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The map label for this gene is xerD [H]

Identifier: 107022780

GI number: 107022780

Start: 1350978

End: 1352501

Strand: Reverse

Name: xerD [H]

Synonym: Bcen_1227

Alternate gene names: 107022780

Gene position: 1352501-1350978 (Counterclockwise)

Preceding gene: 107022781

Following gene: 107022779

Centisome position: 41.05

GC content: 68.37

Gene sequence:

>1524_bases
ATGCGCCGGCAGATCGCCGATTTCGCCCTGAGCCGTCATCGCGCCGATTTGGCCCGGCCGTTCCTGTGTGCGGCCGGCGA
ACGGAGCCGTCACCGCAAGGCGGCGATCCAGGCGCTGGACACACTGCCGTCGCTGCCGGTCCCGCACCCGCAGGTGAGCG
ATCCAGTCGATGCCTGGCTGTCGCCTCGTGTTGTCGCAGTGCTGCACCGGCACGGCATCCGGACGCTGGCCGATCTGACC
GTGCGCATTCCCCGTCGCCGGCGGTGGTGGCTTGTGATTCCCGGACTCGGTGAACGAAGCGCGCGCTGGATCGAAGGCTT
CTTTGCCGCTCATCCGGCGCTCACTGAGCGGGCTCGCGCACTGGTCGCGGTGGCGACGCCAGAACCCGTGGTGCCGTGGG
AACGCATCCACGTACCTCATGAAGTCGATGGGTCGCGCGGCACTTTCCGCGCGCCGAAGCGAATGTGCGCGCTCGAGGCC
GATAATGACTATCAGGCGATCAACGCGTGGCTCGAACGATACGAAGCTGCTGAAACACGACGCGCCTATCGCCGGGAAGC
CGAACGCCTGATGCTCTGGGCTATCGTCGAGCGCGGCAAGGCGTTGTCCTCACTCACGAGCGAGGATGCGACCGCCTATC
GCGCCTTCCTACGCCATCCAACGCCGCGTGCCCGCTGGGTCGCGCCGGCGCGGCCGCGACCTTCGCCCGAGTGGCGTCCG
TTCACGGGCGCGCTGTCGCCGGATTCGATCGCCTACACCCTGTCGGTGCTCAGTGCGATGTTCCGCTGGCTGATCGAGCA
GCGCTACGTACTGGCGAATTCGTTCGCGGGTCTCAGGGTGCGCGGGGCGCAGCGCAACGGGGAACTCGACATCTCGAGGG
CCTTTACGGCCGGCGAGTGGGAACTGGTCCGAACCATCGCCGACGGGCTCGAACGGTCGCACGGCTGGACGGTACCGGCC
GCACAGCGTCTGCGCTTCGTGCTCGACTTTGGTTACGCGACCGGCCTGCGCGCGAGCGAGCTGGTCGGCGTCACGCTCGG
CGGCATCGAAACCGGCGCGCGCGGCGAGCGTTGGCTGCATCTCACCGGCAAGGGCGCGAAGGCCGGCAAGGTGGTGTTGC
CGCCGCTGGCAACGCACGCGCTGGACCAATATCTCGTTCAGCGTGGACTACCGGTAACCTCAGCCCGCTGGCAGCCGGAC
ACGCCGCTGCTCGGCCATCTCGATGCGCCCGGCGGCATCACCACGCCGCGCCTAAGGGAGGTGCTGCGCCGGTTCTTCCA
TGCCGCCGCCGACGCCATCGAGGCGGACCACCCGGCGCTCGCCGGCAAGCTGCGGCGCGCGACCCCGCACTGGATGCGCC
ATACGCACGCGACACACGCACTTGCCAACGGCGCGACGCTTACCACCGTGCGCGATAACCTGCGTCACGCGTCAATCACG
ACCACCTCGATCTACCTGGACGACGACGAAGTCCAGCGGACCCGGCAGATCGAGCGGATTTTTGCGCGACGGCCGCCGGC
ATGA

Upstream 100 bases:

>100_bases
CGTGCGTGGTATGCGGGCGTTGGCTCGCGTGAGGCGATTGAGCGTTATTGTCCGCACGCGCTTGGAGGGGGGGCAGTCGA
CGCGCGGTGTGATCGGCCGG

Downstream 100 bases:

>100_bases
GCACCGTCCACGAGACCATCTATCCGGTGCTGCCTGCCGAGCCGGGCGCGGCGGAGCTGAAAGCTGCGTTCACGCCGAGC
ACCGCGGAAATCCGATTCGT

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 507; Mature: 507

Protein sequence:

>507_residues
MRRQIADFALSRHRADLARPFLCAAGERSRHRKAAIQALDTLPSLPVPHPQVSDPVDAWLSPRVVAVLHRHGIRTLADLT
VRIPRRRRWWLVIPGLGERSARWIEGFFAAHPALTERARALVAVATPEPVVPWERIHVPHEVDGSRGTFRAPKRMCALEA
DNDYQAINAWLERYEAAETRRAYRREAERLMLWAIVERGKALSSLTSEDATAYRAFLRHPTPRARWVAPARPRPSPEWRP
FTGALSPDSIAYTLSVLSAMFRWLIEQRYVLANSFAGLRVRGAQRNGELDISRAFTAGEWELVRTIADGLERSHGWTVPA
AQRLRFVLDFGYATGLRASELVGVTLGGIETGARGERWLHLTGKGAKAGKVVLPPLATHALDQYLVQRGLPVTSARWQPD
TPLLGHLDAPGGITTPRLREVLRRFFHAAADAIEADHPALAGKLRRATPHWMRHTHATHALANGATLTTVRDNLRHASIT
TTSIYLDDDEVQRTRQIERIFARRPPA

