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The map label for this gene is yddE [C]

Identifier: 107022861

GI number: 107022861

Start: 1440351

End: 1441223

Strand: Reverse

Name: yddE [C]

Synonym: Bcen_1309

Alternate gene names: 107022861

Gene position: 1441223-1440351 (Counterclockwise)

Preceding gene: 107022866

Following gene: 107022860

Centisome position: 43.75

GC content: 64.6

Gene sequence:

>873_bases
ATGAGCATCGTACAACGTGTGCGGCTTGTACGGGTATTTTCCATCACCGACGAGGGCGGCAATCCGGCCCCGGTTGTGCT
CGACGCGAACGGCTGGTCCGACGCGCAAATGAAAGAGGTGGCCCGCGCGTATGGTCTGGAAAGCGGGTTTGTGATGCGCG
CCGTCGATCCGCACCATGATTTTCGCTTCCGCTTTTTTGTGCCCAACCACGAGATGGAGATGTGCGGACACGCGACGCTG
GGCGCATTGTGGCTGCTGCGTCACACGGGCGCATGGCGCACGAACACGGCGCTGATTGAAACGCTGAGCGGCAGCATCGA
AGCGCGGTACGACGCGTCCGACGCGCGGATCGAAGTCAGCCAGCCGGCGGGACGCGTCGAGCCGGTTGTCGACGCGGCGC
TCATTGCCAGGACACTCGATGCATTGAACCTCGATGCGGGCGACCTGCTGCCGCTCGACATCGTCAACGCAACGACGAGC
CGCACCAAAACGCTGGTGCCGGTCCGCACGACCTCACGGCTGAATGCGATCATGCCGAAACTCGACACAATCGAAGCGCT
ATGCGACGCGCTGTCGTCGACCGGTCTGTATCCGTTTGCGCTCGATGCCAATGCACCGCGCGTGTTCGACGCACGGCAAT
TTCCGCGCGCGTCCGGCTATTCGGAAGACGCGGCGACCGGCATCGCAGCGGCAGCGCTCCTGTACGGCGCGCATCGCCAT
GGGCTCGTCACCGGAGCGGGACGCGGCATCGTCGTGCGTCAGGGTGCGGCGATGGGACGCCCGTCCGCGATCACGGTGAA
CTTTCGCGATCCGGCCGATGCAAGCAGCGGTTGCTGGCTCAGTGGCCCGGTTGGTCTGATGGACGAGGCCTGA

Upstream 100 bases:

>100_bases
AAAAAACGCAGGCCGTGCATGCTGCGAGGGACGGCGGACTGGCCGCCGGCTTCGCAAAAGGCGGCACACCGATAGGCGGA
GTTAATTAGGGAGCAAGCGC

Downstream 100 bases:

>100_bases
GTCATGTTGCTGGGCACACTCGAAGTCGATTTGTCGACACGCTCGTTACGACGTGATGGGAAGGCTATCCATGTCGGTTC
GCGTGCATTTGACGTGCTCG

Product: phenazine biosynthesis PhzC/PhzF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MSIVQRVRLVRVFSITDEGGNPAPVVLDANGWSDAQMKEVARAYGLESGFVMRAVDPHHDFRFRFFVPNHEMEMCGHATL
GALWLLRHTGAWRTNTALIETLSGSIEARYDASDARIEVSQPAGRVEPVVDAALIARTLDALNLDAGDLLPLDIVNATTS
RTKTLVPVRTTSRLNAIMPKLDTIEALCDALSSTGLYPFALDANAPRVFDARQFPRASGYSEDAATGIAAAALLYGAHRH
GLVTGAGRGIVVRQGAAMGRPSAITVNFRDPADASSGCWLSGPVGLMDEA

Sequences:

>Translated_290_residues
MSIVQRVRLVRVFSITDEGGNPAPVVLDANGWSDAQMKEVARAYGLESGFVMRAVDPHHDFRFRFFVPNHEMEMCGHATL
GALWLLRHTGAWRTNTALIETLSGSIEARYDASDARIEVSQPAGRVEPVVDAALIARTLDALNLDAGDLLPLDIVNATTS
RTKTLVPVRTTSRLNAIMPKLDTIEALCDALSSTGLYPFALDANAPRVFDARQFPRASGYSEDAATGIAAAALLYGAHRH
GLVTGAGRGIVVRQGAAMGRPSAITVNFRDPADASSGCWLSGPVGLMDEA
>Mature_289_residues
SIVQRVRLVRVFSITDEGGNPAPVVLDANGWSDAQMKEVARAYGLESGFVMRAVDPHHDFRFRFFVPNHEMEMCGHATLG
ALWLLRHTGAWRTNTALIETLSGSIEARYDASDARIEVSQPAGRVEPVVDAALIARTLDALNLDAGDLLPLDIVNATTSR
TKTLVPVRTTSRLNAIMPKLDTIEALCDALSSTGLYPFALDANAPRVFDARQFPRASGYSEDAATGIAAAALLYGAHRHG
LVTGAGRGIVVRQGAAMGRPSAITVNFRDPADASSGCWLSGPVGLMDEA

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=277, Percent_Identity=31.7689530685921, Blast_Score=111, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31027; Mature: 30895

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIVQRVRLVRVFSITDEGGNPAPVVLDANGWSDAQMKEVARAYGLESGFVMRAVDPHHD
CCHHHHHHEEEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
FRFRFFVPNHEMEMCGHATLGALWLLRHTGAWRTNTALIETLSGSIEARYDASDARIEVS
EEEEEEECCCCHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEECCCCCEEEEC
QPAGRVEPVVDAALIARTLDALNLDAGDLLPLDIVNATTSRTKTLVPVRTTSRLNAIMPK
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEEECHHHHHHHHCC
LDTIEALCDALSSTGLYPFALDANAPRVFDARQFPRASGYSEDAATGIAAAALLYGAHRH
HHHHHHHHHHHHHCCCCEEEECCCCCCEECHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC
GLVTGAGRGIVVRQGAAMGRPSAITVNFRDPADASSGCWLSGPVGLMDEA
CEEEECCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC
>Mature Secondary Structure 
SIVQRVRLVRVFSITDEGGNPAPVVLDANGWSDAQMKEVARAYGLESGFVMRAVDPHHD
CHHHHHHEEEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
FRFRFFVPNHEMEMCGHATLGALWLLRHTGAWRTNTALIETLSGSIEARYDASDARIEVS
EEEEEEECCCCHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEECCCCCEEEEC
QPAGRVEPVVDAALIARTLDALNLDAGDLLPLDIVNATTSRTKTLVPVRTTSRLNAIMPK
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEEECHHHHHHHHCC
LDTIEALCDALSSTGLYPFALDANAPRVFDARQFPRASGYSEDAATGIAAAALLYGAHRH
HHHHHHHHHHHHHCCCCEEEECCCCCCEECHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC
GLVTGAGRGIVVRQGAAMGRPSAITVNFRDPADASSGCWLSGPVGLMDEA
CEEEECCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]