| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is 107021564
Identifier: 107021564
GI number: 107021564
Start: 1408
End: 2622
Strand: Reverse
Name: 107021564
Synonym: Bcen_0002
Alternate gene names: NA
Gene position: 2622-1408 (Counterclockwise)
Preceding gene: 107021565
Following gene: 107021563
Centisome position: 0.08
GC content: 65.68
Gene sequence:
>1215_bases ATGAAGTCGGCGTTCTCATTCCTGCCCAACTGGCCGCTCGCGCCGGATGCCGTGTTCTGGGCCGGGCTCGCACTGTTTGC AGCCGGCCTGTGCGGCGAGCTGTGCTATCGCGCGTGGCGCTTGCCGCGCATCACCGGCTATGCCGTGATCGGCCTGATCG CCGGTTCGTTCGGATTCGGCGTGATCGACACGAGCACCGACGAAACCTCGCGACTGTTGATGGACGTCGCGCTCGGTCTG CTGCTGTTCGAGCTCGGCAGCCGCCTCGACCTGCGCTGGATTCGGCGCAATCCGTGGCTCGTCGCGTCGAGCCTCGCGGA AGCCACGCTAACCTTCGTGCTCGTGCTGTTCGTGATGCTCGCGCTCGGCGTATCGGGGATGGTCGCCCTCGTGCTGTCGG CGATCGCGATCGCGACGTCGCCGTCGATGGTGATCCAGCTCAAGACCGAACTGCGTGCGGAAGGGCAGGTGTCGCAGCGC CTGATCACGCTCACCGCGCTCAACAGCGTGTATGCGATCGTGCTGACCAAGCTCGTGACGAGCTGGCTGCACCAGGAAGC GTACGGCAACGTTTTCGCGACGATCCTGCAGCCGCTCTACCTGCTCGCCGGTTCGTTCATCGTCGCGTATCTGGTCGCGC GTTCGTGCAATTACCTGTTCCGTCACATGACCGCGACGATGCGCGACGAGCATTCATTCGTCGCGCTGTTCGGGCTCGTG ATGCTCGCGATCGCCGTCGCGCAGGCGCTGAAGCTGTCGACGCTGCTCACGCTGCTGCTCGCCGGCATCATCGTGAAGAA CCTCGAAGCGCGGCCGCAGCTGTGGCCCGAGCACTTCGGCACGGCCGGCTGGCTGCTGACGGTGGTGCTGTTCGTGCTGA CGCTCACGTCGTTCACGTGGGGCGACATCGCGCTCGGCGGGCTGCTCGCGATCGTGCTGATCGTCACGCGGCTCGTCGCG AAGCTGGCCGGCGTCGTCGCGTTCGCGAAGCCGAGCGGCCTCGGGATGAAGCAGGGCGTCGCGCTCGGCATCGCGCTCAC GCCGATGTCCGCGCTGTCGTACCTGCTCGTCGACGATACCTACCAGCTCTATCCCAATTTCGACCCGCACCTGCGCGCGA TCGTGATGTGCTCGATCGTGATCCTGCAGCTCGTCAGCCCGTTCGTCGTCTATCGCTGCCTGTCGGCGGTCGGCGAACGC AGCGACAGCAACTGA
Upstream 100 bases:
>100_bases ACAACAATCACATTCGGGGCGATACCCAGCCGGCGCGCATCCATTCCTGTCGCTTGACCCCGCGTCGCTGGCGGTTGCTT CCAAAGGAGAAGTCACCACG
Downstream 100 bases:
>100_bases TTCCGGAACCTGCCATGGCACTCGAAACCTTCGTCAATTCCGAACCGTTCACGTTCGGCGTCGAACTGGAGATCCAGGTC GTCAACACGCACAACTACGA
Product: sodium/hydrogen exchanger
Products: NA
Alternate protein names: Na/H+ Antiporter; Na+/H+ Antiporters; Transmembrane Protein; Sodium/Hydrogen Exchanger Family Protein; Na/H Antiporter
Number of amino acids: Translated: 404; Mature: 404
Protein sequence:
>404_residues MKSAFSFLPNWPLAPDAVFWAGLALFAAGLCGELCYRAWRLPRITGYAVIGLIAGSFGFGVIDTSTDETSRLLMDVALGL LLFELGSRLDLRWIRRNPWLVASSLAEATLTFVLVLFVMLALGVSGMVALVLSAIAIATSPSMVIQLKTELRAEGQVSQR LITLTALNSVYAIVLTKLVTSWLHQEAYGNVFATILQPLYLLAGSFIVAYLVARSCNYLFRHMTATMRDEHSFVALFGLV MLAIAVAQALKLSTLLTLLLAGIIVKNLEARPQLWPEHFGTAGWLLTVVLFVLTLTSFTWGDIALGGLLAIVLIVTRLVA KLAGVVAFAKPSGLGMKQGVALGIALTPMSALSYLLVDDTYQLYPNFDPHLRAIVMCSIVILQLVSPFVVYRCLSAVGER SDSN
Sequences:
>Translated_404_residues MKSAFSFLPNWPLAPDAVFWAGLALFAAGLCGELCYRAWRLPRITGYAVIGLIAGSFGFGVIDTSTDETSRLLMDVALGL LLFELGSRLDLRWIRRNPWLVASSLAEATLTFVLVLFVMLALGVSGMVALVLSAIAIATSPSMVIQLKTELRAEGQVSQR LITLTALNSVYAIVLTKLVTSWLHQEAYGNVFATILQPLYLLAGSFIVAYLVARSCNYLFRHMTATMRDEHSFVALFGLV MLAIAVAQALKLSTLLTLLLAGIIVKNLEARPQLWPEHFGTAGWLLTVVLFVLTLTSFTWGDIALGGLLAIVLIVTRLVA KLAGVVAFAKPSGLGMKQGVALGIALTPMSALSYLLVDDTYQLYPNFDPHLRAIVMCSIVILQLVSPFVVYRCLSAVGER SDSN >Mature_404_residues MKSAFSFLPNWPLAPDAVFWAGLALFAAGLCGELCYRAWRLPRITGYAVIGLIAGSFGFGVIDTSTDETSRLLMDVALGL LLFELGSRLDLRWIRRNPWLVASSLAEATLTFVLVLFVMLALGVSGMVALVLSAIAIATSPSMVIQLKTELRAEGQVSQR LITLTALNSVYAIVLTKLVTSWLHQEAYGNVFATILQPLYLLAGSFIVAYLVARSCNYLFRHMTATMRDEHSFVALFGLV MLAIAVAQALKLSTLLTLLLAGIIVKNLEARPQLWPEHFGTAGWLLTVVLFVLTLTSFTWGDIALGGLLAIVLIVTRLVA KLAGVVAFAKPSGLGMKQGVALGIALTPMSALSYLLVDDTYQLYPNFDPHLRAIVMCSIVILQLVSPFVVYRCLSAVGER SDSN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43788; Mature: 43788
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSAFSFLPNWPLAPDAVFWAGLALFAAGLCGELCYRAWRLPRITGYAVIGLIAGSFGFG CCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC VIDTSTDETSRLLMDVALGLLLFELGSRLDLRWIRRNPWLVASSLAEATLTFVLVLFVML EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHH ALGVSGMVALVLSAIAIATSPSMVIQLKTELRAEGQVSQRLITLTALNSVYAIVLTKLVT HHCHHHHHHHHHHHHHHHCCCHHEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SWLHQEAYGNVFATILQPLYLLAGSFIVAYLVARSCNYLFRHMTATMRDEHSFVALFGLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH MLAIAVAQALKLSTLLTLLLAGIIVKNLEARPQLWPEHFGTAGWLLTVVLFVLTLTSFTW HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCH GDIALGGLLAIVLIVTRLVAKLAGVVAFAKPSGLGMKQGVALGIALTPMSALSYLLVDDT HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC YQLYPNFDPHLRAIVMCSIVILQLVSPFVVYRCLSAVGERSDSN HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKSAFSFLPNWPLAPDAVFWAGLALFAAGLCGELCYRAWRLPRITGYAVIGLIAGSFGFG CCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC VIDTSTDETSRLLMDVALGLLLFELGSRLDLRWIRRNPWLVASSLAEATLTFVLVLFVML EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHH ALGVSGMVALVLSAIAIATSPSMVIQLKTELRAEGQVSQRLITLTALNSVYAIVLTKLVT HHCHHHHHHHHHHHHHHHCCCHHEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SWLHQEAYGNVFATILQPLYLLAGSFIVAYLVARSCNYLFRHMTATMRDEHSFVALFGLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH MLAIAVAQALKLSTLLTLLLAGIIVKNLEARPQLWPEHFGTAGWLLTVVLFVLTLTSFTW HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCH GDIALGGLLAIVLIVTRLVAKLAGVVAFAKPSGLGMKQGVALGIALTPMSALSYLLVDDT HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC YQLYPNFDPHLRAIVMCSIVILQLVSPFVVYRCLSAVGERSDSN HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA