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The map label for this gene is ygbK [C]

Identifier: 107023086

GI number: 107023086

Start: 1707879

End: 1709156

Strand: Reverse

Name: ygbK [C]

Synonym: Bcen_1535

Alternate gene names: 107023086

Gene position: 1709156-1707879 (Counterclockwise)

Preceding gene: 107023087

Following gene: 107023085

Centisome position: 51.88

GC content: 70.27

Gene sequence:

>1278_bases
GTGAACGCGCTCGCCCCGCACGCAGCACGGCTGCTGATCGTCGCCGACGACCTGTCGGGCGCGGCCGACTGCGCGGTTGC
CGGGTTGCGTCACGGCCTGACGGCCATGGTCGTGCTCGATGCCGCGCACGCGGCGGCGGCGCCACATGGGGTCGACATTC
TGTCGATCGACGTGGATTCGCGCCGCTTGCCGAAGGACGTGGCCGCGCGACGCACCGTCGATGCGGTCGCGTCGTTGTCG
AATGCCGGCACGCGCCTCTACAAGAAGGTGGACTCGACGCTGCGCGGCAACTTCGCGGCGGAAGTCGCCGCGCTGACGTC
GCGCGCCGGAATGGCGATCGTGTGCCCGGCCTACCCGGCCTCGGGACGCACGACCATCGACGGCCGCCAATGGGTGCGCG
GCGTGCCCGTGGAAGCGAGCGAATACTGGCGCAACGAACACATCCCGGGCACGGCAGATCTCGTTGCATTGCTGTCCGCC
GAAGACCTGCGTGTCGCCTACACGGCAATCGGTACGGTGCGCGACAACGCAAACGCGCTCACCGCGCATCTGCGCGAGCT
GCAATCCGACCGCGTGCAAGCCGTCGTGTGCGACGCGGAATCCGACGACGACCTGCAACGCATCGCGCGTGCATCCGCGG
CGCTCGACGGCGTGTTCTGGGTCGGCTCGGCCGGCCTGGCCCCCGGCGTCATCGAAGCGCTGGGGCCACCGCATGGCGCG
AGCGGGCCGACGGCCGGCGGCCCGCATTCGAAAGGCCCCGTGCTGACGGTCGTAGGCAGCATGTCGAGCATTTCGCATGC
GCAGCTGGACTGCCTCAAGGCGAACGCGGGCACCCATCTCGTTGCGCTCGAAGTCAGCGTCTGCGCGCTGGACGACACGC
GAAGCGACGTCACGACCGTGGCAAGCGACGCGCTGCGTGGCGGCCGGCATGTCGTCGTCTCGTTGAGCCAGGCACGGCGC
GGCGACGTCAATGACGGGCTGCTGTTCTCCACGCGCCTCGCCGCGCTGCTCGCGCCAGCCGTGCGCCACGCCGGCGCAAT
CATCGCGACCGGCGGCGAAACGGCACGCGCGCTGCTCACCGCGGCCGGCGCGAGCGCGCTGCGTGTCGTCGACGAAATCG
AGGACGGCATGCCGCTGCTCGAATGCCGGCTGCACGGCAACGCACTGCCCGTCGTGACCAAGGCCGGCGGTTTCGGCCAG
CCCGAATCGATTTATCACGCCTGGCGCCGGCTTGCGAACACAGGCGAGCCGGCCGACACGGCCCAACCCAATCAGTGA

Upstream 100 bases:

>100_bases
CGCTCGCGGTTGCCGCATCGAAGGTCAAGCGCCTGCTCGGCAACAACCCGAAGGCGCTCACGCTCGACGACATGAAGTCC
ATCTACCGGCGCCTGCTGCC

Downstream 100 bases:

>100_bases
AGGGAATTGCCATGGACAACCGTCCCATCATCGGCATCACCATGGGCGACGCGGCCGGCGTCGGACCGGAAATCATCATG
AAGAGCCTCGCGCATGCATC

Product: type III effector Hrp-dependent outers

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MNALAPHAARLLIVADDLSGAADCAVAGLRHGLTAMVVLDAAHAAAAPHGVDILSIDVDSRRLPKDVAARRTVDAVASLS
NAGTRLYKKVDSTLRGNFAAEVAALTSRAGMAIVCPAYPASGRTTIDGRQWVRGVPVEASEYWRNEHIPGTADLVALLSA
EDLRVAYTAIGTVRDNANALTAHLRELQSDRVQAVVCDAESDDDLQRIARASAALDGVFWVGSAGLAPGVIEALGPPHGA
SGPTAGGPHSKGPVLTVVGSMSSISHAQLDCLKANAGTHLVALEVSVCALDDTRSDVTTVASDALRGGRHVVVSLSQARR
GDVNDGLLFSTRLAALLAPAVRHAGAIIATGGETARALLTAAGASALRVVDEIEDGMPLLECRLHGNALPVVTKAGGFGQ
PESIYHAWRRLANTGEPADTAQPNQ

Sequences:

>Translated_425_residues
MNALAPHAARLLIVADDLSGAADCAVAGLRHGLTAMVVLDAAHAAAAPHGVDILSIDVDSRRLPKDVAARRTVDAVASLS
NAGTRLYKKVDSTLRGNFAAEVAALTSRAGMAIVCPAYPASGRTTIDGRQWVRGVPVEASEYWRNEHIPGTADLVALLSA
EDLRVAYTAIGTVRDNANALTAHLRELQSDRVQAVVCDAESDDDLQRIARASAALDGVFWVGSAGLAPGVIEALGPPHGA
SGPTAGGPHSKGPVLTVVGSMSSISHAQLDCLKANAGTHLVALEVSVCALDDTRSDVTTVASDALRGGRHVVVSLSQARR
GDVNDGLLFSTRLAALLAPAVRHAGAIIATGGETARALLTAAGASALRVVDEIEDGMPLLECRLHGNALPVVTKAGGFGQ
PESIYHAWRRLANTGEPADTAQPNQ
>Mature_425_residues
MNALAPHAARLLIVADDLSGAADCAVAGLRHGLTAMVVLDAAHAAAAPHGVDILSIDVDSRRLPKDVAARRTVDAVASLS
NAGTRLYKKVDSTLRGNFAAEVAALTSRAGMAIVCPAYPASGRTTIDGRQWVRGVPVEASEYWRNEHIPGTADLVALLSA
EDLRVAYTAIGTVRDNANALTAHLRELQSDRVQAVVCDAESDDDLQRIARASAALDGVFWVGSAGLAPGVIEALGPPHGA
SGPTAGGPHSKGPVLTVVGSMSSISHAQLDCLKANAGTHLVALEVSVCALDDTRSDVTTVASDALRGGRHVVVSLSQARR
GDVNDGLLFSTRLAALLAPAVRHAGAIIATGGETARALLTAAGASALRVVDEIEDGMPLLECRLHGNALPVVTKAGGFGQ
PESIYHAWRRLANTGEPADTAQPNQ

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=270, Percent_Identity=25.9259259259259, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 43792; Mature: 43792

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALAPHAARLLIVADDLSGAADCAVAGLRHGLTAMVVLDAAHAAAAPHGVDILSIDVDS
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEEEEHHHHHCCCCCCEEEEEECCC
RRLPKDVAARRTVDAVASLSNAGTRLYKKVDSTLRGNFAAEVAALTSRAGMAIVCPAYPA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEECCCCC
SGRTTIDGRQWVRGVPVEASEYWRNEHIPGTADLVALLSAEDLRVAYTAIGTVRDNANAL
CCCEEECHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCHHH
TAHLRELQSDRVQAVVCDAESDDDLQRIARASAALDGVFWVGSAGLAPGVIEALGPPHGA
HHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHCCCCCCC
SGPTAGGPHSKGPVLTVVGSMSSISHAQLDCLKANAGTHLVALEVSVCALDDTRSDVTTV
CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHEECCCCCEEEEEEEEEEEECCCCHHHHHH
ASDALRGGRHVVVSLSQARRGDVNDGLLFSTRLAALLAPAVRHAGAIIATGGETARALLT
HHHHHCCCCEEEEEECHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHH
AAGASALRVVDEIEDGMPLLECRLHGNALPVVTKAGGFGQPESIYHAWRRLANTGEPADT
HCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCC
AQPNQ
CCCCC
>Mature Secondary Structure
MNALAPHAARLLIVADDLSGAADCAVAGLRHGLTAMVVLDAAHAAAAPHGVDILSIDVDS
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEEEEHHHHHCCCCCCEEEEEECCC
RRLPKDVAARRTVDAVASLSNAGTRLYKKVDSTLRGNFAAEVAALTSRAGMAIVCPAYPA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEECCCCC
SGRTTIDGRQWVRGVPVEASEYWRNEHIPGTADLVALLSAEDLRVAYTAIGTVRDNANAL
CCCEEECHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCHHH
TAHLRELQSDRVQAVVCDAESDDDLQRIARASAALDGVFWVGSAGLAPGVIEALGPPHGA
HHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHCCCCCCC
SGPTAGGPHSKGPVLTVVGSMSSISHAQLDCLKANAGTHLVALEVSVCALDDTRSDVTTV
CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHEECCCCCEEEEEEEEEEEECCCCHHHHHH
ASDALRGGRHVVVSLSQARRGDVNDGLLFSTRLAALLAPAVRHAGAIIATGGETARALLT
HHHHHCCCCEEEEEECHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHH
AAGASALRVVDEIEDGMPLLECRLHGNALPVVTKAGGFGQPESIYHAWRRLANTGEPADT
HCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCC
AQPNQ
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]