| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is omp85 [H]
Identifier: 108563065
GI number: 108563065
Start: 665326
End: 668076
Strand: Direct
Name: omp85 [H]
Synonym: HPAG1_0640
Alternate gene names: 108563065
Gene position: 665326-668076 (Clockwise)
Preceding gene: 108563064
Following gene: 108563066
Centisome position: 41.68
GC content: 42.78
Gene sequence:
>2751_bases ATTAAAAAATTAATTCTATCCTCTCTTGTTTTCGCATGTATCAATACCAGCGTTGAAGCTTTAGAAAATGACGGCTCTAA ACCAAACGATTTGACTCCACCAAAAGAAGCCTCTCAAGAAGCTCAAAGAAATGAGGCTCCAAAAAATGAAGTTCAAAGAA ATGAGGCTCAAAAAGAAACCCCCCAATCCAATCAAACGCCTAAAGAAATGAAAGTCAAGTCCATTTCTTATGTCGGGCTT TCTTACATGTCTGACATGCTCGCTAATGAGATTGTAAAGATTCGTGTGGGCGATATGGTGGATTCTAAAAAAATAGACAC CGCTGTTTTGGCTTTGTTCAATCAAGGGTATTTTAAAGACGTTTATGCCACTTTTGAAGGCGGCATATTAGAGTTTCATT TTGATGAAAAAGCCAGGATTGCCGGGGTAGAAATCAAGGGTTATGGGACTGAAAAGGAAAAAGACGGCTTAAAATCCCAA ATGGGGATCAAAAAGGGCGACACCTTTGATGAGCAAAAATTAGAGCATGCTAAAACGGCTTTAAAAACCGCTTTAGAGGG GCAGGGCTATTATGGGAGCGTGGTGGAGGTGCGCACAGAAAAGGTCAGTGAGGGCGCATTATTAATCGTGTTTGATGTGA ATAGGGGGGATAGCATTTATATCAAACAATCCATTTATGAGGGAAGCGCGAAATTAAAACGCCGCATGATTGAATCTTTG AGCGCGAACAAACAAAGAGATTTCATGGGCTGGATGTGGGGCTTGAATGATGGGAAATTGCGTTTAGATCAATTAGAATA CGATTCTATGCGTATCCAAGATGTGTATATGCGTAGGGGTTACTTAGACGCTCATATTTCTTCGCCTTTTTTGAAAACGG ATTTTTCTACCCATGACGCTAAGCTCCATTATAAAGTCAAAGAGGGGATCCAATACAGGATTTCAGACATTTTAATAGAG ATTGACAACCCGGTAGTCCCCTTAAAAACCTTAGAAAAAGCGCTTAAAGTTAAAAGAAAAGATGTCTTTAATATTGAGCA TTTGAGAGCGGATGCGCAAATTTTAAAAACCGAAATCGCTGATAAGGGTTATGCGTTTGCGGTGGTGAAGCCAGACTTGG ATAAGGACGAAAAAAACGGGCTTGTGAAAGTCATTTATCGTATTGAAGTGGGCGATATGGTGTATATCAATGATGTCATC ATTTCAGGGAACCAACGCACGAGCGATCGAATCATTAGGAGGGAGTTATTGTTAGGGCCTAAGGATAAATACAACTTGAC CAAACTGAGAAATTCCGAAAATTCTTTAAGGCGTTTAGGGTTTTTCTCTAAAGTCAAAATTGAAGAAAAAAGGGTGAATA GCTCGCTTATGGATTTATTAGTGAGCGTAGAAGAGGGGCGCACCGGGCAGTTGCAATTTGGGTTAGGCTATGGCTCTTAT GGAGGGCTTATGCTTAATGGGAGCGTGAGCGAAAGAAACCTTTTTGGCACAGGCCAAAGCATGAGCTTGTATGCTAATAT TGCTACAGGGGGGGGCAGATCTTATCCTGGCATGCCAAGAGGAGCGGGGCGTATGTTTGCCGGGAATTTGAGCTTGACTA ATCCAAGGATTTTTGACAGCTGGTATAGCTCTACGATCAATCTTTATGCGGATTACAGGATAAGCTATCAATACATCCAA CAAGGCGGAGGCTTTGGGGTGAATGTCGGGCGCATGCTGGGTAACAGAACCCATGTGAGCTTAGGGTATAACTTGAACGT TACCAAGCTCCTTGGTTTCAGCAGCCCTTTATACAACCGCTACTATTCCTCTGTTAATGAAGTGGTCTCTCCAAGGCAAT GTTCCACCCCCGCATCGGTGATTATCAATCGCTTATCAGGCGGTAAAACTCCATTGGTCCCTGAAAGCTGTTCTAGTCCT GGAGCGATCACCACTTCACCAGAAATAAAAGGTATTTGGGATAGGGATTACCATACGCCTATCACCAGCTCTTTCACTCT TGATGTGAGCTATGACAACACTGATGATTATTATTTCCCTAGAAATGGGGTTATCTTTAGCTCTTATGCGACGATGTCTG GTTTGCCAAGCTCTGGCACGCTCAATTCTTGGAACGGGTTAGGCGGGAATGTCCGTAACACTAAAGTTTATGGTAAATTC GCCGCTTACCACCATTTGCAAAAATATTTATTGATAGATTTGATCGCTCGCTTTAAAACGCAAGGGGGCTATATCTTTAG GTATAACACCGATGATTACTTGCCCTTAAACTCCACTTTCTACATGGGGGGCGTAACCACGGTGAGAGGCTTTAGGAACG GATCGGTTACGCCTAAAGATGAGTTTGGCTTGTGGCTTGGAGGCGATGGGATTTTTACCGCTTCTACTGAATTGAGCTAT GGGGTGCTAAAAGCGGCTAAAATGCGTTTAGCGTGGTTTTTTGACTTTGGTTTCTTAACCTTTAAAACCCCAACTAGGGG GAGTTTCTTCTATAACGCTCCCGTTACGACGGCGAATTTTAAAGATTATGGCGTTATAGGGTCTGGGTTTGAAAGAGCGA CTTGGAGAGCTTCTACAGGCTTGCAGATTGAATGGATTTCGCCCATGGGGCCTTTGGTGTTGATTTTCCCTATAGCGTTT TTCAACCAATGGGGCGATGGCAATGGCAAGAAATGCAAAGGGCTATGCTTCAACCCTAACATGGACGATTACACGCAACA CTTTGAATTTTCTATGGGAACAAGGTTTTAA
Upstream 100 bases:
>100_bases TTTATACAGAAATTTTAATAATTTTTAGCGTTTTTAAGAATGATTAGTTATAATAACGCTACTAACAACACTCAAGCTAA AATCTATTAAGGAAATCAGT
Downstream 100 bases:
>100_bases AATGTGCATTAACAGAGAAGAAATTTTGGATTTAATGAAAAACGCGCCCTTGAAAGAATTAGGGCAAAAGGCTTTGAGAG TGAAGCAACGCTTGCACCCT
Product: protective surface antigen D15
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 916; Mature: 916
Protein sequence:
>916_residues MKKLILSSLVFACINTSVEALENDGSKPNDLTPPKEASQEAQRNEAPKNEVQRNEAQKETPQSNQTPKEMKVKSISYVGL SYMSDMLANEIVKIRVGDMVDSKKIDTAVLALFNQGYFKDVYATFEGGILEFHFDEKARIAGVEIKGYGTEKEKDGLKSQ MGIKKGDTFDEQKLEHAKTALKTALEGQGYYGSVVEVRTEKVSEGALLIVFDVNRGDSIYIKQSIYEGSAKLKRRMIESL SANKQRDFMGWMWGLNDGKLRLDQLEYDSMRIQDVYMRRGYLDAHISSPFLKTDFSTHDAKLHYKVKEGIQYRISDILIE IDNPVVPLKTLEKALKVKRKDVFNIEHLRADAQILKTEIADKGYAFAVVKPDLDKDEKNGLVKVIYRIEVGDMVYINDVI ISGNQRTSDRIIRRELLLGPKDKYNLTKLRNSENSLRRLGFFSKVKIEEKRVNSSLMDLLVSVEEGRTGQLQFGLGYGSY GGLMLNGSVSERNLFGTGQSMSLYANIATGGGRSYPGMPRGAGRMFAGNLSLTNPRIFDSWYSSTINLYADYRISYQYIQ QGGGFGVNVGRMLGNRTHVSLGYNLNVTKLLGFSSPLYNRYYSSVNEVVSPRQCSTPASVIINRLSGGKTPLVPESCSSP GAITTSPEIKGIWDRDYHTPITSSFTLDVSYDNTDDYYFPRNGVIFSSYATMSGLPSSGTLNSWNGLGGNVRNTKVYGKF AAYHHLQKYLLIDLIARFKTQGGYIFRYNTDDYLPLNSTFYMGGVTTVRGFRNGSVTPKDEFGLWLGGDGIFTASTELSY GVLKAAKMRLAWFFDFGFLTFKTPTRGSFFYNAPVTTANFKDYGVIGSGFERATWRASTGLQIEWISPMGPLVLIFPIAF FNQWGDGNGKKCKGLCFNPNMDDYTQHFEFSMGTRF
Sequences:
>Translated_916_residues MKKLILSSLVFACINTSVEALENDGSKPNDLTPPKEASQEAQRNEAPKNEVQRNEAQKETPQSNQTPKEMKVKSISYVGL SYMSDMLANEIVKIRVGDMVDSKKIDTAVLALFNQGYFKDVYATFEGGILEFHFDEKARIAGVEIKGYGTEKEKDGLKSQ MGIKKGDTFDEQKLEHAKTALKTALEGQGYYGSVVEVRTEKVSEGALLIVFDVNRGDSIYIKQSIYEGSAKLKRRMIESL SANKQRDFMGWMWGLNDGKLRLDQLEYDSMRIQDVYMRRGYLDAHISSPFLKTDFSTHDAKLHYKVKEGIQYRISDILIE IDNPVVPLKTLEKALKVKRKDVFNIEHLRADAQILKTEIADKGYAFAVVKPDLDKDEKNGLVKVIYRIEVGDMVYINDVI ISGNQRTSDRIIRRELLLGPKDKYNLTKLRNSENSLRRLGFFSKVKIEEKRVNSSLMDLLVSVEEGRTGQLQFGLGYGSY GGLMLNGSVSERNLFGTGQSMSLYANIATGGGRSYPGMPRGAGRMFAGNLSLTNPRIFDSWYSSTINLYADYRISYQYIQ QGGGFGVNVGRMLGNRTHVSLGYNLNVTKLLGFSSPLYNRYYSSVNEVVSPRQCSTPASVIINRLSGGKTPLVPESCSSP GAITTSPEIKGIWDRDYHTPITSSFTLDVSYDNTDDYYFPRNGVIFSSYATMSGLPSSGTLNSWNGLGGNVRNTKVYGKF AAYHHLQKYLLIDLIARFKTQGGYIFRYNTDDYLPLNSTFYMGGVTTVRGFRNGSVTPKDEFGLWLGGDGIFTASTELSY GVLKAAKMRLAWFFDFGFLTFKTPTRGSFFYNAPVTTANFKDYGVIGSGFERATWRASTGLQIEWISPMGPLVLIFPIAF FNQWGDGNGKKCKGLCFNPNMDDYTQHFEFSMGTRF >Mature_916_residues MKKLILSSLVFACINTSVEALENDGSKPNDLTPPKEASQEAQRNEAPKNEVQRNEAQKETPQSNQTPKEMKVKSISYVGL SYMSDMLANEIVKIRVGDMVDSKKIDTAVLALFNQGYFKDVYATFEGGILEFHFDEKARIAGVEIKGYGTEKEKDGLKSQ MGIKKGDTFDEQKLEHAKTALKTALEGQGYYGSVVEVRTEKVSEGALLIVFDVNRGDSIYIKQSIYEGSAKLKRRMIESL SANKQRDFMGWMWGLNDGKLRLDQLEYDSMRIQDVYMRRGYLDAHISSPFLKTDFSTHDAKLHYKVKEGIQYRISDILIE IDNPVVPLKTLEKALKVKRKDVFNIEHLRADAQILKTEIADKGYAFAVVKPDLDKDEKNGLVKVIYRIEVGDMVYINDVI ISGNQRTSDRIIRRELLLGPKDKYNLTKLRNSENSLRRLGFFSKVKIEEKRVNSSLMDLLVSVEEGRTGQLQFGLGYGSY GGLMLNGSVSERNLFGTGQSMSLYANIATGGGRSYPGMPRGAGRMFAGNLSLTNPRIFDSWYSSTINLYADYRISYQYIQ QGGGFGVNVGRMLGNRTHVSLGYNLNVTKLLGFSSPLYNRYYSSVNEVVSPRQCSTPASVIINRLSGGKTPLVPESCSSP GAITTSPEIKGIWDRDYHTPITSSFTLDVSYDNTDDYYFPRNGVIFSSYATMSGLPSSGTLNSWNGLGGNVRNTKVYGKF AAYHHLQKYLLIDLIARFKTQGGYIFRYNTDDYLPLNSTFYMGGVTTVRGFRNGSVTPKDEFGLWLGGDGIFTASTELSY GVLKAAKMRLAWFFDFGFLTFKTPTRGSFFYNAPVTTANFKDYGVIGSGFERATWRASTGLQIEWISPMGPLVLIFPIAF FNQWGDGNGKKCKGLCFNPNMDDYTQHFEFSMGTRF
Specific function: Unknown
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Escherichia coli, GI1786374, Length=437, Percent_Identity=24.0274599542334, Blast_Score=123, Evalue=5e-29,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 102700; Mature: 102700
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLILSSLVFACINTSVEALENDGSKPNDLTPPKEASQEAQRNEAPKNEVQRNEAQKET CHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCC PQSNQTPKEMKVKSISYVGLSYMSDMLANEIVKIRVGDMVDSKKIDTAVLALFNQGYFKD CCCCCCHHHHEEHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHCCCHHHH VYATFEGGILEFHFDEKARIAGVEIKGYGTEKEKDGLKSQMGIKKGDTFDEQKLEHAKTA HHHHHCCCEEEEEECCCCEEEEEEEECCCCCHHHHCHHHHCCCCCCCCCHHHHHHHHHHH LKTALEGQGYYGSVVEVRTEKVSEGALLIVFDVNRGDSIYIKQSIYEGSAKLKRRMIESL HHHHHCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECHHCCHHHHHHHHHHHH SANKQRDFMGWMWGLNDGKLRLDQLEYDSMRIQDVYMRRGYLDAHISSPFLKTDFSTHDA CCCCCCCHHHEEECCCCCCEEEEEECCCCCHHHHHHHHCCCEEECCCCCEEECCCCCCCE KLHYKVKEGIQYRISDILIEIDNPVVPLKTLEKALKVKRKDVFNIEHLRADAQILKTEIA EEEEEECCCHHEEEEEEEEECCCCEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC DKGYAFAVVKPDLDKDEKNGLVKVIYRIEVGDMVYINDVIISGNQRTSDRIIRRELLLGP CCCEEEEEECCCCCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCHHHHHHHHHHHCCC KDKYNLTKLRNSENSLRRLGFFSKVKIEEKRVNSSLMDLLVSVEEGRTGQLQFGLGYGSY CCCCCHHHHCCCHHHHHHHCCHHHEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC GGLMLNGSVSERNLFGTGQSMSLYANIATGGGRSYPGMPRGAGRMFAGNLSLTNPRIFDS CCEEEECCCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCEECCCCCHHHH WYSSTINLYADYRISYQYIQQGGGFGVNVGRMLGNRTHVSLGYNLNVTKLLGFSSPLYNR HHCCEEEEEEEEEEEEEHHHCCCCCCEEHHHHHCCCEEEEEECCCCHHHEECCCCHHHHH YYSSVNEVVSPRQCSTPASVIINRLSGGKTPLVPESCSSPGAITTSPEIKGIWDRDYHTP HHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCEECCCCCCCC ITSSFTLDVSYDNTDDYYFPRNGVIFSSYATMSGLPSSGTLNSWNGLGGNVRNTKVYGKF CCCEEEEEEEECCCCCEEECCCCEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCEEEHHH AAYHHLQKYLLIDLIARFKTQGGYIFRYNTDDYLPLNSTFYMGGVTTVRGFRNGSVTPKD HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCCCEEEECCEEEEEECCCCCCCCCH EFGLWLGGDGIFTASTELSYGVLKAAKMRLAWFFDFGFLTFKTPTRGSFFYNAPVTTANF HCCEEECCCEEEEECCCCHHHHHHHHHHEEEEEEECCEEEEECCCCCCEEEECCEEECCC KDYGVIGSGFERATWRASTGLQIEWISPMGPLVLIFPIAFFNQWGDGNGKKCKGLCFNPN CCCCCCCCCCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCC MDDYTQHFEFSMGTRF CCHHHHHHEEECCCCC >Mature Secondary Structure MKKLILSSLVFACINTSVEALENDGSKPNDLTPPKEASQEAQRNEAPKNEVQRNEAQKET CHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCC PQSNQTPKEMKVKSISYVGLSYMSDMLANEIVKIRVGDMVDSKKIDTAVLALFNQGYFKD CCCCCCHHHHEEHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHCCCHHHH VYATFEGGILEFHFDEKARIAGVEIKGYGTEKEKDGLKSQMGIKKGDTFDEQKLEHAKTA HHHHHCCCEEEEEECCCCEEEEEEEECCCCCHHHHCHHHHCCCCCCCCCHHHHHHHHHHH LKTALEGQGYYGSVVEVRTEKVSEGALLIVFDVNRGDSIYIKQSIYEGSAKLKRRMIESL HHHHHCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECHHCCHHHHHHHHHHHH SANKQRDFMGWMWGLNDGKLRLDQLEYDSMRIQDVYMRRGYLDAHISSPFLKTDFSTHDA CCCCCCCHHHEEECCCCCCEEEEEECCCCCHHHHHHHHCCCEEECCCCCEEECCCCCCCE KLHYKVKEGIQYRISDILIEIDNPVVPLKTLEKALKVKRKDVFNIEHLRADAQILKTEIA EEEEEECCCHHEEEEEEEEECCCCEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC DKGYAFAVVKPDLDKDEKNGLVKVIYRIEVGDMVYINDVIISGNQRTSDRIIRRELLLGP CCCEEEEEECCCCCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCHHHHHHHHHHHCCC KDKYNLTKLRNSENSLRRLGFFSKVKIEEKRVNSSLMDLLVSVEEGRTGQLQFGLGYGSY CCCCCHHHHCCCHHHHHHHCCHHHEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC GGLMLNGSVSERNLFGTGQSMSLYANIATGGGRSYPGMPRGAGRMFAGNLSLTNPRIFDS CCEEEECCCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCEECCCCCHHHH WYSSTINLYADYRISYQYIQQGGGFGVNVGRMLGNRTHVSLGYNLNVTKLLGFSSPLYNR HHCCEEEEEEEEEEEEEHHHCCCCCCEEHHHHHCCCEEEEEECCCCHHHEECCCCHHHHH YYSSVNEVVSPRQCSTPASVIINRLSGGKTPLVPESCSSPGAITTSPEIKGIWDRDYHTP HHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCEECCCCCCCC ITSSFTLDVSYDNTDDYYFPRNGVIFSSYATMSGLPSSGTLNSWNGLGGNVRNTKVYGKF CCCEEEEEEEECCCCCEEECCCCEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCEEEHHH AAYHHLQKYLLIDLIARFKTQGGYIFRYNTDDYLPLNSTFYMGGVTTVRGFRNGSVTPKD HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCCCEEEECCEEEEEECCCCCCCCCH EFGLWLGGDGIFTASTELSYGVLKAAKMRLAWFFDFGFLTFKTPTRGSFFYNAPVTTANF HCCEEECCCEEEEECCCCHHHHHHHHHHEEEEEEECCEEEEECCCCCCEEEECCEEECCC KDYGVIGSGFERATWRASTGLQIEWISPMGPLVLIFPIAFFNQWGDGNGKKCKGLCFNPN CCCCCCCCCCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCC MDDYTQHFEFSMGTRF CCHHHHHHEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]