Sequences:

>Translated_507_residues
MRRQIADFALSRHRADLARPFLCAAGERSRHRKAAIQALDTLPSLPVPHPQVSDPVDAWLSPRVVAVLHRHGIRTLADLT
VRIPRRRRWWLVIPGLGERSARWIEGFFAAHPALTERARALVAVATPEPVVPWERIHVPHEVDGSRGTFRAPKRMCALEA
DNDYQAINAWLERYEAAETRRAYRREAERLMLWAIVERGKALSSLTSEDATAYRAFLRHPTPRARWVAPARPRPSPEWRP
FTGALSPDSIAYTLSVLSAMFRWLIEQRYVLANSFAGLRVRGAQRNGELDISRAFTAGEWELVRTIADGLERSHGWTVPA
AQRLRFVLDFGYATGLRASELVGVTLGGIETGARGERWLHLTGKGAKAGKVVLPPLATHALDQYLVQRGLPVTSARWQPD
TPLLGHLDAPGGITTPRLREVLRRFFHAAADAIEADHPALAGKLRRATPHWMRHTHATHALANGATLTTVRDNLRHASIT
TTSIYLDDDEVQRTRQIERIFARRPPA
>Mature_507_residues
MRRQIADFALSRHRADLARPFLCAAGERSRHRKAAIQALDTLPSLPVPHPQVSDPVDAWLSPRVVAVLHRHGIRTLADLT
VRIPRRRRWWLVIPGLGERSARWIEGFFAAHPALTERARALVAVATPEPVVPWERIHVPHEVDGSRGTFRAPKRMCALEA
DNDYQAINAWLERYEAAETRRAYRREAERLMLWAIVERGKALSSLTSEDATAYRAFLRHPTPRARWVAPARPRPSPEWRP
FTGALSPDSIAYTLSVLSAMFRWLIEQRYVLANSFAGLRVRGAQRNGELDISRAFTAGEWELVRTIADGLERSHGWTVPA
AQRLRFVLDFGYATGLRASELVGVTLGGIETGARGERWLHLTGKGAKAGKVVLPPLATHALDQYLVQRGLPVTSARWQPD
TPLLGHLDAPGGITTPRLREVLRRFFHAAADAIEADHPALAGKLRRATPHWMRHTHATHALANGATLTTVRDNLRHASIT
TTSIYLDDDEVQRTRQIERIFARRPPA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 56912; Mature: 56912

Theoretical pI: Translated: 11.46; Mature: 11.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRQIADFALSRHRADLARPFLCAAGERSRHRKAAIQALDTLPSLPVPHPQVSDPVDAWL
CCCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHC
SPRVVAVLHRHGIRTLADLTVRIPRRRRWWLVIPGLGERSARWIEGFFAAHPALTERARA
CCHHHHHHHHHCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCHHHHHHHHE
LVAVATPEPVVPWERIHVPHEVDGSRGTFRAPKRMCALEADNDYQAINAWLERYEAAETR
EEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHHHHH
RAYRREAERLMLWAIVERGKALSSLTSEDATAYRAFLRHPTPRARWVAPARPRPSPEWRP
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
FTGALSPDSIAYTLSVLSAMFRWLIEQRYVLANSFAGLRVRGAQRNGELDISRAFTAGEW
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEECCCCCCHH
ELVRTIADGLERSHGWTVPAAQRLRFVLDFGYATGLRASELVGVTLGGIETGARGERWLH
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHEEEEEECCCCCCCCCCEEEE
LTGKGAKAGKVVLPPLATHALDQYLVQRGLPVTSARWQPDTPLLGHLDAPGGITTPRLRE
EECCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHH
VLRRFFHAAADAIEADHPALAGKLRRATPHWMRHTHATHALANGATLTTVRDNLRHASIT
HHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEHHHHCCCCCEEE
TTSIYLDDDEVQRTRQIERIFARRPPA
EEEEEECCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRRQIADFALSRHRADLARPFLCAAGERSRHRKAAIQALDTLPSLPVPHPQVSDPVDAWL
CCCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHC
SPRVVAVLHRHGIRTLADLTVRIPRRRRWWLVIPGLGERSARWIEGFFAAHPALTERARA
CCHHHHHHHHHCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCHHHHHHHHE
LVAVATPEPVVPWERIHVPHEVDGSRGTFRAPKRMCALEADNDYQAINAWLERYEAAETR
EEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHHHHH
RAYRREAERLMLWAIVERGKALSSLTSEDATAYRAFLRHPTPRARWVAPARPRPSPEWRP
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
FTGALSPDSIAYTLSVLSAMFRWLIEQRYVLANSFAGLRVRGAQRNGELDISRAFTAGEW
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEECCCCCCHH
ELVRTIADGLERSHGWTVPAAQRLRFVLDFGYATGLRASELVGVTLGGIETGARGERWLH
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHEEEEEECCCCCCCCCCEEEE
LTGKGAKAGKVVLPPLATHALDQYLVQRGLPVTSARWQPDTPLLGHLDAPGGITTPRLRE
EECCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHH
VLRRFFHAAADAIEADHPALAGKLRRATPHWMRHTHATHALANGATLTTVRDNLRHASIT
HHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEHHHHCCCCCEEE
TTSIYLDDDEVQRTRQIERIFARRPPA
EEEEEECCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]