| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108563177
Identifier: 108563177
GI number: 108563177
Start: 786690
End: 788240
Strand: Reverse
Name: 108563177
Synonym: HPAG1_0752
Alternate gene names: NA
Gene position: 788240-786690 (Counterclockwise)
Preceding gene: 108563178
Following gene: 108563176
Centisome position: 49.38
GC content: 42.55
Gene sequence:
>1551_bases ATGAAAAAAGATCGAGAAAAAAAACAAAAATACAACAACATTACAGACGCAACCATCATGGGTTCAACTGGCGAAGAGAG TGCACTTCATGCTAGTGCTAATAGAGAGCATTTTTCTGCCTGGGATAGATTAGAAGAGATCTCAAAAAGGAAGATAAACC CTAACTATATTAAACAAAATATCAACCAACAGGCGGGGTATTCTGCTGAAATCAAAGAGCAAGCCCATGTTAATGCGCAT AATATCCTTGCAGGAAAAAGAGAAAGGATAGTGCAGTATGACAATCTTTCTAGCGGGCAAAAGGCTCAGGTTAAAAAGCT TTTCCCAAACTATGCCACGCCCAAGAAGAATCACGAAATCGTGGATTATGCCAGTGTGGATGAAAAGGGGAATGTCATTC CTGGCACGCTCACGCAAAGTAAATTTGTGGGCAGAAATGGTGAGGAGTGTTTTAAAAAACTCTTATCTAAAGACTATGAA AAATACTTTGAAAACGGTGCGAAGATGAAAATCGCTAGGAATCATTATGGGGATTTTCAAAGAGCGGTCAATACTAGGAT CAAGAGCCTAGAATCTCAAATCGCTAAACAAAAGGGGCTTGGCGATTTTCAAAAAGCCGCTCATTTAGAGGAAAAACTCC AAAAATGCAAAACAATCAAAGCCCATACAAGGCCTGCGAGTACCACTAAAGCAGAGGCGATTGAAGCCAGATTGAACCCA AATCTCTCCACTGCCAAAGATGTTACCAGCATTTCGCATCAAGCAGGAATGAACGCCGCACAAACCGGTGCGTGGATAGG TGGTTGGGTCTCACTCGTAACGAATGTTTATGAATGTATCGCAAATGGCAAGGATCCTATGAAGGCGATCAAGCACACCG CCATTGCTACCCTAAAGGGTGGAGTGCTTAGTTATTGTAGCGCGTTTGCAAGCTCATCTTTGGGAGGTTTGGTGCAAAGC AGCGCTAATAGAATCATCCAAAGCCTTGGCAAGGGCTCAGCACCTGCGATGATTGTGGGTGCTTGTGTGGCAAATGCTAC GGTTTTAACTCGCTATTTTTCTGGAAAGATTGATGGAACAGAGCTTTGCAAACAACTTGTGAAAGCTAACACCACTCTTG TAAGTAGTGGGGCTATGGCAGTTGCTGGGCAAGCGCTCATCCCTATTCCTGTGGTTGGGGCGTTGGTTGGGGGCTTTGTG GGCGCAGTGTTGAGCGAAACTTGTTTTAACGCCCTTCTAAAGGCTCGTGAAGAGGCTAAATTGGCACGCCAAAGGCGTAT TGAGATTGAAAGAGAATGCCGTGAAATCATCAAGCTGTTAGAGACATATCAAAATCAATTTAAGGAGGTGTTTGAGAAAT ATTTTCATGAAACTACAAAGTTTTTCAATCAGAGTTTTGATGATCTGGAGAGGGCGCTTTATGCGGGCGATGCGGATTTG GCTATAGCAGTCAATAACAAATCCCGAGAATGGTTGGGTCAAAAGGCGTTATTTGATAATAAACAAGAAAGTTGGGAATT GATTATTAGTAATAAAGACATAAGAATGTAA
Upstream 100 bases:
>100_bases TTTATCCCTAGTCTTTCGGGGGGGGGGTTACTTATAAGCCTACCCTAAAATCCCCAAAATTTCTCGCTTTTTTTAAATCT TTCTTTTTTGGAGTTGAGTC
Downstream 100 bases:
>100_bases AGGAGAAAAACATGGATAAAAATAGAGTTCATGCGATTATAGCTAATGCGGTAGAAAGTGGTGGCTCTTTTAGCTCAAGC GATCGATCAAAATTCGCATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 516; Mature: 516
Protein sequence:
>516_residues MKKDREKKQKYNNITDATIMGSTGEESALHASANREHFSAWDRLEEISKRKINPNYIKQNINQQAGYSAEIKEQAHVNAH NILAGKRERIVQYDNLSSGQKAQVKKLFPNYATPKKNHEIVDYASVDEKGNVIPGTLTQSKFVGRNGEECFKKLLSKDYE KYFENGAKMKIARNHYGDFQRAVNTRIKSLESQIAKQKGLGDFQKAAHLEEKLQKCKTIKAHTRPASTTKAEAIEARLNP NLSTAKDVTSISHQAGMNAAQTGAWIGGWVSLVTNVYECIANGKDPMKAIKHTAIATLKGGVLSYCSAFASSSLGGLVQS SANRIIQSLGKGSAPAMIVGACVANATVLTRYFSGKIDGTELCKQLVKANTTLVSSGAMAVAGQALIPIPVVGALVGGFV GAVLSETCFNALLKAREEAKLARQRRIEIERECREIIKLLETYQNQFKEVFEKYFHETTKFFNQSFDDLERALYAGDADL AIAVNNKSREWLGQKALFDNKQESWELIISNKDIRM
Sequences:
