| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is yceG [C]
Identifier: 108562991
GI number: 108562991
Start: 584767
End: 585756
Strand: Direct
Name: yceG [C]
Synonym: HPAG1_0566
Alternate gene names: 108562991
Gene position: 584767-585756 (Clockwise)
Preceding gene: 108562971
Following gene: 108562993
Centisome position: 36.63
GC content: 37.88
Gene sequence:
>990_bases ATGACAACTAAAAGAGTGAATACTGCCACAAACAAGATAATGACATTAAATACTTTCTTGGATACATGTTTTCTTTTGTT CATTAGTATTCTTTTTTACTTAAGTATACCAATTTATCCTAACAAAGTGGTGGTTGTCCCGCAAGGTTCGCTCAAAAAAG TGTTTTTTTCTTTAAAAGAGCAAGGCGTGGATATGAACGCTTTGGATTTGCTTTTTTTACGCCTGATGGGCATGCCTAAA AAAGGTTATATTGATATGGGCGATGGGGCTTTAAGAAAGGGGGATTTTTTAGTCCGTTTGATTAAAGCAAAAGCGGCGCA AAAAAGCGCGACTCTAATCCCTGGAGAAAGCCGTTATTTTTTCATGCAAATTTTGAGCGAGACTTACCAACTAGAAACAA GCGATCTCAATCAGGCTTATGAAAGCATCGCTCCACGATTGAACGGCGCTGTGATAGAAGATGGGGTGATATGGCCAGAC ACTTATCATTTGCCTTTAGGGGAGGACGCTTTTAAAATCATGCAAACTTTGATTGGTCAATCCATGAAAAAACACGAAGC TTTAAGCAAACAATGGCTTGGATACTACCATAAAGAAGAGTGGTTTGAAAAAATCATTCTCGCTTCTATTGTGCAAAAAG AAGCCGCTAATACTGAAGAAATGCCCTTGATTGCGAGCGTGATTTTTAACCGCTTGAGAAAAGGCATGCCTTTGCAAATG GATGGGGCTTTGAATTATCAGGAATTTTCACACGCTAAAGTAACCAAAGAGCGCATTAAAACCGATAACACCCCCTATAA CACCTATAAATTTAAGGGCTTGCCTAAAAATCCTGTAGGGAGCGTGAGCCTAGAAGCGATTAGAGCCGTGGTTTTCCCTA AAAAAACGGATTTCTTGTATTTTGTGAAAATGCCGGATAAAAAACATGCTTTCAGTGCGACTTATAAAAAGCATTTAAAA AACATTAATCTTTCTAATAATCATTTTTAA
Upstream 100 bases:
>100_bases TAAAGAAAGCTTGTTGTTAAGTTTTAAGTATAATTCAGAAATGCCAAGCTTCCCGATTTTTAAATTTTGTATGTGAATGC CGTTTGAAAGGGTTTTGTGA
Downstream 100 bases:
>100_bases GATTAAGGTAAATGGGGCGTTTTTTCTTTTAAATTGGGTAAAAAGTGTTTAGTATTTTCTCATTTTAATTTTAAGTTCTT ACTATTAAAGCATTTTAGAT
Product: aminodeoxychorismate lyase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MTTKRVNTATNKIMTLNTFLDTCFLLFISILFYLSIPIYPNKVVVVPQGSLKKVFFSLKEQGVDMNALDLLFLRLMGMPK KGYIDMGDGALRKGDFLVRLIKAKAAQKSATLIPGESRYFFMQILSETYQLETSDLNQAYESIAPRLNGAVIEDGVIWPD TYHLPLGEDAFKIMQTLIGQSMKKHEALSKQWLGYYHKEEWFEKIILASIVQKEAANTEEMPLIASVIFNRLRKGMPLQM DGALNYQEFSHAKVTKERIKTDNTPYNTYKFKGLPKNPVGSVSLEAIRAVVFPKKTDFLYFVKMPDKKHAFSATYKKHLK NINLSNNHF
Sequences:
