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The map label for this gene is ycdK [C]

Identifier: 107023006

GI number: 107023006

Start: 1611187

End: 1611552

Strand: Reverse

Name: ycdK [C]

Synonym: Bcen_1454

Alternate gene names: 107023006

Gene position: 1611552-1611187 (Counterclockwise)

Preceding gene: 107023009

Following gene: 107023005

Centisome position: 48.92

GC content: 65.85

Gene sequence:

>366_bases
ATGCGTCAACGGATCAGTACCGGCTCCCCGTGGGAGCCGAAGGTGGGCTATTCGCGTGCCGTGGTCGTCGACAACACGAT
CTACGTGTCGGGGACGGCCGGCAAAGGCGACGACGTATATGCGCAGACGCGCGATGCGTTGGCGACGCTCGGCAAGGTCC
TCGCGGACAGCGGATTCGCGCTGTCGGATGTCGTCCAGAGCCGGCTGGTGGTCGCCGACTTCGACCATTGGGAAGACGCG
GCACGTGCGCACGGCGAGATATACGGCGAGATCCGGCCGGCGTTCTCGCTGGTCCATGCGTTGCCGTTCGTCGATCCGGA
GATTCGGGTCGAAGTCGAGGCGATCGCGGTCCGGCCCGTCGCATGA

Upstream 100 bases:

>100_bases
GGCGGTGCTTGATTAACTACCGGAGTAGTATAAAATCGATCTCACTTACTACCGAAGTAGTAAGTGAGATTTCCAAACCT
TGCCAAGGAGGATCATCAAG

Downstream 100 bases:

>100_bases
CGGTCGCCGGCCCGCACGCGTACCTGTCCCGCACCGCGATCGCGATGCTGGCGCTCGCGGCGGGCGTCGCGATCGCCAAC
GGCTATGCGCTGCAGCCGTC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MRQRISTGSPWEPKVGYSRAVVVDNTIYVSGTAGKGDDVYAQTRDALATLGKVLADSGFALSDVVQSRLVVADFDHWEDA
ARAHGEIYGEIRPAFSLVHALPFVDPEIRVEVEAIAVRPVA

Sequences:

>Translated_121_residues
MRQRISTGSPWEPKVGYSRAVVVDNTIYVSGTAGKGDDVYAQTRDALATLGKVLADSGFALSDVVQSRLVVADFDHWEDA
ARAHGEIYGEIRPAFSLVHALPFVDPEIRVEVEAIAVRPVA
>Mature_121_residues
MRQRISTGSPWEPKVGYSRAVVVDNTIYVSGTAGKGDDVYAQTRDALATLGKVLADSGFALSDVVQSRLVVADFDHWEDA
ARAHGEIYGEIRPAFSLVHALPFVDPEIRVEVEAIAVRPVA

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13110; Mature: 13110

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQRISTGSPWEPKVGYSRAVVVDNTIYVSGTAGKGDDVYAQTRDALATLGKVLADSGFA
CCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC
LSDVVQSRLVVADFDHWEDAARAHGEIYGEIRPAFSLVHALPFVDPEIRVEVEAIAVRPV
HHHHHHHCEEEEECCCHHHHHHHCHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECC
A
C
>Mature Secondary Structure
MRQRISTGSPWEPKVGYSRAVVVDNTIYVSGTAGKGDDVYAQTRDALATLGKVLADSGFA
CCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC
LSDVVQSRLVVADFDHWEDAARAHGEIYGEIRPAFSLVHALPFVDPEIRVEVEAIAVRPV
HHHHHHHCEEEEECCCHHHHHHHCHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953; 2199329 [H]