>Translated_516_residues MKKDREKKQKYNNITDATIMGSTGEESALHASANREHFSAWDRLEEISKRKINPNYIKQNINQQAGYSAEIKEQAHVNAH NILAGKRERIVQYDNLSSGQKAQVKKLFPNYATPKKNHEIVDYASVDEKGNVIPGTLTQSKFVGRNGEECFKKLLSKDYE KYFENGAKMKIARNHYGDFQRAVNTRIKSLESQIAKQKGLGDFQKAAHLEEKLQKCKTIKAHTRPASTTKAEAIEARLNP NLSTAKDVTSISHQAGMNAAQTGAWIGGWVSLVTNVYECIANGKDPMKAIKHTAIATLKGGVLSYCSAFASSSLGGLVQS SANRIIQSLGKGSAPAMIVGACVANATVLTRYFSGKIDGTELCKQLVKANTTLVSSGAMAVAGQALIPIPVVGALVGGFV GAVLSETCFNALLKAREEAKLARQRRIEIERECREIIKLLETYQNQFKEVFEKYFHETTKFFNQSFDDLERALYAGDADL AIAVNNKSREWLGQKALFDNKQESWELIISNKDIRM >Mature_516_residues MKKDREKKQKYNNITDATIMGSTGEESALHASANREHFSAWDRLEEISKRKINPNYIKQNINQQAGYSAEIKEQAHVNAH NILAGKRERIVQYDNLSSGQKAQVKKLFPNYATPKKNHEIVDYASVDEKGNVIPGTLTQSKFVGRNGEECFKKLLSKDYE KYFENGAKMKIARNHYGDFQRAVNTRIKSLESQIAKQKGLGDFQKAAHLEEKLQKCKTIKAHTRPASTTKAEAIEARLNP NLSTAKDVTSISHQAGMNAAQTGAWIGGWVSLVTNVYECIANGKDPMKAIKHTAIATLKGGVLSYCSAFASSSLGGLVQS SANRIIQSLGKGSAPAMIVGACVANATVLTRYFSGKIDGTELCKQLVKANTTLVSSGAMAVAGQALIPIPVVGALVGGFV GAVLSETCFNALLKAREEAKLARQRRIEIERECREIIKLLETYQNQFKEVFEKYFHETTKFFNQSFDDLERALYAGDADL AIAVNNKSREWLGQKALFDNKQESWELIISNKDIRM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57095; Mature: 57095
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKDREKKQKYNNITDATIMGSTGEESALHASANREHFSAWDRLEEISKRKINPNYIKQN CCCHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH INQQAGYSAEIKEQAHVNAHNILAGKRERIVQYDNLSSGQKAQVKKLFPNYATPKKNHEI CHHHCCCCHHHHHHHCCCHHHHHHCCHHHHEECCCCCCCCHHHHHHHCCCCCCCCCCCCE VDYASVDEKGNVIPGTLTQSKFVGRNGEECFKKLLSKDYEKYFENGAKMKIARNHYGDFQ EEECCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHH RAVNTRIKSLESQIAKQKGLGDFQKAAHLEEKLQKCKTIKAHTRPASTTKAEAIEARLNP HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC NLSTAKDVTSISHQAGMNAAQTGAWIGGWVSLVTNVYECIANGKDPMKAIKHTAIATLKG CCCHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC GVLSYCSAFASSSLGGLVQSSANRIIQSLGKGSAPAMIVGACVANATVLTRYFSGKIDGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH ELCKQLVKANTTLVSSGAMAVAGQALIPIPVVGALVGGFVGAVLSETCFNALLKAREEAK HHHHHHHHCCCHHEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LARQRRIEIERECREIIKLLETYQNQFKEVFEKYFHETTKFFNQSFDDLERALYAGDADL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCE AIAVNNKSREWLGQKALFDNKQESWELIISNKDIRM EEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC >Mature Secondary Structure MKKDREKKQKYNNITDATIMGSTGEESALHASANREHFSAWDRLEEISKRKINPNYIKQN CCCHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH INQQAGYSAEIKEQAHVNAHNILAGKRERIVQYDNLSSGQKAQVKKLFPNYATPKKNHEI CHHHCCCCHHHHHHHCCCHHHHHHCCHHHHEECCCCCCCCHHHHHHHCCCCCCCCCCCCE VDYASVDEKGNVIPGTLTQSKFVGRNGEECFKKLLSKDYEKYFENGAKMKIARNHYGDFQ EEECCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHH RAVNTRIKSLESQIAKQKGLGDFQKAAHLEEKLQKCKTIKAHTRPASTTKAEAIEARLNP HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC NLSTAKDVTSISHQAGMNAAQTGAWIGGWVSLVTNVYECIANGKDPMKAIKHTAIATLKG CCCHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC GVLSYCSAFASSSLGGLVQSSANRIIQSLGKGSAPAMIVGACVANATVLTRYFSGKIDGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH ELCKQLVKANTTLVSSGAMAVAGQALIPIPVVGALVGGFVGAVLSETCFNALLKAREEAK HHHHHHHHCCCHHEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LARQRRIEIERECREIIKLLETYQNQFKEVFEKYFHETTKFFNQSFDDLERALYAGDADL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCE AIAVNNKSREWLGQKALFDNKQESWELIISNKDIRM EEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA