Click here to switch to the map view.

The map label for this gene is ybdK [C]

Identifier: 107021563

GI number: 107021563

Start: 278

End: 1393

Strand: Reverse

Name: ybdK [C]

Synonym: Bcen_0001

Alternate gene names: 107021563

Gene position: 1393-278 (Counterclockwise)

Preceding gene: 107021564

Following gene: NA

Centisome position: 0.04

GC content: 62.81

Gene sequence:

>1116_bases
ATGGCACTCGAAACCTTCGTCAATTCCGAACCGTTCACGTTCGGCGTCGAACTGGAGATCCAGGTCGTCAACACGCACAA
CTACGACCTGACCAAAGCGGCATCCGACCTGATGCGCCTGATCCAGGGCGAGACCTTTCCGGGCAACATCACGCCGGAAA
TCACCGAAAGCATGATCGAACTGTCGACCGGCATCTGCCATTCGCACGAGCAGGCCGTCAGCGAGCTGCATGCGATCCGC
GACGTGCTCGTGAAGGCGGCCGACCAGCTCAACGTCGGGCTGGCCGGCGGCGGCACGCATGCGTTCCAGCAATGGAGCGA
CCGGCAGATCTACGATGCGCCGCGCTTCCAGTACATTTCCGAGCTGTACGGCTATCTCGCCAAGCAGTTCACCGTGTTCG
GCCAGCACGTGCACATCGGCTGTCCCGATCCCGACAGCGCGCTGTTCCTGCTGCACTCGATGTCGCGCTTCATTCCGCAC
TTCATCGCGCTGTCGGCGTCGTCGCCGTTCGTGCAGAACGTCGACACAGGCTTCCATTCGGCACGCCTGAATTCGGTGTT
CGCGTTCCCGTTGTCGGGCCGTGCGCCGTTCGTGCTCACCTGGGACAGCTTCGAGGAATACTTCACGAAGATGGTGAACA
CGGGCGTCGTCAACTCGATGAAGGACTTCTACTGGGACATCCGGCCGAAGCCCGGCTACGGCACGATCGAGGTGCGCGTG
ATGGACACGCCGCTGTCGGTCGATCGCGCGGCGGCGATCGCCTGCTACATCCAGACGCTCGCACGCTACCTGCTGACCGA
CCGGCCGCTGAAGCTGTCGGAGGACGATTACCTCGTCTACACGTTCAACCGTTTCGAAGCGTGCCGCTTCGGGCTCGAAG
GCACCTGTGTGAATCCTCAGACGGGCGAGCGTCGCACGATCGCGGAAGACATCCTCGACACGCTCGACCGGATCGCGCCG
CATGCGGCCGCGCTCGGCTCGCGCGCGGCGCTCGACGAGATCGGCGCGCTCGCGAAGGCGCGCGTGAACGACGCATCGTG
GTTGAGAACCGTTTTCAAACAGGAAAAATCGCTGAACGAGACGGTCCGGCAGCAGTGCTTACGTTGGCGCGAGTGA

Upstream 100 bases:

>100_bases
GCTCGATCGTGATCCTGCAGCTCGTCAGCCCGTTCGTCGTCTATCGCTGCCTGTCGGCGGTCGGCGAACGCAGCGACAGC
AACTGATTCCGGAACCTGCC

Downstream 100 bases:

>100_bases
AAATATGTTTTGCAGATAGCAGGATCGACCGCATGGCGATTCGCTGAGCGGTAATCGGCACCGTGTCCCGCCGAAATCGA
TGCGAGGCGTCCTAAAAATC

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MALETFVNSEPFTFGVELEIQVVNTHNYDLTKAASDLMRLIQGETFPGNITPEITESMIELSTGICHSHEQAVSELHAIR
DVLVKAADQLNVGLAGGGTHAFQQWSDRQIYDAPRFQYISELYGYLAKQFTVFGQHVHIGCPDPDSALFLLHSMSRFIPH
FIALSASSPFVQNVDTGFHSARLNSVFAFPLSGRAPFVLTWDSFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRV
MDTPLSVDRAAAIACYIQTLARYLLTDRPLKLSEDDYLVYTFNRFEACRFGLEGTCVNPQTGERRTIAEDILDTLDRIAP
HAAALGSRAALDEIGALAKARVNDASWLRTVFKQEKSLNETVRQQCLRWRE

Sequences:

>Translated_371_residues
MALETFVNSEPFTFGVELEIQVVNTHNYDLTKAASDLMRLIQGETFPGNITPEITESMIELSTGICHSHEQAVSELHAIR
DVLVKAADQLNVGLAGGGTHAFQQWSDRQIYDAPRFQYISELYGYLAKQFTVFGQHVHIGCPDPDSALFLLHSMSRFIPH
FIALSASSPFVQNVDTGFHSARLNSVFAFPLSGRAPFVLTWDSFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRV
MDTPLSVDRAAAIACYIQTLARYLLTDRPLKLSEDDYLVYTFNRFEACRFGLEGTCVNPQTGERRTIAEDILDTLDRIAP
HAAALGSRAALDEIGALAKARVNDASWLRTVFKQEKSLNETVRQQCLRWRE
>Mature_370_residues
ALETFVNSEPFTFGVELEIQVVNTHNYDLTKAASDLMRLIQGETFPGNITPEITESMIELSTGICHSHEQAVSELHAIRD
VLVKAADQLNVGLAGGGTHAFQQWSDRQIYDAPRFQYISELYGYLAKQFTVFGQHVHIGCPDPDSALFLLHSMSRFIPHF
IALSASSPFVQNVDTGFHSARLNSVFAFPLSGRAPFVLTWDSFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRVM
DTPLSVDRAAAIACYIQTLARYLLTDRPLKLSEDDYLVYTFNRFEACRFGLEGTCVNPQTGERRTIAEDILDTLDRIAPH
AAALGSRAALDEIGALAKARVNDASWLRTVFKQEKSLNETVRQQCLRWRE

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=369, Percent_Identity=45.7994579945799, Blast_Score=357, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 41736; Mature: 41604

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALETFVNSEPFTFGVELEIQVVNTHNYDLTKAASDLMRLIQGETFPGNITPEITESMIE
CCCCHHCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LSTGICHSHEQAVSELHAIRDVLVKAADQLNVGLAGGGTHAFQQWSDRQIYDAPRFQYIS
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHCCCCCCCCCCHHHHHHH
ELYGYLAKQFTVFGQHVHIGCPDPDSALFLLHSMSRFIPHFIALSASSPFVQNVDTGFHS
HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHH
ARLNSVFAFPLSGRAPFVLTWDSFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRV
HHHCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEE
MDTPLSVDRAAAIACYIQTLARYLLTDRPLKLSEDDYLVYTFNRFEACRFGLEGTCVNPQ
ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHCCCCCEECCCC
TGERRTIAEDILDTLDRIAPHAAALGSRAALDEIGALAKARVNDASWLRTVFKQEKSLNE
CCCHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TVRQQCLRWRE
HHHHHHHHCCC
>Mature Secondary Structure 
ALETFVNSEPFTFGVELEIQVVNTHNYDLTKAASDLMRLIQGETFPGNITPEITESMIE
CCCHHCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LSTGICHSHEQAVSELHAIRDVLVKAADQLNVGLAGGGTHAFQQWSDRQIYDAPRFQYIS
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHCCCCCCCCCCHHHHHHH
ELYGYLAKQFTVFGQHVHIGCPDPDSALFLLHSMSRFIPHFIALSASSPFVQNVDTGFHS
HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHH
ARLNSVFAFPLSGRAPFVLTWDSFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRV
HHHCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEE
MDTPLSVDRAAAIACYIQTLARYLLTDRPLKLSEDDYLVYTFNRFEACRFGLEGTCVNPQ
ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHCCCCCEECCCC
TGERRTIAEDILDTLDRIAPHAAALGSRAALDEIGALAKARVNDASWLRTVFKQEKSLNE
CCCHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TVRQQCLRWRE
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA