| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108563140
Identifier: 108563140
GI number: 108563140
Start: 752960
End: 754678
Strand: Reverse
Name: 108563140
Synonym: HPAG1_0715
Alternate gene names: NA
Gene position: 754678-752960 (Counterclockwise)
Preceding gene: 108563141
Following gene: 108563139
Centisome position: 47.27
GC content: 37.11
Gene sequence:
>1719_bases ATGAATGAAACGCTAGAACAATTTAAAGCAAACCAAAAGAGGAATCAAGAAAATCTTAAAAAATTGCTTGATTTTATCCA TACTGGAGAGAAATACGGAATCCAGATTGAAGAGTCCCTCAAAGACAAAATCCGTAATGCGATAAAAAATGTTGCCGATC AGAAACTGAAAGTGGCTTTAGTGGGAGGTTTTTCTGAAGGAAAAACATCTATAGCGGCAGCTTGGATCGATCGCTTGGAT GAGAGCATGAAGATAGACCACAAAGAATCCAGCGATGCAGTTAAAATCTATGACATAGACAATGAAATGGAGCTGGTTGA TACCCCGGGATTATTCGGGTTCAAACAAAAAGAACACGATAGCGGCAAAATAGAGCACTATAAAGATATTACCAAAAAAT ATGTCAGCGAAGCCCATCTCATTTTATACGCGCTCAACCCGTCAAACCCTATCAAAGAAAGCCATAAGGACGATTTGAAT TGGTTGTTCAGGACGCTCAATCTTTTATCTAGGACGATTTTTGTCATCAGCCGTTTTGATGAAGAAGCGGATATTGAAGA TGAACAAGATTACAACAAAAGATTTAAAATCAAAAAAGAAAACATTCAAAACCGACTGAATGAGCTGATTTCTTTAAGCG AAGAAGAAAAAGAAAGTTTGATTATTGTCGCTGTTGCGGCAAACCCTTTTGATTTGGGGGTGGAACACTGGCTAAAGCAT CAAGAAGAATTCCAGAAACTCTCACACATCAAAACTTTGCAAGACGCGACGCAAAAAAAGATTGAAGAAAATGGCGGGAA ATTAACCATCATAGAAGAAGCCAAAAAAAGCGTCATTCAAGATGTTATCTATAGGCAAATGCCGCTTGCAAAAAAAGAGC AACAAGAGATTAAGAGAGAAATGGAATATTTGAATAAAACGCTTGAAAAAAGGCGAAAAGAGATTCAAAATTTAAATAGT GAAATTTCTCAAGCCCGCATTTATTTAAGAGAATTTATAACGAGGTATTTTAGCGATCTCATCGCTCAAGTTTCTGGCAC CAGCCTAGAAACCTTTAATGATTTTGTTATTAGAGAAATAGGCGATGAAGGTATTAATATAGACACAAGAGTCCAAAATG CATTTGAAAGAGAAACGCAAGGGATCTTCAATGAAATTTCTAAAATTGAAACGATTTTTAACGCCGATAGGAGTTTTTTT GAAAAACATGCCGGAGCGTTGGGGAAAATTGGAATCAATTTTTTAAATCAAAGCGGTTTTATCAATGCAACTAACATCAA ACTGGCTAGAGACACGATAGCGGCTGCGGGAAAATTTGTGGGCATAGATTGGGCTTTGAAATTCAAACCTTGGGGCGCTG TAAAATTGGCAGGCAATTTGAACAAATTTTTACCGCTTATTGGTCTTGCTTTTGAAATGTGGGATTCTTGGAAAGAAAGC CAAAAAATAGAAAAACTTGAAAAAGCTAAAGGAGAAATGGAATCTAATTTTGACGGACAAAAACAAGAAATCTTGGATCT CATCAACGATGAAACCAGATTCAAACAAACATGTTTCCCAATGGCGTTGGAACTGGAAAAATGCATTCAAGAATGCGAAG AAAGCGTTAAAAAAACGCAAGAGTGCGCTCAAGGTCTGGAAAAATGGATTCAAACTGGCGAGGATTTCATCAAGGGCGAA GATTTTATAGAAGTTGAGCCTGAAAGAGGCATGAACTGA
Upstream 100 bases:
>100_bases TTTGTTACGAGCGCATGAGGGAAGGGCTAATAAAGGCCGGTGAAGACTTATGGCACTTAGATAATCGCATCAAAACCACA TTAAAACAAAGGATCGCGCA
Downstream 100 bases:
>100_bases ATTTGTGTTAAAATACCGAATGTGCCAACGCTAGAACGCTTGCTAGTTTTTGGCTAGTAAGCGGTGTTTTAAATCTTTTA AAGGAAAAGCGATGTTTTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 572; Mature: 572
Protein sequence:
>572_residues MNETLEQFKANQKRNQENLKKLLDFIHTGEKYGIQIEESLKDKIRNAIKNVADQKLKVALVGGFSEGKTSIAAAWIDRLD ESMKIDHKESSDAVKIYDIDNEMELVDTPGLFGFKQKEHDSGKIEHYKDITKKYVSEAHLILYALNPSNPIKESHKDDLN WLFRTLNLLSRTIFVISRFDEEADIEDEQDYNKRFKIKKENIQNRLNELISLSEEEKESLIIVAVAANPFDLGVEHWLKH QEEFQKLSHIKTLQDATQKKIEENGGKLTIIEEAKKSVIQDVIYRQMPLAKKEQQEIKREMEYLNKTLEKRRKEIQNLNS EISQARIYLREFITRYFSDLIAQVSGTSLETFNDFVIREIGDEGINIDTRVQNAFERETQGIFNEISKIETIFNADRSFF EKHAGALGKIGINFLNQSGFINATNIKLARDTIAAAGKFVGIDWALKFKPWGAVKLAGNLNKFLPLIGLAFEMWDSWKES QKIEKLEKAKGEMESNFDGQKQEILDLINDETRFKQTCFPMALELEKCIQECEESVKKTQECAQGLEKWIQTGEDFIKGE DFIEVEPERGMN
Sequences:
>Translated_572_residues MNETLEQFKANQKRNQENLKKLLDFIHTGEKYGIQIEESLKDKIRNAIKNVADQKLKVALVGGFSEGKTSIAAAWIDRLD ESMKIDHKESSDAVKIYDIDNEMELVDTPGLFGFKQKEHDSGKIEHYKDITKKYVSEAHLILYALNPSNPIKESHKDDLN WLFRTLNLLSRTIFVISRFDEEADIEDEQDYNKRFKIKKENIQNRLNELISLSEEEKESLIIVAVAANPFDLGVEHWLKH QEEFQKLSHIKTLQDATQKKIEENGGKLTIIEEAKKSVIQDVIYRQMPLAKKEQQEIKREMEYLNKTLEKRRKEIQNLNS EISQARIYLREFITRYFSDLIAQVSGTSLETFNDFVIREIGDEGINIDTRVQNAFERETQGIFNEISKIETIFNADRSFF EKHAGALGKIGINFLNQSGFINATNIKLARDTIAAAGKFVGIDWALKFKPWGAVKLAGNLNKFLPLIGLAFEMWDSWKES QKIEKLEKAKGEMESNFDGQKQEILDLINDETRFKQTCFPMALELEKCIQECEESVKKTQECAQGLEKWIQTGEDFIKGE DFIEVEPERGMN >Mature_572_residues MNETLEQFKANQKRNQENLKKLLDFIHTGEKYGIQIEESLKDKIRNAIKNVADQKLKVALVGGFSEGKTSIAAAWIDRLD ESMKIDHKESSDAVKIYDIDNEMELVDTPGLFGFKQKEHDSGKIEHYKDITKKYVSEAHLILYALNPSNPIKESHKDDLN WLFRTLNLLSRTIFVISRFDEEADIEDEQDYNKRFKIKKENIQNRLNELISLSEEEKESLIIVAVAANPFDLGVEHWLKH QEEFQKLSHIKTLQDATQKKIEENGGKLTIIEEAKKSVIQDVIYRQMPLAKKEQQEIKREMEYLNKTLEKRRKEIQNLNS EISQARIYLREFITRYFSDLIAQVSGTSLETFNDFVIREIGDEGINIDTRVQNAFERETQGIFNEISKIETIFNADRSFF EKHAGALGKIGINFLNQSGFINATNIKLARDTIAAAGKFVGIDWALKFKPWGAVKLAGNLNKFLPLIGLAFEMWDSWKES QKIEKLEKAKGEMESNFDGQKQEILDLINDETRFKQTCFPMALELEKCIQECEESVKKTQECAQGLEKWIQTGEDFIKGE DFIEVEPERGMN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66156; Mature: 66156
