| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is 107022963
Identifier: 107022963
GI number: 107022963
Start: 1554994
End: 1557864
Strand: Reverse
Name: 107022963
Synonym: Bcen_1411
Alternate gene names: NA
Gene position: 1557864-1554994 (Counterclockwise)
Preceding gene: 107022967
Following gene: 107022962
Centisome position: 47.29
GC content: 62.97
Gene sequence:
>2871_bases ATGCTGCGCGCCTTCGTTGGCGCGCTCGATCAGAACAATCGTGCGATCCGGTTTCATTGGGGCCGTCATCAGGATGCGCT GGCGCATGTCCTGGTGCCACAGAGCATCGATTTGACGGAAGGTCTCTGTGTCGGCATCGAAGGGCACCTGACCTGCCTGT CGTCACGCCCGGATCTGCCGCTCTCCGCCTTTCTGGGGTTGCCGCTTTCGGTGCAACTGATGACGGATCGAGGCAAGCCA TATCCGATCAATGGGATCATCACAGATGTCCGCGCCGGTCAATCGGACGGCTCCCTCACGTGCGTACAACTGACATTGAG AGATGCGCTGAGTATTCTCGATCAGCGGATCAACAGCAGAACGTTCCGTTCGATGAGTGTTCCGGACATTCTGGAGACAC TGCTGCACGAATGGCAGCAACGCAGTTCCGCGTTGGCGCAGGCTTTCGATTTCGAGCTCGTGCTGGATCGCAACCAGTAT CCAAAGCGCGAGCAGACGCGCCAGGCGGGTGAATCGGATGCGGCCTTCATTCGACGGATGTGTCGACGCGACGGTATTTT CTGGTACACCCGGGCTGGCAAGCATGATGGTGCGGCCGCCGACACGCCGGTCCATACGCTCGTGTTCTGCGACGATCCGA CGAAGCTGCCACAGGCGGCGGCAGGCCATGTGCCTTACCACCGGGGTACGCAGTCGCGGGAGCGTGACTCGGTCACGCTA TGGTCCGCGGCCCGTGCGTTGACGCCCGGAAGTGTGCGGCGTGCCAGTTGGGATTACAAGACCGGCAGGATCGCGCAGTC TGAGCAGGAGACGATCGTCGATCAGGGCGAGGCGGGCAACGATCTTGCGAAGCTGCTGGCCGACTCGGTCATCGACGTTC CGCATGCGGCGGACTCGGATGCCGACCACGAGCGTTTGGCGAAGGCTCGGATTCTGGCACATGAGCATCGCGCCGAATGC GTGCATGCGTCGAGCGATGTCCGGGATGTCTCGCCGGGCTTCTGGTTCACGCTGGCTGGGCATCCGGAGGTCGATACCCG GCCCGAGGAGCAGCGGCAGTTCGTCGTTACCAGCTTGCACCACCGGGCGACCAACAATTTTTCGAAGGCGCTCGACGAGC GGGCCCAAGTGCTGTTTGCCGCGAGTCGCTGGAGTTTCGACGCGTTGCCGGTCGAAGAGGGGGCCGGGGTTCGCTACGAG AACACATTCGTTTGCGTGCGCCGCGGTGTGCCGCTGACACCTGCCTACGATCCGCGCGTCGATTTGCCGCCCGTGCATCC GTTTACCGCGAAAGTGGTTGGCCAGGACGGCGAGGAAGTGCACTGCGACGAATTGGGGCGCATCAAGGTGCAGATTCTTG GTCTGCGCGCCGACGATCATGCCCATGCGCAAGGTGCCGGCACCAGCGGAACCGAGCGGGACAGCGCGTGGGTGAGATGG GTCAGCCCCTGGGCCGGGCCGAACTACGGCATGGACATGCTGCCGCGCGCGGGAATGGAAGTGCTGATCGACCATTTACA CGGTGACCCCGACAAGATGGTCGTGATCGGGGTGCTGCACGGTGGTCCCAACATGCCGACCACGTTCAGCCATACCGGCT CGCTTCCGGGCAATCGATATCTTTCCGGCATCAAGACCAAGGAGGTCAAGGCGGATCGCTACAACCAGTTGCGTTTCGAC GATACACCCGGCCAGATCAGTAGCCAGCTTGCCAGCGAACACACCTATACCCAGCTGAACCTGGGCTACCTGACGGAACC TCGTAACGATGGCAAGGGCGCGCCTCGTGGCGACGGTTTGGAGGCCAGAACCGATGCCCAGGCGGTCATTCGCGCCGCGA AGGGCGTCTACGTGACCGCGCAGCAGCAGGGGCGTGCCGAAGGCAAGATGCTCGAACGCACGGCGTTGCAGACGTTGATC GAACAATTGCAGGAACTGGTACGAAACCTCGGTGATGCGTCCGCCGCGAACGACGCCGACAACACCGACCTCGCACGCAT CGAGAAGATCACATCGCAGATCAAGGGCTGGGATGCTGGCAGCAACGTTGATCAGGGTGGCGGCGGCTCCGGCGGTGCGC CGATGGTGGCAATCGAGGGGCCGGCCGGCGTGACCGTGGTTAGCCAGGACGCGATGGTGCTCGGGGCACAGACCAACATC GATGCGGTGAGTGCCGGCAACACGCAGATCAGCGTGGGACGTCGTCTGTTGATGCGCGTCGGCGATTGGATGAGTGCTTT CGCGGCCAAGGGCATGACGCTGGTGACGGCAGACGGGAAGCTGCGTATCGAGGCGCACAAGGAGGACGTGGTTGTGAAGG CCGCCAAGCGCATCATCCTGGAGGCAGGCGAAGAGATCGTGTTCCGCTCGCCGAAGGTCAATACGCAGGCGAGCGACGAA GCGTCGATCAACGGCGGGTCGAGCTACAGCCAGTGGAATGGCGGCGGCGTCGTGCATGGCACGAGCGGCGTATGGCGCGA ACACGCGGCGTCGCACAGTCTCGTCGGGCCGGACAACAAGCCTGTGAAAGCGCCCGACCCCCTGACGTTCAAGGAGCTGG AGCAACAAGACAGCTTCGCGGTGGTGCTCCGTTCCCATCCCAGCGACGGGCGGCCGCTTGCTTACGAGCCGTACACCCTT TACAAGGGAGCGGCCAAGATTGCGGACGGCGTGACCGACGAGCATGGTCAACTGATCATTGCGAATCACCAGAAGGGCAC GTCTTCCTATACGGTCAAGCTGCACAACGGGCACGAGATCGAGGTGCCCGTGATGGAGGGAGGGTTGAGCGACGATGATC AACTGGCCGCGCAGGGATGGCGGGCAGTCGACGGCGATCCGGAATCGCGCCAGCGCCACGCACAGGGCTGA
Upstream 100 bases:
>100_bases CGTTGCACTTAAAATCGGTGACCAAATAATTAAGCGCAGGTGGCTTGGCGGTCTGAGAGCGCCGTTGCCGAATGCCCATT GACAAGTGAACGTGACCGAA
Downstream 100 bases:
>100_bases CCGGCGATTCGCTACAGTTTTCGACGAGAAACGTGATGTCCGATACCAATACTCAAAACAAATCGAAGGCGCCGATCGAT GTCGACAAGCGTCAGGCGGT
Product: Rhs element Vgr protein
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Rhs Element Vgr Family Protein; Vgr-Related Protein; VGR-Like Protein; VgrG Protein; Rhs Family Protein; Rhs Element Vgr Family; Rhs Accessory Genetic Element; Rhs-Family Protein; VGR-Related Type VI Secretion System Protein; Rhs Element Vgr Related Protein; Vgr Related Protein; Replication/Virulence Associated Protein; Conserved Hypothethical Protein; Rhs Element Vgr-Related Protein; Type VI Secretion System VgrG Family Protein; VrgG Protein
Number of amino acids: Translated: 956; Mature: 956
Protein sequence:
>956_residues MLRAFVGALDQNNRAIRFHWGRHQDALAHVLVPQSIDLTEGLCVGIEGHLTCLSSRPDLPLSAFLGLPLSVQLMTDRGKP YPINGIITDVRAGQSDGSLTCVQLTLRDALSILDQRINSRTFRSMSVPDILETLLHEWQQRSSALAQAFDFELVLDRNQY PKREQTRQAGESDAAFIRRMCRRDGIFWYTRAGKHDGAAADTPVHTLVFCDDPTKLPQAAAGHVPYHRGTQSRERDSVTL WSAARALTPGSVRRASWDYKTGRIAQSEQETIVDQGEAGNDLAKLLADSVIDVPHAADSDADHERLAKARILAHEHRAEC VHASSDVRDVSPGFWFTLAGHPEVDTRPEEQRQFVVTSLHHRATNNFSKALDERAQVLFAASRWSFDALPVEEGAGVRYE NTFVCVRRGVPLTPAYDPRVDLPPVHPFTAKVVGQDGEEVHCDELGRIKVQILGLRADDHAHAQGAGTSGTERDSAWVRW VSPWAGPNYGMDMLPRAGMEVLIDHLHGDPDKMVVIGVLHGGPNMPTTFSHTGSLPGNRYLSGIKTKEVKADRYNQLRFD DTPGQISSQLASEHTYTQLNLGYLTEPRNDGKGAPRGDGLEARTDAQAVIRAAKGVYVTAQQQGRAEGKMLERTALQTLI EQLQELVRNLGDASAANDADNTDLARIEKITSQIKGWDAGSNVDQGGGGSGGAPMVAIEGPAGVTVVSQDAMVLGAQTNI DAVSAGNTQISVGRRLLMRVGDWMSAFAAKGMTLVTADGKLRIEAHKEDVVVKAAKRIILEAGEEIVFRSPKVNTQASDE ASINGGSSYSQWNGGGVVHGTSGVWREHAASHSLVGPDNKPVKAPDPLTFKELEQQDSFAVVLRSHPSDGRPLAYEPYTL YKGAAKIADGVTDEHGQLIIANHQKGTSSYTVKLHNGHEIEVPVMEGGLSDDDQLAAQGWRAVDGDPESRQRHAQG
Sequences:
>Translated_956_residues MLRAFVGALDQNNRAIRFHWGRHQDALAHVLVPQSIDLTEGLCVGIEGHLTCLSSRPDLPLSAFLGLPLSVQLMTDRGKP YPINGIITDVRAGQSDGSLTCVQLTLRDALSILDQRINSRTFRSMSVPDILETLLHEWQQRSSALAQAFDFELVLDRNQY PKREQTRQAGESDAAFIRRMCRRDGIFWYTRAGKHDGAAADTPVHTLVFCDDPTKLPQAAAGHVPYHRGTQSRERDSVTL WSAARALTPGSVRRASWDYKTGRIAQSEQETIVDQGEAGNDLAKLLADSVIDVPHAADSDADHERLAKARILAHEHRAEC VHASSDVRDVSPGFWFTLAGHPEVDTRPEEQRQFVVTSLHHRATNNFSKALDERAQVLFAASRWSFDALPVEEGAGVRYE NTFVCVRRGVPLTPAYDPRVDLPPVHPFTAKVVGQDGEEVHCDELGRIKVQILGLRADDHAHAQGAGTSGTERDSAWVRW VSPWAGPNYGMDMLPRAGMEVLIDHLHGDPDKMVVIGVLHGGPNMPTTFSHTGSLPGNRYLSGIKTKEVKADRYNQLRFD DTPGQISSQLASEHTYTQLNLGYLTEPRNDGKGAPRGDGLEARTDAQAVIRAAKGVYVTAQQQGRAEGKMLERTALQTLI EQLQELVRNLGDASAANDADNTDLARIEKITSQIKGWDAGSNVDQGGGGSGGAPMVAIEGPAGVTVVSQDAMVLGAQTNI DAVSAGNTQISVGRRLLMRVGDWMSAFAAKGMTLVTADGKLRIEAHKEDVVVKAAKRIILEAGEEIVFRSPKVNTQASDE ASINGGSSYSQWNGGGVVHGTSGVWREHAASHSLVGPDNKPVKAPDPLTFKELEQQDSFAVVLRSHPSDGRPLAYEPYTL YKGAAKIADGVTDEHGQLIIANHQKGTSSYTVKLHNGHEIEVPVMEGGLSDDDQLAAQGWRAVDGDPESRQRHAQG >Mature_956_residues MLRAFVGALDQNNRAIRFHWGRHQDALAHVLVPQSIDLTEGLCVGIEGHLTCLSSRPDLPLSAFLGLPLSVQLMTDRGKP YPINGIITDVRAGQSDGSLTCVQLTLRDALSILDQRINSRTFRSMSVPDILETLLHEWQQRSSALAQAFDFELVLDRNQY PKREQTRQAGESDAAFIRRMCRRDGIFWYTRAGKHDGAAADTPVHTLVFCDDPTKLPQAAAGHVPYHRGTQSRERDSVTL WSAARALTPGSVRRASWDYKTGRIAQSEQETIVDQGEAGNDLAKLLADSVIDVPHAADSDADHERLAKARILAHEHRAEC VHASSDVRDVSPGFWFTLAGHPEVDTRPEEQRQFVVTSLHHRATNNFSKALDERAQVLFAASRWSFDALPVEEGAGVRYE NTFVCVRRGVPLTPAYDPRVDLPPVHPFTAKVVGQDGEEVHCDELGRIKVQILGLRADDHAHAQGAGTSGTERDSAWVRW VSPWAGPNYGMDMLPRAGMEVLIDHLHGDPDKMVVIGVLHGGPNMPTTFSHTGSLPGNRYLSGIKTKEVKADRYNQLRFD DTPGQISSQLASEHTYTQLNLGYLTEPRNDGKGAPRGDGLEARTDAQAVIRAAKGVYVTAQQQGRAEGKMLERTALQTLI EQLQELVRNLGDASAANDADNTDLARIEKITSQIKGWDAGSNVDQGGGGSGGAPMVAIEGPAGVTVVSQDAMVLGAQTNI DAVSAGNTQISVGRRLLMRVGDWMSAFAAKGMTLVTADGKLRIEAHKEDVVVKAAKRIILEAGEEIVFRSPKVNTQASDE ASINGGSSYSQWNGGGVVHGTSGVWREHAASHSLVGPDNKPVKAPDPLTFKELEQQDSFAVVLRSHPSDGRPLAYEPYTL YKGAAKIADGVTDEHGQLIIANHQKGTSSYTVKLHNGHEIEVPVMEGGLSDDDQLAAQGWRAVDGDPESRQRHAQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 103977; Mature: 103977
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRAFVGALDQNNRAIRFHWGRHQDALAHVLVPQSIDLTEGLCVGIEGHLTCLSSRPDLP CCCHHHHHHCCCCCEEEEECCCCHHHHHEEECCCCCCCCCCEEEECCCEEEEECCCCCCC LSAFLGLPLSVQLMTDRGKPYPINGIITDVRAGQSDGSLTCVQLTLRDALSILDQRINSR HHHHHCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHH TFRSMSVPDILETLLHEWQQRSSALAQAFDFELVLDRNQYPKREQTRQAGESDAAFIRRM HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHCCCCHHHHHHHH CRRDGIFWYTRAGKHDGAAADTPVHTLVFCDDPTKLPQAAAGHVPYHRGTQSRERDSVTL HHHCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCEEE WSAARALTPGSVRRASWDYKTGRIAQSEQETIVDQGEAGNDLAKLLADSVIDVPHAADSD EHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCC ADHERLAKARILAHEHRAECVHASSDVRDVSPGFWFTLAGHPEVDTRPEEQRQFVVTSLH CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH HRATNNFSKALDERAQVLFAASRWSFDALPVEEGAGVRYENTFVCVRRGVPLTPAYDPRV HHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCEECCEEEEEECCCCCCCCCCCCC DLPPVHPFTAKVVGQDGEEVHCDELGRIKVQILGLRADDHAHAQGAGTSGTERDSAWVRW CCCCCCCCCCEEECCCCCEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEE VSPWAGPNYGMDMLPRAGMEVLIDHLHGDPDKMVVIGVLHGGPNMPTTFSHTGSLPGNRY ECCCCCCCCCCHHCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHH LSGIKTKEVKADRYNQLRFDDTPGQISSQLASEHTYTQLNLGYLTEPRNDGKGAPRGDGL HCCCCHHHCCCCCCCCCEECCCCHHHHHHHHHCCCEEEEEECEEECCCCCCCCCCCCCCC EARTDAQAVIRAAKGVYVTAQQQGRAEGKMLERTALQTLIEQLQELVRNLGDASAANDAD CCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC NTDLARIEKITSQIKGWDAGSNVDQGGGGSGGAPMVAIEGPAGVTVVSQDAMVLGAQTNI CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCEEEEECCCCC DAVSAGNTQISVGRRLLMRVGDWMSAFAAKGMTLVTADGKLRIEAHKEDVVVKAAKRIIL CEEECCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEEECCHHHHHHHHHHHHH EAGEEIVFRSPKVNTQASDEASINGGSSYSQWNGGGVVHGTSGVWREHAASHSLVGPDNK HCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCC PVKAPDPLTFKELEQQDSFAVVLRSHPSDGRPLAYEPYTLYKGAAKIADGVTDEHGQLII CCCCCCCCCHHHHHCCCCEEEEEECCCCCCCCEEECCHHHHCCHHHHHCCCCCCCCEEEE ANHQKGTSSYTVKLHNGHEIEVPVMEGGLSDDDQLAAQGWRAVDGDPESRQRHAQG EECCCCCCEEEEEEECCCEEEEEEECCCCCCCHHHHHCCCCCCCCCHHHHHHCCCC >Mature Secondary Structure MLRAFVGALDQNNRAIRFHWGRHQDALAHVLVPQSIDLTEGLCVGIEGHLTCLSSRPDLP CCCHHHHHHCCCCCEEEEECCCCHHHHHEEECCCCCCCCCCEEEECCCEEEEECCCCCCC LSAFLGLPLSVQLMTDRGKPYPINGIITDVRAGQSDGSLTCVQLTLRDALSILDQRINSR HHHHHCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHH TFRSMSVPDILETLLHEWQQRSSALAQAFDFELVLDRNQYPKREQTRQAGESDAAFIRRM HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHCCCCHHHHHHHH CRRDGIFWYTRAGKHDGAAADTPVHTLVFCDDPTKLPQAAAGHVPYHRGTQSRERDSVTL HHHCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCEEE WSAARALTPGSVRRASWDYKTGRIAQSEQETIVDQGEAGNDLAKLLADSVIDVPHAADSD EHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCC ADHERLAKARILAHEHRAECVHASSDVRDVSPGFWFTLAGHPEVDTRPEEQRQFVVTSLH CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH HRATNNFSKALDERAQVLFAASRWSFDALPVEEGAGVRYENTFVCVRRGVPLTPAYDPRV HHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCEECCEEEEEECCCCCCCCCCCCC DLPPVHPFTAKVVGQDGEEVHCDELGRIKVQILGLRADDHAHAQGAGTSGTERDSAWVRW CCCCCCCCCCEEECCCCCEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEE VSPWAGPNYGMDMLPRAGMEVLIDHLHGDPDKMVVIGVLHGGPNMPTTFSHTGSLPGNRY ECCCCCCCCCCHHCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHH LSGIKTKEVKADRYNQLRFDDTPGQISSQLASEHTYTQLNLGYLTEPRNDGKGAPRGDGL HCCCCHHHCCCCCCCCCEECCCCHHHHHHHHHCCCEEEEEECEEECCCCCCCCCCCCCCC EARTDAQAVIRAAKGVYVTAQQQGRAEGKMLERTALQTLIEQLQELVRNLGDASAANDAD CCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC NTDLARIEKITSQIKGWDAGSNVDQGGGGSGGAPMVAIEGPAGVTVVSQDAMVLGAQTNI CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCEEEEECCCCC DAVSAGNTQISVGRRLLMRVGDWMSAFAAKGMTLVTADGKLRIEAHKEDVVVKAAKRIIL CEEECCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEEECCHHHHHHHHHHHHH EAGEEIVFRSPKVNTQASDEASINGGSSYSQWNGGGVVHGTSGVWREHAASHSLVGPDNK HCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCC PVKAPDPLTFKELEQQDSFAVVLRSHPSDGRPLAYEPYTLYKGAAKIADGVTDEHGQLII CCCCCCCCCHHHHHCCCCEEEEEECCCCCCCCEEECCHHHHCCHHHHHCCCCCCCCEEEE ANHQKGTSSYTVKLHNGHEIEVPVMEGGLSDDDQLAAQGWRAVDGDPESRQRHAQG EECCCCCCEEEEEEECCCEEEEEEECCCCCCCHHHHHCCCCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA