| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is yesF [H]
Identifier: 107023101
GI number: 107023101
Start: 1722300
End: 1723124
Strand: Reverse
Name: yesF [H]
Synonym: Bcen_1550
Alternate gene names: 107023101
Gene position: 1723124-1722300 (Counterclockwise)
Preceding gene: 107023103
Following gene: 107023100
Centisome position: 52.3
GC content: 74.55
Gene sequence:
>825_bases ATGTCGGCCCTTCCCATCCTCATCGTCGGCGGCTCGGGCAAGACGGGCGCCCGCGTCGATGCCCGGCTGCGCGCGCGCGG CCTCGCGACGCGGCCGGTGTCGCGCACGTCGGCCGTTCGCTTCGACTGGACGGCGCCCGAGACCTGGCCCGCCGCGCTCG ACGGCGTGTCGGCCGCCTATGTGACCTACCAGCCCGATCTGGCCGTCGAAGGCGCGGTGGAGGCGATCGCCGGATTCGCG CGGCTCGCGCGGGGGAGCGGCGTCGAGCGCGTGGTGCTGCTGTCCGGGCGCGGCGAGCCGCGTGCGCAGGCGGCCGAGGC TGCATTACAGGCGTCGGGCGTGGGCTGGGGTGTCGTGCGCGCAAGCTGGTTCAACCAGAACTTCTCCGAGGGCTATCTGC TCGACGGCGTGCTGGCCGGCGAAGTCGCGCTGCCGGCCGGCGCGGTGCGCGAGCCGTTCGTCGATGCGGACGACATCGCG GACGTTGCCGCGGCCGCGCTCACCGATGCGCGCTTCGCGAGCCGCGTGATCGAGGTGACGGGCCCGCGCGCGCTGACGTT CGCGGAAGCGGTCGGCGAAATCGCGCGGGCCGCCGGGCGGCCGATCGCCTACCGCGAGATTCCGCACGATGCATTCGTCG CGGGGCTGAGCGAGGTCGGTGTGCCGGAGCCGGTCGTCGCGCTGCTCGACGACCTGTTCGACGGGGTGCTCGACGGGCGC AACAGCGCGGTGACGCACGGGGTCGAGGCCACGCTCGGGCGCCCGGCGCGCGATTTCGCCGACTATGCGCGCGCGGTCGC CGCGACCGGCGTATGGAGCGCCTGA
Upstream 100 bases:
>100_bases CGTCGTTCTGCCCCGATTTTTGTCGGCCCATGCCGTCTCCCGAAAAACTTGACGTTGCTAATGCGAGAGTCTATCGTGTT TTTCAAAAAAGGAGACGCAC
Downstream 100 bases:
>100_bases CCATGATCGCGTTCGTGACTTCAGCGTTGCTGTGGGGTTCGGCCATTGGCTGCGGGTTGATGGCCGGCGTGTACTTCGCG TTCTCGACGTTCGTGATGAC
Product: NmrA-like
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MSALPILIVGGSGKTGARVDARLRARGLATRPVSRTSAVRFDWTAPETWPAALDGVSAAYVTYQPDLAVEGAVEAIAGFA RLARGSGVERVVLLSGRGEPRAQAAEAALQASGVGWGVVRASWFNQNFSEGYLLDGVLAGEVALPAGAVREPFVDADDIA DVAAAALTDARFASRVIEVTGPRALTFAEAVGEIARAAGRPIAYREIPHDAFVAGLSEVGVPEPVVALLDDLFDGVLDGR NSAVTHGVEATLGRPARDFADYARAVAATGVWSA
Sequences:
>Translated_274_residues MSALPILIVGGSGKTGARVDARLRARGLATRPVSRTSAVRFDWTAPETWPAALDGVSAAYVTYQPDLAVEGAVEAIAGFA RLARGSGVERVVLLSGRGEPRAQAAEAALQASGVGWGVVRASWFNQNFSEGYLLDGVLAGEVALPAGAVREPFVDADDIA DVAAAALTDARFASRVIEVTGPRALTFAEAVGEIARAAGRPIAYREIPHDAFVAGLSEVGVPEPVVALLDDLFDGVLDGR NSAVTHGVEATLGRPARDFADYARAVAATGVWSA >Mature_273_residues SALPILIVGGSGKTGARVDARLRARGLATRPVSRTSAVRFDWTAPETWPAALDGVSAAYVTYQPDLAVEGAVEAIAGFAR LARGSGVERVVLLSGRGEPRAQAAEAALQASGVGWGVVRASWFNQNFSEGYLLDGVLAGEVALPAGAVREPFVDADDIAD VAAAALTDARFASRVIEVTGPRALTFAEAVGEIARAAGRPIAYREIPHDAFVAGLSEVGVPEPVVALLDDLFDGVLDGRN SAVTHGVEATLGRPARDFADYARAVAATGVWSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NmrA-type oxidoreductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR008030 [H]
Pfam domain/function: PF05368 NmrA [H]
EC number: NA
Molecular weight: Translated: 28319; Mature: 28188
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSALPILIVGGSGKTGARVDARLRARGLATRPVSRTSAVRFDWTAPETWPAALDGVSAAY CCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCEEEE VTYQPDLAVEGAVEAIAGFARLARGSGVERVVLLSGRGEPRAQAAEAALQASGVGWGVVR EEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHH ASWFNQNFSEGYLLDGVLAGEVALPAGAVREPFVDADDIADVAAAALTDARFASRVIEVT HHHHCCCCCCCEEECCEEECCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC GPRALTFAEAVGEIARAAGRPIAYREIPHDAFVAGLSEVGVPEPVVALLDDLFDGVLDGR CCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC NSAVTHGVEATLGRPARDFADYARAVAATGVWSA CCHHHCCHHHHCCCCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SALPILIVGGSGKTGARVDARLRARGLATRPVSRTSAVRFDWTAPETWPAALDGVSAAY CCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCEEEE VTYQPDLAVEGAVEAIAGFARLARGSGVERVVLLSGRGEPRAQAAEAALQASGVGWGVVR EEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHH ASWFNQNFSEGYLLDGVLAGEVALPAGAVREPFVDADDIADVAAAALTDARFASRVIEVT HHHHCCCCCCCEEECCEEECCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC GPRALTFAEAVGEIARAAGRPIAYREIPHDAFVAGLSEVGVPEPVVALLDDLFDGVLDGR CCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC NSAVTHGVEATLGRPARDFADYARAVAATGVWSA CCHHHCCHHHHCCCCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]