| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488645
Identifier: 103488645
GI number: 103488645
Start: 3323233
End: 3324840
Strand: Reverse
Name: 103488645
Synonym: Sala_3170
Alternate gene names: NA
Gene position: 3324840-3323233 (Counterclockwise)
Preceding gene: 103488646
Following gene: 103488644
Centisome position: 99.39
GC content: 69.47
Gene sequence:
>1608_bases GTGACAGAGAATAAAGACGAATATTACCAGCCATGGCTGCGCGACCCCGCGCCGACGCCGGGTGTGGGCGCGCGCGCCCG CGACGAAGGATTGGCCAAGCCCAAGGAAGAACCGCCGGTCGGCATCGATCTGACGCAATACAGCAAAGCCGACAAGCCGC GCGGCGAGCCACTGGTGAGACCCGAAGCGATCAAGGCGGGCACGGCGAGCCTGTGGAACCAGCTTCGCCGCGGCGCCGAA GCCTTTGCCGACTGGACGATCGGCATCGGCGAACGCGCCGACATTCCGGCGCGCGTCGAGGCGATGGAGATACCGCGGCG CGCCAGTGAATTTGCAAGCAGGACGGGCGCTGCGACCGCACGCGCCGCACGGGTCGCCGGACGCGGATCGGCACGCGCCG GCCGCGCCCTGGCGAAGGCCAGCGGCGAGGCATGGGCCAGAATGGCGCTCGGAGCCAAGGCGCGGAAATTGTCGCGCGAT GCCGGGCGCGGGCTGGGCGAGGTTGCCGACAGGACCAGGGCGGGGGTCGCCGACCTCGCCAAGGCGAGCAGCGAAAGCCT GCGCGAGAGCATCGGCGATGCCGCGACCAGGCTGCGCCCTGCGCCGCGCGAAGAACCGGCGCCGCCACCATCGGGGCTCG AACAATTGCTCGCGCGCGAGGATGCCGCGGCGGAAGCCAAGGCGCCGGCCGCGCCCGACCTGCCGCTCTTTGCGGGCGAC GCGGCGATCCCGTTGACCACAAAGCCGACGCCGAAGACGCGAACGGCCGCCCCGGACGGCGACGCCCGCTCGCCACTCGT CAAGGCGCCGGACGCAAGGTCGGCGAGCGAAAAGGCCATGGCGGCGGGGCGACTGCCGACATTGAAGGGGACGGGCATGG AAAGCGGTTCGATGCGCCTTTGGGCGCTGGCCGGCGGCGGCATCCTGCTGCTCGCGCTGGTTTTCTGGCTCGGCGGACGC GTCGGCGGCGGGCTCAGCAAGAGCGAGGTCGAAACCGTCGTCGCCGACTATATCAGGGCGAATCCGCAGATCATCCCCGA AGCGCTGGAAGCGCAGCGTGGTCGCGAAATCGCGAAAGCGATCGACGCGGTGCGTCCGGCGCTCGAAAAACCCTATGCCG GGGCGTGGGCGGGCAATGCCGACGGCGACGTCACGCTGGTGGTCTTCACCGACTATGCCTGCGGCTTCTGCCGCGCGAGC GTGCCCGACGTCGACCGGCTGATCCGTGAGGACAAACGCCTGAAGGTCGTGTTCCGCGAACTGCCGATCATCGCCCCGCA GAGCCGCGACGCCGCGATCATGGCGCTCGCCGCTGCGCGGCAGGGAAAATATGACGCGTTTCACCACGCGATGTTCGCAG CGAGTTCACTCGATCGCGGGGCGATTGCGGCTGCGGCCGAACGGGCCGGCGTCGTCACCGACGGCAGCGCCGATGCGACC GCGAACGAAGCGCTGTTCCAGCGCGAGATCGACAACAATATGGCGATCGCGACGCAGCTTGGGCTGAACGCGACGCCGAC ATGGATCGTCGGCGACCAGCTGCTGCAGGGACAGGTCGGCTATGCCGTGCTGCGACAGGCCATCGACAAAGCGCGGACCG AGGGCTGA
Upstream 100 bases:
>100_bases TGGTCGCTCGCGCCGAGGTGGAACGCGAGCGTAAACGGCGTTAGACTCGCGGGAAGCAAGCGGGGGACCGCATCGCCTAA CCGATGCGCAAGGGCAGCAA
Downstream 100 bases:
>100_bases GGCGCGGCGTTGGCGACGGTCACCCATGACGAGGCGCTCGCCCACGCCCGCCGGCTGCTGAACGGCCAGCCGGGCGCCGC GCTCGAACAGGCGCGCGCGA
Product: DSBA oxidoreductase
Products: NA
