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The map label for this gene is yulB [H]

Identifier: 107023082

GI number: 107023082

Start: 1703190

End: 1703996

Strand: Reverse

Name: yulB [H]

Synonym: Bcen_1531

Alternate gene names: 107023082

Gene position: 1703996-1703190 (Counterclockwise)

Preceding gene: 107023083

Following gene: 107023081

Centisome position: 51.72

GC content: 68.9

Gene sequence:

>807_bases
ATGAAAGTGACCAGGCGCCGGGAGGCGATGCTGCAGGCCGTGCTCGGGGGCATGACGGACGTCGCGACGCTGTGCGAGCA
CTTCGGGATGTCCGAGGCGACGGTGCGTCGCGACCTGCGTGCGCTGGCGAGCGACCGCCGCATTCTGCGCACGTACGGCG
GCGCCGCCGCGGTCGGCGGCCACGAGCCCGAGCCGTCGCTCGAGGAGCGGCGCATCAGCTCGCAGGAACAGAAGGAAGCA
ATCGCGCACGCGGCGAGTTCGTTCGTCGAGGACGGCGACACCGTGTTTCTCGACGGCGGCACCACGACGGCGGCGCTCGC
GCGTCTTCTCGCGGGCCGGGCGGACGTTCACGTGGTCACCAACAACCTGCTGGTCGTGAGCCCGCTCGTGTCGTCGGGCG
TGCACGTGACGGTGATCGGCGGCGATGTGCGGTCGTCCAGCATGAGCACGCTCGGGCCGCTCGCGCAAATCGCGCTGAGC
CGGCTGAGCGTCGACAAGGCATTCCTCGGCGCCGATGGCGTGGTGGCCGAGCTGGGATTGTGCGAGGCGAGCAGCGAGCA
GTCGTATCTGAAGGAATGCGTGATGCGGCAGGCAGCCGAGGTGTTCGTGCTGGTGACCGCGGACAAGCTCGGGCGCGCGA
GCCAACAGCACTGGACGCCGCTCGAACGCGACTGGACGCTCGTGACGGATGACGGCGCGCTGCACGAGCAGCTCGAACCG
TTTCATGCGCAGGCGAGGGTCACCGTTCAGGCGGTCAGCACGAAAGCAACGGCCGCATCCGGCGGGCCGCTGCAAGTTCA
AACGTAA

Upstream 100 bases:

>100_bases
CCCCGCGGCAACTGGCCGGTCACTGCGGCAATTCGATAAACTTGTCGGTCCAGAGGCGCGCCATGGTGCGCCGAATCGAT
CAGACCAGGAATTCACGCAC

Downstream 100 bases:

>100_bases
CGGGAGACATCGTGGCGCAACGGGAGCAGCCGGGTCTGGATTCACGTCATGCCGTCGTCACCGGTGCGTCGTCGGGAATC
GGCCGCGCGATCGTCGAGCG

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MKVTRRREAMLQAVLGGMTDVATLCEHFGMSEATVRRDLRALASDRRILRTYGGAAAVGGHEPEPSLEERRISSQEQKEA
IAHAASSFVEDGDTVFLDGGTTTAALARLLAGRADVHVVTNNLLVVSPLVSSGVHVTVIGGDVRSSSMSTLGPLAQIALS
RLSVDKAFLGADGVVAELGLCEASSEQSYLKECVMRQAAEVFVLVTADKLGRASQQHWTPLERDWTLVTDDGALHEQLEP
FHAQARVTVQAVSTKATAASGGPLQVQT

Sequences:

>Translated_268_residues
MKVTRRREAMLQAVLGGMTDVATLCEHFGMSEATVRRDLRALASDRRILRTYGGAAAVGGHEPEPSLEERRISSQEQKEA
IAHAASSFVEDGDTVFLDGGTTTAALARLLAGRADVHVVTNNLLVVSPLVSSGVHVTVIGGDVRSSSMSTLGPLAQIALS
RLSVDKAFLGADGVVAELGLCEASSEQSYLKECVMRQAAEVFVLVTADKLGRASQQHWTPLERDWTLVTDDGALHEQLEP
FHAQARVTVQAVSTKATAASGGPLQVQT
>Mature_268_residues
MKVTRRREAMLQAVLGGMTDVATLCEHFGMSEATVRRDLRALASDRRILRTYGGAAAVGGHEPEPSLEERRISSQEQKEA
IAHAASSFVEDGDTVFLDGGTTTAALARLLAGRADVHVVTNNLLVVSPLVSSGVHVTVIGGDVRSSSMSTLGPLAQIALS
RLSVDKAFLGADGVVAELGLCEASSEQSYLKECVMRQAAEVFVLVTADKLGRASQQHWTPLERDWTLVTDDGALHEQLEP
FHAQARVTVQAVSTKATAASGGPLQVQT

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=245, Percent_Identity=31.8367346938775, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789829, Length=214, Percent_Identity=31.7757009345794, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1789519, Length=240, Percent_Identity=30.4166666666667, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1787540, Length=227, Percent_Identity=28.6343612334802, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI226510968, Length=235, Percent_Identity=28.936170212766, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788069, Length=193, Percent_Identity=29.5336787564767, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082344, Length=189, Percent_Identity=28.042328042328, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790753, Length=218, Percent_Identity=28.4403669724771, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1790635, Length=231, Percent_Identity=26.4069264069264, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28443; Mature: 28443

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVTRRREAMLQAVLGGMTDVATLCEHFGMSEATVRRDLRALASDRRILRTYGGAAAVGG
CCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCC
HEPEPSLEERRISSQEQKEAIAHAASSFVEDGDTVFLDGGTTTAALARLLAGRADVHVVT
CCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEE
NNLLVVSPLVSSGVHVTVIGGDVRSSSMSTLGPLAQIALSRLSVDKAFLGADGVVAELGL
CCEEEEEHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC
CEASSEQSYLKECVMRQAAEVFVLVTADKLGRASQQHWTPLERDWTLVTDDGALHEQLEP
CCCCCHHHHHHHHHHHHHHHEEEEEECHHHCCCCHHHCCCCCCCCEEEECCCHHHHHHCC
FHAQARVTVQAVSTKATAASGGPLQVQT
HHHHHEEEEEEECCHHCCCCCCCEEECC
>Mature Secondary Structure
MKVTRRREAMLQAVLGGMTDVATLCEHFGMSEATVRRDLRALASDRRILRTYGGAAAVGG
CCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCC
HEPEPSLEERRISSQEQKEAIAHAASSFVEDGDTVFLDGGTTTAALARLLAGRADVHVVT
CCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEE
NNLLVVSPLVSSGVHVTVIGGDVRSSSMSTLGPLAQIALSRLSVDKAFLGADGVVAELGL
CCEEEEEHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC
CEASSEQSYLKECVMRQAAEVFVLVTADKLGRASQQHWTPLERDWTLVTDDGALHEQLEP
CCCCCHHHHHHHHHHHHHHHEEEEEECHHHCCCCHHHCCCCCCCCEEEECCCHHHHHHCC
FHAQARVTVQAVSTKATAASGGPLQVQT
HHHHHEEEEEEECCHHCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]