| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is dnaJ2 [H]
Identifier: 108562848
GI number: 108562848
Start: 430872
End: 431738
Strand: Reverse
Name: dnaJ2 [H]
Synonym: HPAG1_0423
Alternate gene names: 108562848
Gene position: 431738-430872 (Counterclockwise)
Preceding gene: 108562850
Following gene: 108562847
Centisome position: 27.05
GC content: 39.45
Gene sequence:
>867_bases ATGAGCAAGAGTTTATACCAAACTTTAAATGTGAGCGAAAACGCCAGCCAAGATGAAATCAAAAAATCCTACCGCCGTTT AGCCAGACAATACCACCCGGATTTGAATAAAACCAAAGAAGCCGAAGAAAAATTCAAAGAAATCAACGCCGCTTATGAAA TTTTAAGCGACGAAGAAAAACGCCGCCAATACGATCAGTTTGGCGATAACATGTTTGGCGGGCAGAATTTCAGCGATTTT GCAAAAAGCCGTGGCGCTAGTGAAGATTTAGACGATATTTTAAGCTCTATTTTTGGGAAAGGAGGCTTTTCGCAAAGATT TTCTCAAAACTCGCAAGGCTTTTCTGGCTTTAATTTTTCCAATTTCGCCCCTGAAAATTTAGACATGACCGCCACTTTAA ATGTCTCTGTTTTAGACACCCTTTTAGGCAATAAAAAACAAGTGAGCATCAATAATGAGACTTTTAGCCTTAAAATCCCT ATCGGCGTGGAAGAGGGCGAAAAAATCAGGGTTCGCAACAAGGGGAAAATGGGGCGAACGACTAGGGGCGATTTGCTCTT AGAGATCCATATTGAAGAAGATGAAATTTATAGGCGCGAGAAAGACGATATTATCCAAATCTTTGATTTACCCTTAAAAA CGGCTCTTTTTGGAGGGAAAATTGAAATCGCTACTTGGCATAAAACCTTAACCCTAACCATTCCCCCTAACACCAAAGCG ATGCAAAAATTCCGCATTAAAGAAAAAGGGATCAAAAACAGAAAAACTTCGCATGTGGGGGATTTGTATTTGCAAGCTCG TTTGATCTTGCCTAAAACGGAGACGCTTTCTAATGAGTTAAAAGCGTTATTAGAAAAAGAATTGTAA
Upstream 100 bases:
>100_bases TTTAAAATCTCCATCACCTAAAAGCATTATCAATAAACTTGATTGACTAACACTAAAGATTTATGATAGTATTCTAATAA AACTATTTTAAAGGTGATTC
Downstream 100 bases:
>100_bases GGAGGAATCGTGTGCGATTATGATGAACCGCTTTATTTGATCAGCGTCGTGGCTAAAATCTTAGGCGTGCACCCTCAAAC CTTGCGCCAATACGAAAAAG
Product: co-chaperone-curved DNA binding protein A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MSKSLYQTLNVSENASQDEIKKSYRRLARQYHPDLNKTKEAEEKFKEINAAYEILSDEEKRRQYDQFGDNMFGGQNFSDF AKSRGASEDLDDILSSIFGKGGFSQRFSQNSQGFSGFNFSNFAPENLDMTATLNVSVLDTLLGNKKQVSINNETFSLKIP IGVEEGEKIRVRNKGKMGRTTRGDLLLEIHIEEDEIYRREKDDIIQIFDLPLKTALFGGKIEIATWHKTLTLTIPPNTKA MQKFRIKEKGIKNRKTSHVGDLYLQARLILPKTETLSNELKALLEKEL
Sequences:
>Translated_288_residues MSKSLYQTLNVSENASQDEIKKSYRRLARQYHPDLNKTKEAEEKFKEINAAYEILSDEEKRRQYDQFGDNMFGGQNFSDF AKSRGASEDLDDILSSIFGKGGFSQRFSQNSQGFSGFNFSNFAPENLDMTATLNVSVLDTLLGNKKQVSINNETFSLKIP IGVEEGEKIRVRNKGKMGRTTRGDLLLEIHIEEDEIYRREKDDIIQIFDLPLKTALFGGKIEIATWHKTLTLTIPPNTKA MQKFRIKEKGIKNRKTSHVGDLYLQARLILPKTETLSNELKALLEKEL >Mature_287_residues SKSLYQTLNVSENASQDEIKKSYRRLARQYHPDLNKTKEAEEKFKEINAAYEILSDEEKRRQYDQFGDNMFGGQNFSDFA KSRGASEDLDDILSSIFGKGGFSQRFSQNSQGFSGFNFSNFAPENLDMTATLNVSVLDTLLGNKKQVSINNETFSLKIPI GVEEGEKIRVRNKGKMGRTTRGDLLLEIHIEEDEIYRREKDDIIQIFDLPLKTALFGGKIEIATWHKTLTLTIPPNTKAM QKFRIKEKGIKNRKTSHVGDLYLQARLILPKTETLSNELKALLEKEL
Specific function: Does not influence ATP binding or hydrolysis nor ADP release. Exerts influence on the interaction of dnaK with substrates; in the presence of dafA, dnaJ inhibits substrate binding, and substrate already bound to dnaK is displaced by dnaJ and dafA [H]
COG id: COG2214
COG function: function code O; DnaJ-class molecular chaperone
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI205360838, Length=330, Percent_Identity=28.4848484848485, Blast_Score=127, Evalue=1e-29, Organism=Homo sapiens, GI205360840, Length=330, Percent_Identity=28.4848484848485, Blast_Score=127, Evalue=1e-29, Organism=Homo sapiens, GI6631085, Length=336, Percent_Identity=27.3809523809524, Blast_Score=107, Evalue=9e-24, Organism=Homo sapiens, GI5453690, Length=340, Percent_Identity=27.6470588235294, Blast_Score=105, Evalue=4e-23, Organism=Homo sapiens, GI56549115, Length=359, Percent_Identity=25.9052924791086, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI201862587, Length=359, Percent_Identity=25.9052924791086, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI201862518, Length=359, Percent_Identity=25.9052924791086, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI194306642, Length=106, Percent_Identity=44.3396226415094, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI194306640, Length=106, Percent_Identity=44.3396226415094, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI56687498, Length=71, Percent_Identity=57.7464788732394, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI72534740, Length=121, Percent_Identity=37.1900826446281, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI9558755, Length=71, Percent_Identity=50.7042253521127, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI39204547, Length=317, Percent_Identity=23.3438485804416, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI45504382, Length=108, Percent_Identity=41.6666666666667, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI7706495, Length=69, Percent_Identity=50.7246376811594, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI5031741, Length=93, Percent_Identity=44.0860215053763, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI88501736, Length=67, Percent_Identity=53.7313432835821, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI27151736, Length=67, Percent_Identity=53.7313432835821, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI4504511, Length=103, Percent_Identity=42.7184466019417, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI47777312, Length=101, Percent_Identity=39.6039603960396, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI194328760, Length=170, Percent_Identity=31.1764705882353, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI194328758, Length=170, Percent_Identity=31.1764705882353, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI21553335, Length=112, Percent_Identity=38.3928571428571, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI29126218, Length=79, Percent_Identity=45.5696202531646, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI22749377, Length=68, Percent_Identity=44.1176470588235, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI17388799, Length=64, Percent_Identity=50, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI4885495, Length=64, Percent_Identity=50, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI23503241, Length=65, Percent_Identity=50.7692307692308, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI68077168, Length=74, Percent_Identity=44.5945945945946, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI68077166, Length=74, Percent_Identity=44.5945945945946, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1787235, Length=288, Percent_Identity=32.6388888888889, Blast_Score=152, Evalue=3e-38, Organism=Escherichia coli, GI1786197, Length=344, Percent_Identity=27.906976744186, Blast_Score=122, Evalue=3e-29, Organism=Caenorhabditis elegans, GI17553098, Length=335, Percent_Identity=27.1641791044776, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17534355, Length=324, Percent_Identity=29.320987654321, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17553096, Length=348, Percent_Identity=26.7241379310345, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17563890, Length=65, Percent_Identity=58.4615384615385, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI212645553, Length=70, Percent_Identity=47.1428571428571, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17538236, Length=67, Percent_Identity=47.7611940298507, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17568643, Length=67, Percent_Identity=52.2388059701493, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17554644, Length=65, Percent_Identity=52.3076923076923, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17507263, Length=61, Percent_Identity=50.8196721311475, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI115532476, Length=63, Percent_Identity=47.6190476190476, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17554900, Length=62, Percent_Identity=48.3870967741936, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324265, Length=102, Percent_Identity=49.0196078431373, Blast_Score=88, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6324252, Length=66, Percent_Identity=56.0606060606061, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6323870, Length=68, Percent_Identity=45.5882352941176, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6323119, Length=70, Percent_Identity=50, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323813, Length=64, Percent_Identity=51.5625, Blast_Score=69, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6324321, Length=64, Percent_Identity=53.125, Blast_Score=68, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6321094, Length=64, Percent_Identity=56.25, Blast_Score=62, Evalue=9e-11, Organism=Drosophila melanogaster, GI24658562, Length=335, Percent_Identity=28.3582089552239, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24658555, Length=335, Percent_Identity=28.3582089552239, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI85726398, Length=358, Percent_Identity=27.9329608938547, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI19920464, Length=327, Percent_Identity=25.9938837920489, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI45549272, Length=69, Percent_Identity=52.1739130434783, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI45552813, Length=69, Percent_Identity=52.1739130434783, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI45552811, Length=69, Percent_Identity=52.1739130434783, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24668492, Length=69, Percent_Identity=50.7246376811594, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI20129487, Length=78, Percent_Identity=51.2820512820513, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24584014, Length=78, Percent_Identity=51.2820512820513, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24654066, Length=92, Percent_Identity=44.5652173913043, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24654070, Length=92, Percent_Identity=44.5652173913043, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24654068, Length=92, Percent_Identity=44.5652173913043, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24654072, Length=92, Percent_Identity=44.5652173913043, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24646562, Length=77, Percent_Identity=49.3506493506493, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24646560, Length=77, Percent_Identity=49.3506493506493, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24646558, Length=77, Percent_Identity=49.3506493506493, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24646556, Length=77, Percent_Identity=49.3506493506493, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21357547, Length=77, Percent_Identity=49.3506493506493, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI17737735, Length=66, Percent_Identity=51.5151515151515, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI28574723, Length=66, Percent_Identity=51.5151515151515, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24668523, Length=66, Percent_Identity=51.5151515151515, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI21358273, Length=224, Percent_Identity=29.9107142857143, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI18858081, Length=69, Percent_Identity=46.3768115942029, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI18859921, Length=71, Percent_Identity=49.2957746478873, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI161077138, Length=62, Percent_Identity=50, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641698, Length=65, Percent_Identity=43.0769230769231, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641696, Length=65, Percent_Identity=43.0769230769231, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]
EC number: NA
Molecular weight: Translated: 32927; Mature: 32796
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKSLYQTLNVSENASQDEIKKSYRRLARQYHPDLNKTKEAEEKFKEINAAYEILSDEEK CCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHH RRQYDQFGDNMFGGQNFSDFAKSRGASEDLDDILSSIFGKGGFSQRFSQNSQGFSGFNFS HHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCC NFAPENLDMTATLNVSVLDTLLGNKKQVSINNETFSLKIPIGVEEGEKIRVRNKGKMGRT CCCCCCCCEEEEECHHHHHHHHCCCEEEEECCCEEEEEEEEECCCCCEEEEECCCCCCCC TRGDLLLEIHIEEDEIYRREKDDIIQIFDLPLKTALFGGKIEIATWHKTLTLTIPPNTKA CCCCEEEEEEECHHHHHHCCCCCEEEHHCCCHHHHHCCCEEEEEEEEEEEEEEECCCHHH MQKFRIKEKGIKNRKTSHVGDLYLQARLILPKTETLSNELKALLEKEL HHHHHHHHHCCCCCCCHHHHHEEEEEEEECCCHHHHHHHHHHHHHHCC >Mature Secondary Structure SKSLYQTLNVSENASQDEIKKSYRRLARQYHPDLNKTKEAEEKFKEINAAYEILSDEEK CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHH RRQYDQFGDNMFGGQNFSDFAKSRGASEDLDDILSSIFGKGGFSQRFSQNSQGFSGFNFS HHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCC NFAPENLDMTATLNVSVLDTLLGNKKQVSINNETFSLKIPIGVEEGEKIRVRNKGKMGRT CCCCCCCCEEEEECHHHHHHHHCCCEEEEECCCEEEEEEEEECCCCCEEEEECCCCCCCC TRGDLLLEIHIEEDEIYRREKDDIIQIFDLPLKTALFGGKIEIATWHKTLTLTIPPNTKA CCCCEEEEEEECHHHHHHCCCCCEEEHHCCCHHHHHCCCEEEEEEEEEEEEEEECCCHHH MQKFRIKEKGIKNRKTSHVGDLYLQARLILPKTETLSNELKALLEKEL HHHHHHHHHCCCCCCCHHHHHEEEEEEEECCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9349721; 9276481; 10092456 [H]