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNETLEQFKANQKRNQENLKKLLDFIHTGEKYGIQIEESLKDKIRNAIKNVADQKLKVAL CCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHEEEEE VGGFSEGKTSIAAAWIDRLDESMKIDHKESSDAVKIYDIDNEMELVDTPGLFGFKQKEHD EECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCC SGKIEHYKDITKKYVSEAHLILYALNPSNPIKESHKDDLNWLFRTLNLLSRTIFVISRFD CCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC EEADIEDEQDYNKRFKIKKENIQNRLNELISLSEEEKESLIIVAVAANPFDLGVEHWLKH CCCCCCCCCCHHHHHCEEHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHCHHHHHHH QEEFQKLSHIKTLQDATQKKIEENGGKLTIIEEAKKSVIQDVIYRQMPLAKKEQQEIKRE HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHH MEYLNKTLEKRRKEIQNLNSEISQARIYLREFITRYFSDLIAQVSGTSLETFNDFVIREI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH GDEGINIDTRVQNAFERETQGIFNEISKIETIFNADRSFFEKHAGALGKIGINFLNQSGF CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC INATNIKLARDTIAAAGKFVGIDWALKFKPWGAVKLAGNLNKFLPLIGLAFEMWDSWKES EEECCCCHHHHHHHHCCCEEEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH QKIEKLEKAKGEMESNFDGQKQEILDLINDETRFKQTCFPMALELEKCIQECEESVKKTQ HHHHHHHHHHCHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ECAQGLEKWIQTGEDFIKGEDFIEVEPERGMN HHHHHHHHHHHCCHHHHCCCCCEEECCCCCCC >Mature Secondary Structure MNETLEQFKANQKRNQENLKKLLDFIHTGEKYGIQIEESLKDKIRNAIKNVADQKLKVAL CCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHEEEEE VGGFSEGKTSIAAAWIDRLDESMKIDHKESSDAVKIYDIDNEMELVDTPGLFGFKQKEHD EECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCC SGKIEHYKDITKKYVSEAHLILYALNPSNPIKESHKDDLNWLFRTLNLLSRTIFVISRFD CCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC EEADIEDEQDYNKRFKIKKENIQNRLNELISLSEEEKESLIIVAVAANPFDLGVEHWLKH CCCCCCCCCCHHHHHCEEHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHCHHHHHHH QEEFQKLSHIKTLQDATQKKIEENGGKLTIIEEAKKSVIQDVIYRQMPLAKKEQQEIKRE HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHH MEYLNKTLEKRRKEIQNLNSEISQARIYLREFITRYFSDLIAQVSGTSLETFNDFVIREI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH GDEGINIDTRVQNAFERETQGIFNEISKIETIFNADRSFFEKHAGALGKIGINFLNQSGF CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC INATNIKLARDTIAAAGKFVGIDWALKFKPWGAVKLAGNLNKFLPLIGLAFEMWDSWKES EEECCCCHHHHHHHHCCCEEEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH QKIEKLEKAKGEMESNFDGQKQEILDLINDETRFKQTCFPMALELEKCIQECEESVKKTQ HHHHHHHHHHCHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ECAQGLEKWIQTGEDFIKGEDFIEVEPERGMN HHHHHHHHHHHCCHHHHCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA