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The map label for this gene is ycaN [H]

Identifier: 107022866

GI number: 107022866

Start: 1446727

End: 1447629

Strand: Reverse

Name: ycaN [H]

Synonym: Bcen_1314

Alternate gene names: 107022866

Gene position: 1447629-1446727 (Counterclockwise)

Preceding gene: 107022868

Following gene: 107022861

Centisome position: 43.94

GC content: 70.76

Gene sequence:

>903_bases
ATGCTCAACCGCCTCGACATCCTGAAGATCTTTGCCGCGGCCGCCGCGGCGCCGACGTTTCGCGAGGCGGCCGCGCGGCT
CGGCGTGTCGCCGCAGGTCGTCACGCGCGCGGTGCGCGAACTGGAGGAGATGCTCGGCGAAACGCTGTTTCACCGGACGA
CCCGCAGCATCCGGATCACCGCGTTCGGCCAGTCGTTCGCGCGCGAGGTGCAGGGCGCGCTGGCCGTGGTCGACGGGCTG
TTCGGGCCCGCGACCGGCCAGCGCGACGAGCCGGTCGGCGTCGTCCGGATCACCGCGCCGTCGGGCATGGGGCGGCATTA
CGTGCAGCCGATCCTCACCGGCCTCATGCAGCGATATCCGGGGCTCGTGCCCGATCTGCGGCTGTCGGACGTGCCGTCGC
CGGTGGTCGACGAGCAGATCGACATCGGCGTGCGTGTCGGCGCGATCGGCGACAACCGCTTCGTCGCGCGCATGGTCGGG
CCGCTGCCGATGTGGGTGGTGGCCGCGCCGTCGCTGATCCGGCGGCTGGGCGAGCCGAAAAACCGCAAGGCACTCGAAGC
GATGCCGGTGACGTGCCTGATCGATCGTGCAAGCGGGCGGCCGTGGCCGTGGATGTTTCGCGGCGAGCAGCAGTTCGTGC
CGTCGTCGCCGGCTTACCTGACGGACGACACCGAGGTGGAGATCGAGGCCGTGTGCGCGGGGGTGGGAGTCGGCCAGTGT
TCGGAATATCTGGTGCGGCCGTACGTCAGGAAGGGGCGCCTCGTGCGGGTGTTGCCGAGCCTCGAGCCCGAGCCGTGGAA
GCTGCACGTCTATCGGCCGCGGCGCGGGCCGATGCCGCGTCGTATCCGGGTGGTGTACGACGAACTGGTGGCGAAGCTCG
CGGAGGCGACGTGGCGGGAGTAG

Upstream 100 bases:

>100_bases
TGGTCGTTCGACGTCGACAAAAAAATGGAACAATGGCGCATTCAGAATTCCTTTTTGGGGAATTAAAATCGCTTTTTCGC
GAGCATCATAAAGGCTTCCC

Downstream 100 bases:

>100_bases
GGATCGTCGCGGCTGCGCCGTGGGCCGACACGCTGCGGCGTCATCATGGTGCCGACGCACCCGTATCGTTGATCCCGGGC
GACTTTGGGCCGCCGTGGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MLNRLDILKIFAAAAAAPTFREAAARLGVSPQVVTRAVRELEEMLGETLFHRTTRSIRITAFGQSFAREVQGALAVVDGL
FGPATGQRDEPVGVVRITAPSGMGRHYVQPILTGLMQRYPGLVPDLRLSDVPSPVVDEQIDIGVRVGAIGDNRFVARMVG
PLPMWVVAAPSLIRRLGEPKNRKALEAMPVTCLIDRASGRPWPWMFRGEQQFVPSSPAYLTDDTEVEIEAVCAGVGVGQC
SEYLVRPYVRKGRLVRVLPSLEPEPWKLHVYRPRRGPMPRRIRVVYDELVAKLAEATWRE

Sequences:

>Translated_300_residues
MLNRLDILKIFAAAAAAPTFREAAARLGVSPQVVTRAVRELEEMLGETLFHRTTRSIRITAFGQSFAREVQGALAVVDGL
FGPATGQRDEPVGVVRITAPSGMGRHYVQPILTGLMQRYPGLVPDLRLSDVPSPVVDEQIDIGVRVGAIGDNRFVARMVG
PLPMWVVAAPSLIRRLGEPKNRKALEAMPVTCLIDRASGRPWPWMFRGEQQFVPSSPAYLTDDTEVEIEAVCAGVGVGQC
SEYLVRPYVRKGRLVRVLPSLEPEPWKLHVYRPRRGPMPRRIRVVYDELVAKLAEATWRE
>Mature_300_residues
MLNRLDILKIFAAAAAAPTFREAAARLGVSPQVVTRAVRELEEMLGETLFHRTTRSIRITAFGQSFAREVQGALAVVDGL
FGPATGQRDEPVGVVRITAPSGMGRHYVQPILTGLMQRYPGLVPDLRLSDVPSPVVDEQIDIGVRVGAIGDNRFVARMVG
PLPMWVVAAPSLIRRLGEPKNRKALEAMPVTCLIDRASGRPWPWMFRGEQQFVPSSPAYLTDDTEVEIEAVCAGVGVGQC
SEYLVRPYVRKGRLVRVLPSLEPEPWKLHVYRPRRGPMPRRIRVVYDELVAKLAEATWRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=279, Percent_Identity=28.673835125448, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI145693193, Length=309, Percent_Identity=28.1553398058252, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1786401, Length=251, Percent_Identity=26.6932270916335, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=26.643598615917, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789639, Length=307, Percent_Identity=24.1042345276873, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI87081978, Length=273, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1787589, Length=271, Percent_Identity=27.3062730627306, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1786448, Length=254, Percent_Identity=26.7716535433071, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786713, Length=270, Percent_Identity=25.5555555555556, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33295; Mature: 33295

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRLDILKIFAAAAAAPTFREAAARLGVSPQVVTRAVRELEEMLGETLFHRTTRSIRIT
CCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
AFGQSFAREVQGALAVVDGLFGPATGQRDEPVGVVRITAPSGMGRHYVQPILTGLMQRYP
ECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCC
GLVPDLRLSDVPSPVVDEQIDIGVRVGAIGDNRFVARMVGPLPMWVVAAPSLIRRLGEPK
CCCCCCCCCCCCCCHHCCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCC
NRKALEAMPVTCLIDRASGRPWPWMFRGEQQFVPSSPAYLTDDTEVEIEAVCAGVGVGQC
CCCHHHHCCEEEEEECCCCCCCCEEECCCCCCCCCCCCEECCCCCEEEEHHHHCCCHHHH
SEYLVRPYVRKGRLVRVLPSLEPEPWKLHVYRPRRGPMPRRIRVVYDELVAKLAEATWRE
HHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLNRLDILKIFAAAAAAPTFREAAARLGVSPQVVTRAVRELEEMLGETLFHRTTRSIRIT
CCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
AFGQSFAREVQGALAVVDGLFGPATGQRDEPVGVVRITAPSGMGRHYVQPILTGLMQRYP
ECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCC
GLVPDLRLSDVPSPVVDEQIDIGVRVGAIGDNRFVARMVGPLPMWVVAAPSLIRRLGEPK
CCCCCCCCCCCCCCHHCCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCC
NRKALEAMPVTCLIDRASGRPWPWMFRGEQQFVPSSPAYLTDDTEVEIEAVCAGVGVGQC
CCCHHHHCCEEEEEECCCCCCCCEEECCCCCCCCCCCCEECCCCCEEEEHHHHCCCHHHH
SEYLVRPYVRKGRLVRVLPSLEPEPWKLHVYRPRRGPMPRRIRVVYDELVAKLAEATWRE
HHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]