| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
Click here to switch to the map view.
The map label for this gene is flgL [H]
Identifier: 108562722
GI number: 108562722
Start: 309635
End: 312121
Strand: Reverse
Name: flgL [H]
Synonym: HPAG1_0297
Alternate gene names: 108562722
Gene position: 312121-309635 (Counterclockwise)
Preceding gene: 108562738
Following gene: 108562708
Centisome position: 19.55
GC content: 39.61
Gene sequence:
>2487_bases ATGCGCGTTACCTTTGGCTCAAAATACAACCAAATGAATAACTACCAAAACGCTTTACAAAATAAAATCAACGACGCTAA CACGCAGATCGCTTCAGGGCTAAAAATCCGTTATGGTTATCAAAACAGCGACATTAACAACCAGAATTTAAAATTCCAAT ACGAAGAAAACACCTTAGATCAAGGAATTGATGTGGCCAAAAACGCTTACACTTCAACGCTCAATACCGACAAAGCCTTG CAAGAATTTTCTAAAACGATGGAGGCGTTTAAAACCAAACTCATCCAATCCGCTAACGATGTGCATTCAGAAACTTCTCG CGCCGCTATCGCTAACGATTTAGAACGCTTGAGGGAGCATATGATGAATGTTGCTAACACCTCTATAGGGGGGGAATTTT TATTTGGGGGCAGTAAGGTGGATAGACCTCCCATTGATAGTAATGGGAAATACCATGGCAATGGCGAAGATTTAAACGCG CTTATTAGCTCTGATAACCTTGTGCCTTATAATATCAGCGGGCAAGATTTGTTTTTAGGCGCAGATAAAGACAAACACAA GCTCATCACCACCAACATTAAATTATTCAATCAAAACAAGCTCCACCCTGATGTGATGGACGCTTTAGAGCATTCTTCAT TGCCTGAGGAAGTTTTTATTAAACCTAGTGATACCTTGCGAGAACTCATCGGCGATAACGACAAAGACCCCACCAACGAC CCTAAAGAATTTTTTTATTTGCAAGGCGTTAGGCCTGATGGCTCTAGTTTTAAAGAAAAATTCGCACTGGATAAAGCCTA CCAAAACAAAGAAAGCGCGACTAAAGTGAGCGATTTGTTGGATAAAATCGCTCACGCTTACGGGAACACTTCGCAAAATA AAGTCGTGGATGTGAGTTTGAATAATTGGGGGCAAATTGAGATCAAAAACCTAACGCCTGGCAGTGAAAATTTGGATTTT CATTTGATTTCTAGCGATGGGGATTTTGATGATTTAGACGCCTTGCGTTCGAGCGGTAAAAGGGTTACTGAATACGTCAA AAGCGCGTTTGTAACGGATAGGAGTTTGAGCCAAGTTAAAGCGGTGCCTAGCATGTATAATCCCAAGGTGCTTGAAATCC CTAGCGTGTTTGTCACTAAAGATAATGTTTTAGCCAACAAAAACACTAAATTGAGCGAGATTTTTGGCGGTAGCGTGGAA ACTTTAAAAATCAATGCCAGCCGTTTGGACGATGAAAGCCTTATTAAAATCCCAAACCTCCCTGTTTATTTGGACATTCC CATTCTTTTAGACGTGAAAAACTCTACGATTAAAGATTTGAAAGATGCGATTAAAGAACGCTTTAACAATGAAGTGGATG TGGAAATTGAAACAAACGGGCGTTTGAGGATTATTGACAATTCTTCTAAAGAATCGCCTATTTCTTTGGCTTTAAGCACT CTAGATCAAAAAGGACTGGAAGTGGCCGGCATTCCTACTAATAACGCGAGCGAATACCAAAAAACCTATTTCAATAAAGA AGGGGCAAAATTAGAAAGCAATGTCGCTCAAATCGCTCAAAATGGCGCAGCTAATGGCTCTACCAAACTGAGTGAGGTCG CTAAGGGGAGTTTAGAAAATAGCGTTTTTAACATGAAATTAAACGATGTGAATGGTTCGTTTTTAGAAGCGCAAATGATC TTGGATAATAATGGGGCTTTTTTAAGTTTGCCTAATGGCATTAAAATCCCGCTTTACGACCCCACAAGCGCTGATATTCA AGCTTCTAAACCCAATGAAGTAACTTACAGGCAACTTATGGATGCGATGAGTATCGCGCTCAATTACAGCAATACTGACC CTGCAATCTACCAACAAATCAGCGATAACCCTACTTCAAAAGAAAGCAAGGAGCGCTTTATTGGATTGTTAAAACAAGCT AAAGGCAACCTTTCTGTTAATTTGAATGAAGAGGGAAAAGTCATTATCCAAGATAACATGCATTCAAACACCAAAATGCA GTTCATGCTTTTTGATAAAGACGCTAATGATTTTTCTCAAAACGCCTTGCACAGCGACAAACCAAGCCTTAAATTAAACG CTAATAACGCTCTCATTATTGACAAGCCCAGCGTGAATTTTTTTGATCAATTAGAAAATACCATCACTTCTGTAAGAAAA GGGATTTATCGCCCGGACGCTTTAGGGGATACTTATTCTAGCGATATGCGTAATTTAGGCATTCAAAACGGCATCACCCT TATAGATCACTTAAGCGATCACATAGAAAAAATGATCGCTAAAAACGGCTCTCATGGCAAGGCGTTTGAGAACATTATCA GGCGTAATGAAGTTTTAAAAACGCAAGTTCAAAGCATTCGTGGGGAAACGACCGGCACGGATATGGCAGAAACTTACAAC AAATTTTCCAATCTCACTAACAACTATAACGCCGTTTTGGCTTCCACGAACAAAATCAATAATTTGTCTTTAACGAAATA TTTGTAG
Upstream 100 bases:
>100_bases ACCCGCCATTATTAACCCGTATTGCCCCACTCACAATTGTTATTAATTTGTTTTGGAATACTTTTAGCTTGTTTGTTAAA AAACCAATAAGGATTTGATC
Downstream 100 bases:
>100_bases TCTTTTGGTGGTTTTTAAGCGTTCTAAAAAGAGATATTAAAATGCTTTTAAGCTTCTATGAAGCCCCCCTCCTTTTGCCC TTTATTTCGTGGGCAAATCG
Product: flagellar hook-associated protein FlgL
Products: NA
Alternate protein names: HAP3 [H]
Number of amino acids: Translated: 828; Mature: 828
Protein sequence:
>828_residues MRVTFGSKYNQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEENTLDQGIDVAKNAYTSTLNTDKAL QEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERLREHMMNVANTSIGGEFLFGGSKVDRPPIDSNGKYHGNGEDLNA LISSDNLVPYNISGQDLFLGADKDKHKLITTNIKLFNQNKLHPDVMDALEHSSLPEEVFIKPSDTLRELIGDNDKDPTND PKEFFYLQGVRPDGSSFKEKFALDKAYQNKESATKVSDLLDKIAHAYGNTSQNKVVDVSLNNWGQIEIKNLTPGSENLDF HLISSDGDFDDLDALRSSGKRVTEYVKSAFVTDRSLSQVKAVPSMYNPKVLEIPSVFVTKDNVLANKNTKLSEIFGGSVE TLKINASRLDDESLIKIPNLPVYLDIPILLDVKNSTIKDLKDAIKERFNNEVDVEIETNGRLRIIDNSSKESPISLALST LDQKGLEVAGIPTNNASEYQKTYFNKEGAKLESNVAQIAQNGAANGSTKLSEVAKGSLENSVFNMKLNDVNGSFLEAQMI LDNNGAFLSLPNGIKIPLYDPTSADIQASKPNEVTYRQLMDAMSIALNYSNTDPAIYQQISDNPTSKESKERFIGLLKQA KGNLSVNLNEEGKVIIQDNMHSNTKMQFMLFDKDANDFSQNALHSDKPSLKLNANNALIIDKPSVNFFDQLENTITSVRK GIYRPDALGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGSHGKAFENIIRRNEVLKTQVQSIRGETTGTDMAETYN KFSNLTNNYNAVLASTNKINNLSLTKYL
Sequences:
>Translated_828_residues MRVTFGSKYNQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEENTLDQGIDVAKNAYTSTLNTDKAL QEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERLREHMMNVANTSIGGEFLFGGSKVDRPPIDSNGKYHGNGEDLNA LISSDNLVPYNISGQDLFLGADKDKHKLITTNIKLFNQNKLHPDVMDALEHSSLPEEVFIKPSDTLRELIGDNDKDPTND PKEFFYLQGVRPDGSSFKEKFALDKAYQNKESATKVSDLLDKIAHAYGNTSQNKVVDVSLNNWGQIEIKNLTPGSENLDF HLISSDGDFDDLDALRSSGKRVTEYVKSAFVTDRSLSQVKAVPSMYNPKVLEIPSVFVTKDNVLANKNTKLSEIFGGSVE TLKINASRLDDESLIKIPNLPVYLDIPILLDVKNSTIKDLKDAIKERFNNEVDVEIETNGRLRIIDNSSKESPISLALST LDQKGLEVAGIPTNNASEYQKTYFNKEGAKLESNVAQIAQNGAANGSTKLSEVAKGSLENSVFNMKLNDVNGSFLEAQMI LDNNGAFLSLPNGIKIPLYDPTSADIQASKPNEVTYRQLMDAMSIALNYSNTDPAIYQQISDNPTSKESKERFIGLLKQA KGNLSVNLNEEGKVIIQDNMHSNTKMQFMLFDKDANDFSQNALHSDKPSLKLNANNALIIDKPSVNFFDQLENTITSVRK GIYRPDALGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGSHGKAFENIIRRNEVLKTQVQSIRGETTGTDMAETYN KFSNLTNNYNAVLASTNKINNLSLTKYL >Mature_828_residues MRVTFGSKYNQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEENTLDQGIDVAKNAYTSTLNTDKAL QEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERLREHMMNVANTSIGGEFLFGGSKVDRPPIDSNGKYHGNGEDLNA LISSDNLVPYNISGQDLFLGADKDKHKLITTNIKLFNQNKLHPDVMDALEHSSLPEEVFIKPSDTLRELIGDNDKDPTND PKEFFYLQGVRPDGSSFKEKFALDKAYQNKESATKVSDLLDKIAHAYGNTSQNKVVDVSLNNWGQIEIKNLTPGSENLDF HLISSDGDFDDLDALRSSGKRVTEYVKSAFVTDRSLSQVKAVPSMYNPKVLEIPSVFVTKDNVLANKNTKLSEIFGGSVE TLKINASRLDDESLIKIPNLPVYLDIPILLDVKNSTIKDLKDAIKERFNNEVDVEIETNGRLRIIDNSSKESPISLALST LDQKGLEVAGIPTNNASEYQKTYFNKEGAKLESNVAQIAQNGAANGSTKLSEVAKGSLENSVFNMKLNDVNGSFLEAQMI LDNNGAFLSLPNGIKIPLYDPTSADIQASKPNEVTYRQLMDAMSIALNYSNTDPAIYQQISDNPTSKESKERFIGLLKQA KGNLSVNLNEEGKVIIQDNMHSNTKMQFMLFDKDANDFSQNALHSDKPSLKLNANNALIIDKPSVNFFDQLENTITSVRK GIYRPDALGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGSHGKAFENIIRRNEVLKTQVQSIRGETTGTDMAETYN KFSNLTNNYNAVLASTNKINNLSLTKYL
Specific function: Unknown
COG id: COG1344
COG function: function code N; Flagellin and related hook-associated proteins
Gene ontology:
Cell location: Secreted. Bacterial flagellum [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial flagellin family [H]
Homologues:
None
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013384 - InterPro: IPR001029 [H]
Pfam domain/function: PF00700 Flagellin_C; PF00669 Flagellin_N [H]
EC number: NA
Molecular weight: Translated: 92030; Mature: 92030
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS00287 CYSTATIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVTFGSKYNQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEENTLD CEEECCCCHHHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCHH QGIDVAKNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERLREH HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MMNVANTSIGGEFLFGGSKVDRPPIDSNGKYHGNGEDLNALISSDNLVPYNISGQDLFLG HHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHEECCCCEEEEECCCCEEEEE ADKDKHKLITTNIKLFNQNKLHPDVMDALEHSSLPEEVFIKPSDTLRELIGDNDKDPTND CCCCCCEEEEEEEEEECCCCCCHHHHHHHHHCCCCHHEEECCHHHHHHHHCCCCCCCCCC PKEFFYLQGVRPDGSSFKEKFALDKAYQNKESATKVSDLLDKIAHAYGNTSQNKVVDVSL CCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE NNWGQIEIKNLTPGSENLDFHLISSDGDFDDLDALRSSGKRVTEYVKSAFVTDRSLSQVK CCCCEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHH AVPSMYNPKVLEIPSVFVTKDNVLANKNTKLSEIFGGSVETLKINASRLDDESLIKIPNL HCCCCCCCEEEECCEEEEECCCEEECCCCCHHHHHCCCEEEEEEEHHHCCCCCEEECCCC PVYLDIPILLDVKNSTIKDLKDAIKERFNNEVDVEIETNGRLRIIDNSSKESPISLALST CEEEECEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCCCHHHHHHH LDQKGLEVAGIPTNNASEYQKTYFNKEGAKLESNVAQIAQNGAANGSTKLSEVAKGSLEN HHHCCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC SVFNMKLNDVNGSFLEAQMILDNNGAFLSLPNGIKIPLYDPTSADIQASKPNEVTYRQLM CEEEEEEECCCCCEEEEEEEEECCCCEEECCCCCEEEEECCCCCCEECCCCCCHHHHHHH DAMSIALNYSNTDPAIYQQISDNPTSKESKERFIGLLKQAKGNLSVNLNEEGKVIIQDNM HHHHHEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCC HSNTKMQFMLFDKDANDFSQNALHSDKPSLKLNANNALIIDKPSVNFFDQLENTITSVRK CCCCEEEEEEEECCCCHHHHHCCCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHH GIYRPDALGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGSHGKAFENIIRRNEVLK CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH TQVQSIRGETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL HHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEECCC >Mature Secondary Structure MRVTFGSKYNQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEENTLD CEEECCCCHHHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCHH QGIDVAKNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERLREH HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MMNVANTSIGGEFLFGGSKVDRPPIDSNGKYHGNGEDLNALISSDNLVPYNISGQDLFLG HHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHEECCCCEEEEECCCCEEEEE ADKDKHKLITTNIKLFNQNKLHPDVMDALEHSSLPEEVFIKPSDTLRELIGDNDKDPTND CCCCCCEEEEEEEEEECCCCCCHHHHHHHHHCCCCHHEEECCHHHHHHHHCCCCCCCCCC PKEFFYLQGVRPDGSSFKEKFALDKAYQNKESATKVSDLLDKIAHAYGNTSQNKVVDVSL CCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE NNWGQIEIKNLTPGSENLDFHLISSDGDFDDLDALRSSGKRVTEYVKSAFVTDRSLSQVK CCCCEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHH AVPSMYNPKVLEIPSVFVTKDNVLANKNTKLSEIFGGSVETLKINASRLDDESLIKIPNL HCCCCCCCEEEECCEEEEECCCEEECCCCCHHHHHCCCEEEEEEEHHHCCCCCEEECCCC PVYLDIPILLDVKNSTIKDLKDAIKERFNNEVDVEIETNGRLRIIDNSSKESPISLALST CEEEECEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCCCHHHHHHH LDQKGLEVAGIPTNNASEYQKTYFNKEGAKLESNVAQIAQNGAANGSTKLSEVAKGSLEN HHHCCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC SVFNMKLNDVNGSFLEAQMILDNNGAFLSLPNGIKIPLYDPTSADIQASKPNEVTYRQLM CEEEEEEECCCCCEEEEEEEEECCCCEEECCCCCEEEEECCCCCCEECCCCCCHHHHHHH DAMSIALNYSNTDPAIYQQISDNPTSKESKERFIGLLKQAKGNLSVNLNEEGKVIIQDNM HHHHHEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCC HSNTKMQFMLFDKDANDFSQNALHSDKPSLKLNANNALIIDKPSVNFFDQLENTITSVRK CCCCEEEEEEEECCCCHHHHHCCCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHH GIYRPDALGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGSHGKAFENIIRRNEVLK CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH TQVQSIRGETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL HHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]