>Translated_329_residues MTTKRVNTATNKIMTLNTFLDTCFLLFISILFYLSIPIYPNKVVVVPQGSLKKVFFSLKEQGVDMNALDLLFLRLMGMPK KGYIDMGDGALRKGDFLVRLIKAKAAQKSATLIPGESRYFFMQILSETYQLETSDLNQAYESIAPRLNGAVIEDGVIWPD TYHLPLGEDAFKIMQTLIGQSMKKHEALSKQWLGYYHKEEWFEKIILASIVQKEAANTEEMPLIASVIFNRLRKGMPLQM DGALNYQEFSHAKVTKERIKTDNTPYNTYKFKGLPKNPVGSVSLEAIRAVVFPKKTDFLYFVKMPDKKHAFSATYKKHLK NINLSNNHF >Mature_328_residues TTKRVNTATNKIMTLNTFLDTCFLLFISILFYLSIPIYPNKVVVVPQGSLKKVFFSLKEQGVDMNALDLLFLRLMGMPKK GYIDMGDGALRKGDFLVRLIKAKAAQKSATLIPGESRYFFMQILSETYQLETSDLNQAYESIAPRLNGAVIEDGVIWPDT YHLPLGEDAFKIMQTLIGQSMKKHEALSKQWLGYYHKEEWFEKIILASIVQKEAANTEEMPLIASVIFNRLRKGMPLQMD GALNYQEFSHAKVTKERIKTDNTPYNTYKFKGLPKNPVGSVSLEAIRAVVFPKKTDFLYFVKMPDKKHAFSATYKKHLKN INLSNNHF
Specific function: Unknown
COG id: COG1559
COG function: function code R; Predicted periplasmic solute-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0755 family [H]
Homologues:
Organism=Escherichia coli, GI1787339, Length=237, Percent_Identity=28.6919831223629, Blast_Score=84, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003770 [H]
Pfam domain/function: PF02618 ADC_lyase [H]
EC number: NA
Molecular weight: Translated: 37604; Mature: 37472
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTKRVNTATNKIMTLNTFLDTCFLLFISILFYLSIPIYPNKVVVVPQGSLKKVFFSLKE CCCCCCCHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH QGVDMNALDLLFLRLMGMPKKGYIDMGDGALRKGDFLVRLIKAKAAQKSATLIPGESRYF CCCCCHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCHHH FMQILSETYQLETSDLNQAYESIAPRLNGAVIEDGVIWPDTYHLPLGEDAFKIMQTLIGQ HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEECCEECCCCCCCCCCHHHHHHHHHHHHH SMKKHEALSKQWLGYYHKEEWFEKIILASIVQKEAANTEEMPLIASVIFNRLRKGMPLQM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEE DGALNYQEFSHAKVTKERIKTDNTPYNTYKFKGLPKNPVGSVSLEAIRAVVFPKKTDFLY CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEE FVKMPDKKHAFSATYKKHLKNINLSNNHF EEECCCCHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TTKRVNTATNKIMTLNTFLDTCFLLFISILFYLSIPIYPNKVVVVPQGSLKKVFFSLKE CCCCCCHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH QGVDMNALDLLFLRLMGMPKKGYIDMGDGALRKGDFLVRLIKAKAAQKSATLIPGESRYF CCCCCHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCHHH FMQILSETYQLETSDLNQAYESIAPRLNGAVIEDGVIWPDTYHLPLGEDAFKIMQTLIGQ HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEECCEECCCCCCCCCCHHHHHHHHHHHHH SMKKHEALSKQWLGYYHKEEWFEKIILASIVQKEAANTEEMPLIASVIFNRLRKGMPLQM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEE DGALNYQEFSHAKVTKERIKTDNTPYNTYKFKGLPKNPVGSVSLEAIRAVVFPKKTDFLY CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEE FVKMPDKKHAFSATYKKHLKNINLSNNHF EEECCCCHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]