Alternate protein names: Outer Membrane Protein; Dsba Oxidoreductase; 27kDa Outer Membrane Protein; Thioredoxin Domain Protein; 27 KDa Outer Membrane Protein; ThiolDisulfide Interchange Protein DsbA; DsbA Oxidoreductase; Twin-Arginine Translocation Pathway Signal; DSBA-Like Thioredoxin Domain Protein; Protein-Disulfide Isomerase; Oxidoreductase; DSBA Family Oxidoreductase; Metal Resistance Protein; Disulfide Bonded Thioredoxin Protein; Disulfide Oxidoreductase; Fis Family Transcriptional Regulator
Number of amino acids: Translated: 535; Mature: 534
Protein sequence:
>535_residues MTENKDEYYQPWLRDPAPTPGVGARARDEGLAKPKEEPPVGIDLTQYSKADKPRGEPLVRPEAIKAGTASLWNQLRRGAE AFADWTIGIGERADIPARVEAMEIPRRASEFASRTGAATARAARVAGRGSARAGRALAKASGEAWARMALGAKARKLSRD AGRGLGEVADRTRAGVADLAKASSESLRESIGDAATRLRPAPREEPAPPPSGLEQLLAREDAAAEAKAPAAPDLPLFAGD AAIPLTTKPTPKTRTAAPDGDARSPLVKAPDARSASEKAMAAGRLPTLKGTGMESGSMRLWALAGGGILLLALVFWLGGR VGGGLSKSEVETVVADYIRANPQIIPEALEAQRGREIAKAIDAVRPALEKPYAGAWAGNADGDVTLVVFTDYACGFCRAS VPDVDRLIREDKRLKVVFRELPIIAPQSRDAAIMALAAARQGKYDAFHHAMFAASSLDRGAIAAAAERAGVVTDGSADAT ANEALFQREIDNNMAIATQLGLNATPTWIVGDQLLQGQVGYAVLRQAIDKARTEG
Sequences:
>Translated_535_residues MTENKDEYYQPWLRDPAPTPGVGARARDEGLAKPKEEPPVGIDLTQYSKADKPRGEPLVRPEAIKAGTASLWNQLRRGAE AFADWTIGIGERADIPARVEAMEIPRRASEFASRTGAATARAARVAGRGSARAGRALAKASGEAWARMALGAKARKLSRD AGRGLGEVADRTRAGVADLAKASSESLRESIGDAATRLRPAPREEPAPPPSGLEQLLAREDAAAEAKAPAAPDLPLFAGD AAIPLTTKPTPKTRTAAPDGDARSPLVKAPDARSASEKAMAAGRLPTLKGTGMESGSMRLWALAGGGILLLALVFWLGGR VGGGLSKSEVETVVADYIRANPQIIPEALEAQRGREIAKAIDAVRPALEKPYAGAWAGNADGDVTLVVFTDYACGFCRAS VPDVDRLIREDKRLKVVFRELPIIAPQSRDAAIMALAAARQGKYDAFHHAMFAASSLDRGAIAAAAERAGVVTDGSADAT ANEALFQREIDNNMAIATQLGLNATPTWIVGDQLLQGQVGYAVLRQAIDKARTEG >Mature_534_residues TENKDEYYQPWLRDPAPTPGVGARARDEGLAKPKEEPPVGIDLTQYSKADKPRGEPLVRPEAIKAGTASLWNQLRRGAEA FADWTIGIGERADIPARVEAMEIPRRASEFASRTGAATARAARVAGRGSARAGRALAKASGEAWARMALGAKARKLSRDA GRGLGEVADRTRAGVADLAKASSESLRESIGDAATRLRPAPREEPAPPPSGLEQLLAREDAAAEAKAPAAPDLPLFAGDA AIPLTTKPTPKTRTAAPDGDARSPLVKAPDARSASEKAMAAGRLPTLKGTGMESGSMRLWALAGGGILLLALVFWLGGRV GGGLSKSEVETVVADYIRANPQIIPEALEAQRGREIAKAIDAVRPALEKPYAGAWAGNADGDVTLVVFTDYACGFCRASV PDVDRLIREDKRLKVVFRELPIIAPQSRDAAIMALAAARQGKYDAFHHAMFAASSLDRGAIAAAAERAGVVTDGSADATA NEALFQREIDNNMAIATQLGLNATPTWIVGDQLLQGQVGYAVLRQAIDKARTEG
Specific function: Unknown
COG id: COG1651
COG function: function code O; Protein-disulfide isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56330; Mature: 56199
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTENKDEYYQPWLRDPAPTPGVGARARDEGLAKPKEEPPVGIDLTQYSKADKPRGEPLVR CCCCCCHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC PEAIKAGTASLWNQLRRGAEAFADWTIGIGERADIPARVEAMEIPRRASEFASRTGAATA CHHHHCCHHHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHCCHHHHHHHHHCCHHHH RAARVAGRGSARAGRALAKASGEAWARMALGAKARKLSRDAGRGLGEVADRTRAGVADLA HHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH KASSESLRESIGDAATRLRPAPREEPAPPPSGLEQLLAREDAAAEAKAPAAPDLPLFAGD HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC AAIPLTTKPTPKTRTAAPDGDARSPLVKAPDARSASEKAMAAGRLPTLKGTGMESGSMRL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEE WALAGGGILLLALVFWLGGRVGGGLSKSEVETVVADYIRANPQIIPEALEAQRGREIAKA EEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH IDAVRPALEKPYAGAWAGNADGDVTLVVFTDYACGFCRASVPDVDRLIREDKRLKVVFRE HHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHCCCCCHHHHHHHHCHHHHHHHHH LPIIAPQSRDAAIMALAAARQGKYDAFHHAMFAASSLDRGAIAAAAERAGVVTDGSADAT CCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCCCCH ANEALFQREIDNNMAIATQLGLNATPTWIVGDQLLQGQVGYAVLRQAIDKARTEG HHHHHHHHHHCCCEEEEEECCCCCCCCEEECHHHHHCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TENKDEYYQPWLRDPAPTPGVGARARDEGLAKPKEEPPVGIDLTQYSKADKPRGEPLVR CCCCCHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC PEAIKAGTASLWNQLRRGAEAFADWTIGIGERADIPARVEAMEIPRRASEFASRTGAATA CHHHHCCHHHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHCCHHHHHHHHHCCHHHH RAARVAGRGSARAGRALAKASGEAWARMALGAKARKLSRDAGRGLGEVADRTRAGVADLA HHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH KASSESLRESIGDAATRLRPAPREEPAPPPSGLEQLLAREDAAAEAKAPAAPDLPLFAGD HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC AAIPLTTKPTPKTRTAAPDGDARSPLVKAPDARSASEKAMAAGRLPTLKGTGMESGSMRL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEE WALAGGGILLLALVFWLGGRVGGGLSKSEVETVVADYIRANPQIIPEALEAQRGREIAKA EEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH IDAVRPALEKPYAGAWAGNADGDVTLVVFTDYACGFCRASVPDVDRLIREDKRLKVVFRE HHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHCCCCCHHHHHHHHCHHHHHHHHH LPIIAPQSRDAAIMALAAARQGKYDAFHHAMFAASSLDRGAIAAAAERAGVVTDGSADAT CCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCCCCH ANEALFQREIDNNMAIATQLGLNATPTWIVGDQLLQGQVGYAVLRQAIDKARTEG HHHHHHHHHHCCCEEEEEECCCCCCCCEEECHHHHHCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA