| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108563123
Identifier: 108563123
GI number: 108563123
Start: 734978
End: 735427
Strand: Direct
Name: 108563123
Synonym: HPAG1_0698
Alternate gene names: NA
Gene position: 734978-735427 (Clockwise)
Preceding gene: 108563122
Following gene: 108563129
Centisome position: 46.04
GC content: 35.78
Gene sequence:
>450_bases TTGCATAGGATTTTAATGAATTTTTTACTCCCTAATAAGGGGGTTTTCAAAACGGCTGATAATACCATTTTAGGAGCTGG TTTTGAAACGATCCCCCATTTTCAAGTGCCTATGGCTATGAAAGAATGGTGCGATAATCTCAATTATAAGATGAAAACCT TACAAGATAAAGAAGAAAAACTAAAAGCCATTTTAGAACAACACATTTTGTTTGAAAGGATACACCCTTTTAGCGATGGT AATGGTAGGGTGGGCAGAATGCTAATCTTTTATAGCGTTTTAGAGCAAAACTTAATACCATTTGTGATCACCAAAGAACA AAAAGAGGTTTACATTAAGGCTTTAGACACGCGCAATACAGAAAGCTTATACCAACTCGCCAAAGTGTCCCAAGAGTTTG AACTCACACACATACAAGGGCAAATGGTATTAAATAAGAATAAGCCCTAA
Upstream 100 bases:
>100_bases AAAGAGCTTTCTTTGAAGTGAAAAACTATCAAAACATGCTCTTCTTTCTATTAGAAAACCTGAATAAAAGACAAAGCGTT GATAGTTTTTTATAAGGGAG
Downstream 100 bases:
>100_bases AATCATGGTTTTCAAGCGCGCATCAAATAGAGCTTTTTCCTTTCGCTTGAAGAAGCGATGTTGAGCAATTGGCGGTATTT GGTGATCGTTCTTCTTACCA
Product: hypothetical protein
Products: NA
Alternate protein names: Fic Family Protein
Number of amino acids: Translated: 149; Mature: 149
Protein sequence:
>149_residues MHRILMNFLLPNKGVFKTADNTILGAGFETIPHFQVPMAMKEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDG NGRVGRMLIFYSVLEQNLIPFVITKEQKEVYIKALDTRNTESLYQLAKVSQEFELTHIQGQMVLNKNKP
Sequences:
>Translated_149_residues MHRILMNFLLPNKGVFKTADNTILGAGFETIPHFQVPMAMKEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDG NGRVGRMLIFYSVLEQNLIPFVITKEQKEVYIKALDTRNTESLYQLAKVSQEFELTHIQGQMVLNKNKP >Mature_149_residues MHRILMNFLLPNKGVFKTADNTILGAGFETIPHFQVPMAMKEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDG NGRVGRMLIFYSVLEQNLIPFVITKEQKEVYIKALDTRNTESLYQLAKVSQEFELTHIQGQMVLNKNKP
Specific function: Unknown
COG id: COG3177
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17411; Mature: 17411
Theoretical pI: Translated: 9.01; Mature: 9.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHRILMNFLLPNKGVFKTADNTILGAGFETIPHFQVPMAMKEWCDNLNYKMKTLQDKEEK CHHHHHHHHCCCCCCEECCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEHHHHCCHHHH LKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKEVYIKALDTRNT HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCH ESLYQLAKVSQEFELTHIQGQMVLNKNKP HHHHHHHHHHHHHEEEEECCEEEECCCCC >Mature Secondary Structure MHRILMNFLLPNKGVFKTADNTILGAGFETIPHFQVPMAMKEWCDNLNYKMKTLQDKEEK CHHHHHHHHCCCCCCEECCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEHHHHCCHHHH LKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKEVYIKALDTRNT HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCH ESLYQLAKVSQEFELTHIQGQMVLNKNKP HHHHHHHHHHHHHEEEEECCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA