACTATAGGCAGTTTTAAGTTTTTTTCATCTAATCGTTTGGATAAAGGGGTGTTTT
ATGATAAAAATCGGGTGTATTACGATCGTTACTATTTAGATTATAACGATTTTAAACCAAAACTTTATCCCGTTGTGGAA
AAACCGGCATCTAAAAAATCTCAAAAAGGCGAAAAAGGGAACGCTCCTATTTATTTGCAAGAAAGGCATAAAGCTAAAGA
AAAGCCTTTAGAAGAAAACAAAGTTAAGCCAAGAAATAGCGGGTTTGAAGAAGAAGAAGTTAAAACCAGAAGGCGCGATA
TGGAGCCTATTAACAATCAAAATAACGCTATCCAAAAAGGCGTAAAAGAAAATCAAGAAAACAAAAACGCTCCTGCTTCA
AAAGAGGGTAACCAAAAAGGCGCAAAAAACGCTCCTGCTTCAAAAGAGAATAACGCTATTAAAGAAGCGCCAAAACTCAG
CCCTAAAGAAGAAAAACGCCGCTTGAAAGAAGAAAAGAAAAAAGCCAAAGCCGAACAAAGGGCTAGAGAATTTGAACAAA
GAGCAAGAGAGCATCAAGAAAGAGATGAAAAAGAGCTTGAAGAAAGAAAAAAAGCTTTAGAAATGAATAAGAAGTGA

Upstream 100 bases:

>100_bases
ATCTCTGTTTTAAAACATTATGGAATGTTAGAAGATATTCAGCAAAACCCTTCCAAACCAACCAATCTAAAGAAAGAAAC
CATTCAAGGAACGCATTGAT

Downstream 100 bases:

>100_bases
GTCTATGCCAGCTAGGCAATCTTTTACAGATTTGAAAAACCTGGTTTTATGCGATATAGGCAATACGCACATCCATTTCG
CGCAAAATTATCAGCTCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 558; Mature: 558

Protein sequence:

>558_residues
MMNKQFVILLIALIAFSGCNMRKYFKPAKHQIKGEAYFPNHLQESIVSSNRYGAILKNGAVIGDKGLTQLRIGKNFNYES
SFLNESQGFFILAQDCLNKIDKKTSKSKVAKTEETELKLKGVEAEVQDKVCHQVELISNNPNASQQSIVIPLETFALSAS
VKGNLLAVVLADNSANLYDITSQKLLFSEKGSPSTTINSLMAMPIFMDTVVVFPMLDGRLLVVDYVHGNPTPIRNIVISS
DKFFNNITYLIVDGNNMIASTGKRILSVVSGQEFNYDGDIVDLLYDKGTLYVLTLDGQILQMDKSLRELNSVKLPFASLN
TIVLNHNKLYSLEKRGYVIEVDLNDFDLYNVYKAPTIGSFKFFSSNRLDKGVFYDKNRVYYDRYYLDYNDFKPKLYPVVE
KPASKKSQKGEKGNAPIYLQERHKAKEKPLEENKVKPRNSGFEEEEVKTRRRDMEPINNQNNAIQKGVKENQENKNAPAS
KEGNQKGAKNAPASKENNAIKEAPKLSPKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERKKALEMNKK

Sequences:

>Translated_558_residues
MMNKQFVILLIALIAFSGCNMRKYFKPAKHQIKGEAYFPNHLQESIVSSNRYGAILKNGAVIGDKGLTQLRIGKNFNYES
SFLNESQGFFILAQDCLNKIDKKTSKSKVAKTEETELKLKGVEAEVQDKVCHQVELISNNPNASQQSIVIPLETFALSAS
VKGNLLAVVLADNSANLYDITSQKLLFSEKGSPSTTINSLMAMPIFMDTVVVFPMLDGRLLVVDYVHGNPTPIRNIVISS
DKFFNNITYLIVDGNNMIASTGKRILSVVSGQEFNYDGDIVDLLYDKGTLYVLTLDGQILQMDKSLRELNSVKLPFASLN
TIVLNHNKLYSLEKRGYVIEVDLNDFDLYNVYKAPTIGSFKFFSSNRLDKGVFYDKNRVYYDRYYLDYNDFKPKLYPVVE
KPASKKSQKGEKGNAPIYLQERHKAKEKPLEENKVKPRNSGFEEEEVKTRRRDMEPINNQNNAIQKGVKENQENKNAPAS
KEGNQKGAKNAPASKENNAIKEAPKLSPKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERKKALEMNKK
>Mature_558_residues
MMNKQFVILLIALIAFSGCNMRKYFKPAKHQIKGEAYFPNHLQESIVSSNRYGAILKNGAVIGDKGLTQLRIGKNFNYES
SFLNESQGFFILAQDCLNKIDKKTSKSKVAKTEETELKLKGVEAEVQDKVCHQVELISNNPNASQQSIVIPLETFALSAS
VKGNLLAVVLADNSANLYDITSQKLLFSEKGSPSTTINSLMAMPIFMDTVVVFPMLDGRLLVVDYVHGNPTPIRNIVISS
DKFFNNITYLIVDGNNMIASTGKRILSVVSGQEFNYDGDIVDLLYDKGTLYVLTLDGQILQMDKSLRELNSVKLPFASLN
TIVLNHNKLYSLEKRGYVIEVDLNDFDLYNVYKAPTIGSFKFFSSNRLDKGVFYDKNRVYYDRYYLDYNDFKPKLYPVVE
KPASKKSQKGEKGNAPIYLQERHKAKEKPLEENKVKPRNSGFEEEEVKTRRRDMEPINNQNNAIQKGVKENQENKNAPAS
KEGNQKGAKNAPASKENNAIKEAPKLSPKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERKKALEMNKK

Specific function: Binds plasminogen, specifically, and in a concentration and lysine-dependent manner. Plasminogen is the precursor of plasmin, a serine protease that cleaves fibrin, fibronectin, laminin and vitronectin. Acquisition of plasminogen/plasmin could enable H.py

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell surface (Probable). Note=The plasminogen-binding region is localized on the surface the bacterium (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015943
- InterPro:   IPR011046 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63500; Mature: 63500

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNKQFVILLIALIAFSGCNMRKYFKPAKHQIKGEAYFPNHLQESIVSSNRYGAILKNGA
CCCCHHHHHHHHHHHHCCCCCHHHHCCHHHHCCCCCCCCHHHHHHHHCCCCCCEEEECCE
VIGDKGLTQLRIGKNFNYESSFLNESQGFFILAQDCLNKIDKKTSKSKVAKTEETELKLK
EECCCCCEEEEECCCCCCCHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEE
GVEAEVQDKVCHQVELISNNPNASQQSIVIPLETFALSASVKGNLLAVVLADNSANLYDI
CCCHHHHHHHHHEEEEECCCCCCCCCEEEEEEHHEEEEEECCCCEEEEEEECCCCCEEEC
TSQKLLFSEKGSPSTTINSLMAMPIFMDTVVVFPMLDGRLLVVDYVHGNPTPIRNIVISS
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEECC
DKFFNNITYLIVDGNNMIASTGKRILSVVSGQEFNYDGDIVDLLYDKGTLYVLTLDGQIL
CCCCCCEEEEEECCCCEEHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEECCHHH
QMDKSLRELNSVKLPFASLNTIVLNHNKLYSLEKRGYVIEVDLNDFDLYNVYKAPTIGSF
HHHHHHHHHHCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCE
KFFSSNRLDKGVFYDKNRVYYDRYYLDYNDFKPKLYPVVEKPASKKSQKGEKGNAPIYLQ
EECCCCCCCCCEEECCCEEEEEEEEEECCCCCCCEEEECCCCCCHHHCCCCCCCCCEEEE
ERHKAKEKPLEENKVKPRNSGFEEEEVKTRRRDMEPINNQNNAIQKGVKENQENKNAPAS
CHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCC
KEGNQKGAKNAPASKENNAIKEAPKLSPKEEKRRLKEEKKKAKAEQRAREFEQRAREHQE
CCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDEKELEERKKALEMNKK
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMNKQFVILLIALIAFSGCNMRKYFKPAKHQIKGEAYFPNHLQESIVSSNRYGAILKNGA
CCCCHHHHHHHHHHHHCCCCCHHHHCCHHHHCCCCCCCCHHHHHHHHCCCCCCEEEECCE
VIGDKGLTQLRIGKNFNYESSFLNESQGFFILAQDCLNKIDKKTSKSKVAKTEETELKLK
EECCCCCEEEEECCCCCCCHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEE
GVEAEVQDKVCHQVELISNNPNASQQSIVIPLETFALSASVKGNLLAVVLADNSANLYDI
CCCHHHHHHHHHEEEEECCCCCCCCCEEEEEEHHEEEEEECCCCEEEEEEECCCCCEEEC
TSQKLLFSEKGSPSTTINSLMAMPIFMDTVVVFPMLDGRLLVVDYVHGNPTPIRNIVISS
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEECC
DKFFNNITYLIVDGNNMIASTGKRILSVVSGQEFNYDGDIVDLLYDKGTLYVLTLDGQIL
CCCCCCEEEEEECCCCEEHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEECCHHH
QMDKSLRELNSVKLPFASLNTIVLNHNKLYSLEKRGYVIEVDLNDFDLYNVYKAPTIGSF
HHHHHHHHHHCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCE
KFFSSNRLDKGVFYDKNRVYYDRYYLDYNDFKPKLYPVVEKPASKKSQKGEKGNAPIYLQ
EECCCCCCCCCEEECCCEEEEEEEEEECCCCCCCEEEECCCCCCHHHCCCCCCCCCEEEE
ERHKAKEKPLEENKVKPRNSGFEEEEVKTRRRDMEPINNQNNAIQKGVKENQENKNAPAS
CHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCC
KEGNQKGAKNAPASKENNAIKEAPKLSPKEEKRRLKEEKKKAKAEQRAREFEQRAREHQE
CCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDEKELEERKKALEMNKK
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]