| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is btuB [H]
Identifier: 103488643
GI number: 103488643
Start: 3318722
End: 3321109
Strand: Reverse
Name: btuB [H]
Synonym: Sala_3168
Alternate gene names: 103488643
Gene position: 3321109-3318722 (Counterclockwise)
Preceding gene: 103488644
Following gene: 103488642
Centisome position: 99.28
GC content: 60.97
Gene sequence:
>2388_bases ATGCGGAATATGTCGAAAGTGCTGGTGCGGCGCAGCGCGATGCTGCTCGGCGGCACCATCCTGGCCACGTCGGGCACGGC GTTGGCGCAGCAAGCAAATACAGAGGGCGACAATGACATCGTCGTCACCGCGTCGAAGCGCGAGGAAAATCTGCAGGACG TGCCGCTGGCGATCACCGCGATCGGCAACGAACGGCTCAGCGAATTGCAGGTCAAGGAGTTTCAGGACGTCGTCAAGTTC CTGCCCTCCGTGACAATCCAGACCGCGGCGCCGGGGTTCAGCCAGGTTTATTTCCGCGGTGTGGCGTCGGGCGAGAATGC CAACCACTCGGCGTCGCTGCCGACGGTCGGCACCTATCTGGACGAAATGCCGATCACGACGATCCAGGGCGCGCTCGACA TCCATGCCTATGACCTGGCGCGCGTCGAGGCGCTCGCGGGGCCGCAGGGTACGCTCTACGGCGCCAGCTCGATGGCGGGC ACGATCAAGCTCGTCACCAACCGGCCCGACCCCAGCGGCACCTACGGCTCGGTGGGGCTCGAACTCAACAGCGTCGCGCA CGGCGACGTCGGCGGCGTCGCCGAAGGCTTCGTCAACGCCCCGCTCGGCGAACGCGCGGCGCTGCGCCTCGTCGGCTGGT ATCGCCACGATGCGGGCTATATCGACAATATCGCGGGCAGCCGCACCTATCCGACCAGCGACATCACCCAGGACAATGCC GCGCTGGTCGAAAAGAATTACAACGACGTCGATACCTATGGCGCGCGGCTTGCACTCGGCATCGACCTTGACGACGATTG GACGATCCGCCCCACGCTGATGGGGCAGGTGCAGAAAACCAATGGCAGCTTTGCCCAGGAGCGGTCGACTGCGGTCAGCG ACGACCTTCAGACCGTGCAATATAATCCCGAAAACTCGAAGGACCGGTGGATTCAGGCCGCGCTGACGATCGAAGGCAAG CTGGGCAATTGGGATCTGACCGTCACGGGCGGCCACCTGCGCCGGAAAACCGAGGTCGAAAGCGACTATTCGGATTATGC CTATTTCTATGATGCGCTCTACGGCTATGGCGCCTATTTCTATGATAACAACGGCGACCTTATCAGCCCGAATCAATATA TCCAGGGCATCGACCGGTACAAAAAGAGCTTTGTCGAGGCGCGCGTCGCCTCCCCGGCCGACGCGCGCATCCGCTTTATC GGCGGACTGTTCTGGCAGCGTCAGTCGCACAATATCGAACAGAATTACATTATCGACAACCTGACGGACCTGTTCACGGT CACGGGCACTGACAGCAATATCTGGCTGACCAAGCAATTGCGTATCGACCGCGACTATGCGGCGTTCGGCGAGATCAGCT TCGACATCACCGACAAATTGACGCTGACCGGCGGCGGCCGCGTGTACAAGTTCGACAACAGCCTGGTCGGCTTCTTCGGC TATAATGCCAATTTCTCCAGCCGAACCGGCGAAGCCGCCTGTTTTGCCGGTCCAATCATTTCCGGGACGCCATGCACCAA TCTCGACAAGCGGACGAAGGACAGCGACTTCATCCACAAGCTCAATCTGACCTACAAGTTCAGCGATGACGCGCTTGTCT ATGCCACCTGGTCGCGCGGTTTCCGCCCCGGCGGCATCAACCGCCGCGGAACGCTGCCGCCCTATGGCCCCGACACGCTC GACAATTATGAGTTCGGGTGGAAAACGAACTGGGGACCGGTGCGTTTCAATGGCGCCATTTATCAGGAAGACTGGACCGA CATCCAGCTTTCCTTCCTCGGTCTCAACGGCCTCACCGAAATCCGCAACGCCGGGGTCGCGCGCATCCGGGGGATCGAAA TCGACCTCGGCTATCGCCGGAACGGTTTTTCGATCAACGCGGGCATGAGCTATAATGACGCCGAAATCCGCCGCGATTTC TGCCGCATCGCCAATGACAGCTTCGACTGCACCCTGCCCGGATCGGACGGCGCGGACAATGCGCTCCTCGCGCCAAAGGG CACCAGCCTGCCGGTGACGCCCAAGTTCAAGGGCAATGTCGTCGCGCGTTACGAGTTTCCGGTCGGCGGCATGGACGCGC ATGTGCAGTTTGCTGTGAACCATATCGGCAAGCGGCGCAGCGACCTCAGAACCTTTGAGAACAGCCTGAAGGGCTTTTTT GATGCCTATACCACCGCCGACCTCAGCGTCGGCGTCAAGGGCGACGACTGGAAAGCGGAACTGTTCGCGACCAACTTGTT CGACGAAAATGGCGTCATCAACTCGGGCGTCCAGTGTCTGGAGACGACATGCGGCGATCCCGACGGCATCAGCAGCACGG GCGGCGTCTTCTACGACACGGTCATCCGCCCGCGGCTGATCGGAATCAAGGTGAGCAAGGACTTCTGA
Upstream 100 bases:
>100_bases ACATTTTCGACCAATGGCCGGGCGCACCGACGAACTGGGCTTGCGCTCGCGCCGCGCTGCGTCATTCTCCTGTCATATCG ATGTCATCGAGGGGGGTCTC
Downstream 100 bases:
>100_bases CCGGGTGAGCGATCCCGCAAATCGCCACGAAAGGCCGCGCCGCAAGCTCGGCCTTTCGATGGCGATTGCGCTGGTCATGG GCAATATGATCGGCTCGGGG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 795; Mature: 795
Protein sequence:
>795_residues MRNMSKVLVRRSAMLLGGTILATSGTALAQQANTEGDNDIVVTASKREENLQDVPLAITAIGNERLSELQVKEFQDVVKF LPSVTIQTAAPGFSQVYFRGVASGENANHSASLPTVGTYLDEMPITTIQGALDIHAYDLARVEALAGPQGTLYGASSMAG TIKLVTNRPDPSGTYGSVGLELNSVAHGDVGGVAEGFVNAPLGERAALRLVGWYRHDAGYIDNIAGSRTYPTSDITQDNA ALVEKNYNDVDTYGARLALGIDLDDDWTIRPTLMGQVQKTNGSFAQERSTAVSDDLQTVQYNPENSKDRWIQAALTIEGK LGNWDLTVTGGHLRRKTEVESDYSDYAYFYDALYGYGAYFYDNNGDLISPNQYIQGIDRYKKSFVEARVASPADARIRFI GGLFWQRQSHNIEQNYIIDNLTDLFTVTGTDSNIWLTKQLRIDRDYAAFGEISFDITDKLTLTGGGRVYKFDNSLVGFFG YNANFSSRTGEAACFAGPIISGTPCTNLDKRTKDSDFIHKLNLTYKFSDDALVYATWSRGFRPGGINRRGTLPPYGPDTL DNYEFGWKTNWGPVRFNGAIYQEDWTDIQLSFLGLNGLTEIRNAGVARIRGIEIDLGYRRNGFSINAGMSYNDAEIRRDF CRIANDSFDCTLPGSDGADNALLAPKGTSLPVTPKFKGNVVARYEFPVGGMDAHVQFAVNHIGKRRSDLRTFENSLKGFF DAYTTADLSVGVKGDDWKAELFATNLFDENGVINSGVQCLETTCGDPDGISSTGGVFYDTVIRPRLIGIKVSKDF
Sequences:
>Translated_795_residues MRNMSKVLVRRSAMLLGGTILATSGTALAQQANTEGDNDIVVTASKREENLQDVPLAITAIGNERLSELQVKEFQDVVKF LPSVTIQTAAPGFSQVYFRGVASGENANHSASLPTVGTYLDEMPITTIQGALDIHAYDLARVEALAGPQGTLYGASSMAG TIKLVTNRPDPSGTYGSVGLELNSVAHGDVGGVAEGFVNAPLGERAALRLVGWYRHDAGYIDNIAGSRTYPTSDITQDNA ALVEKNYNDVDTYGARLALGIDLDDDWTIRPTLMGQVQKTNGSFAQERSTAVSDDLQTVQYNPENSKDRWIQAALTIEGK LGNWDLTVTGGHLRRKTEVESDYSDYAYFYDALYGYGAYFYDNNGDLISPNQYIQGIDRYKKSFVEARVASPADARIRFI GGLFWQRQSHNIEQNYIIDNLTDLFTVTGTDSNIWLTKQLRIDRDYAAFGEISFDITDKLTLTGGGRVYKFDNSLVGFFG YNANFSSRTGEAACFAGPIISGTPCTNLDKRTKDSDFIHKLNLTYKFSDDALVYATWSRGFRPGGINRRGTLPPYGPDTL DNYEFGWKTNWGPVRFNGAIYQEDWTDIQLSFLGLNGLTEIRNAGVARIRGIEIDLGYRRNGFSINAGMSYNDAEIRRDF CRIANDSFDCTLPGSDGADNALLAPKGTSLPVTPKFKGNVVARYEFPVGGMDAHVQFAVNHIGKRRSDLRTFENSLKGFF DAYTTADLSVGVKGDDWKAELFATNLFDENGVINSGVQCLETTCGDPDGISSTGGVFYDTVIRPRLIGIKVSKDF >Mature_795_residues MRNMSKVLVRRSAMLLGGTILATSGTALAQQANTEGDNDIVVTASKREENLQDVPLAITAIGNERLSELQVKEFQDVVKF LPSVTIQTAAPGFSQVYFRGVASGENANHSASLPTVGTYLDEMPITTIQGALDIHAYDLARVEALAGPQGTLYGASSMAG TIKLVTNRPDPSGTYGSVGLELNSVAHGDVGGVAEGFVNAPLGERAALRLVGWYRHDAGYIDNIAGSRTYPTSDITQDNA ALVEKNYNDVDTYGARLALGIDLDDDWTIRPTLMGQVQKTNGSFAQERSTAVSDDLQTVQYNPENSKDRWIQAALTIEGK LGNWDLTVTGGHLRRKTEVESDYSDYAYFYDALYGYGAYFYDNNGDLISPNQYIQGIDRYKKSFVEARVASPADARIRFI GGLFWQRQSHNIEQNYIIDNLTDLFTVTGTDSNIWLTKQLRIDRDYAAFGEISFDITDKLTLTGGGRVYKFDNSLVGFFG YNANFSSRTGEAACFAGPIISGTPCTNLDKRTKDSDFIHKLNLTYKFSDDALVYATWSRGFRPGGINRRGTLPPYGPDTL DNYEFGWKTNWGPVRFNGAIYQEDWTDIQLSFLGLNGLTEIRNAGVARIRGIEIDLGYRRNGFSINAGMSYNDAEIRRDF CRIANDSFDCTLPGSDGADNALLAPKGTSLPVTPKFKGNVVARYEFPVGGMDAHVQFAVNHIGKRRSDLRTFENSLKGFF DAYTTADLSVGVKGDDWKAELFATNLFDENGVINSGVQCLETTCGDPDGISSTGGVFYDTVIRPRLIGIKVSKDF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=220, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1788478, Length=206, Percent_Identity=25.2427184466019, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 87221; Mature: 87221
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNMSKVLVRRSAMLLGGTILATSGTALAQQANTEGDNDIVVTASKREENLQDVPLAITA CCCHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEE IGNERLSELQVKEFQDVVKFLPSVTIQTAAPGFSQVYFRGVASGENANHSASLPTVGTYL CCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHEEEEEECCCCCCCCCCCCCHHHHHH DEMPITTIQGALDIHAYDLARVEALAGPQGTLYGASSMAGTIKLVTNRPDPSGTYGSVGL HCCCCEEECCEEEEEEHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCCCCEEECE ELNSVAHGDVGGVAEGFVNAPLGERAALRLVGWYRHDAGYIDNIAGSRTYPTSDITQDNA EECCCCCCCCCCHHHHHHCCCCCCCCEEEEEEEEECCCCCHHCCCCCCCCCCCCCCCCCC ALVEKNYNDVDTYGARLALGIDLDDDWTIRPTLMGQVQKTNGSFAQERSTAVSDDLQTVQ EEEECCCCCCCCCCCEEEEEEECCCCCEECHHEEEEEEECCCCHHHHHHHHHCCCCEEEE YNPENSKDRWIQAALTIEGKLGNWDLTVTGGHLRRKTEVESDYSDYAYFYDALYGYGAYF ECCCCCCCCEEEEEEEEEECCCCEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHCCEEE YDNNGDLISPNQYIQGIDRYKKSFVEARVASPADARIRFIGGLFWQRQSHNIEQNYIIDN ECCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCHHEECCC LTDLFTVTGTDSNIWLTKQLRIDRDYAAFGEISFDITDKLTLTGGGRVYKFDNSLVGFFG CCEEEEEECCCCCEEEEEEEEECCCCCEECEEEEEEEEEEEEECCCEEEEECCCEEEEEE YNANFSSRTGEAACFAGPIISGTPCTNLDKRTKDSDFIHKLNLTYKFSDDALVYATWSRG CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCC FRPGGINRRGTLPPYGPDTLDNYEFGWKTNWGPVRFNGAIYQEDWTDIQLSFLGLNGLTE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCEEEEEEEECCCHHH IRNAGVARIRGIEIDLGYRRNGFSINAGMSYNDAEIRRDFCRIANDSFDCTLPGSDGADN HHCCCCEEEEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCC ALLAPKGTSLPVTPKFKGNVVARYEFPVGGMDAHVQFAVNHIGKRRSDLRTFENSLKGFF EEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAYTTADLSVGVKGDDWKAELFATNLFDENGVINSGVQCLETTCGDPDGISSTGGVFYDT HHHEECEEEEECCCCCCEEEEEEEECCCCCCCCHHCHHHHHHCCCCCCCCCCCCCEEEEH VIRPRLIGIKVSKDF CCCCEEEEEEEECCC >Mature Secondary Structure MRNMSKVLVRRSAMLLGGTILATSGTALAQQANTEGDNDIVVTASKREENLQDVPLAITA CCCHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEE IGNERLSELQVKEFQDVVKFLPSVTIQTAAPGFSQVYFRGVASGENANHSASLPTVGTYL CCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHEEEEEECCCCCCCCCCCCCHHHHHH DEMPITTIQGALDIHAYDLARVEALAGPQGTLYGASSMAGTIKLVTNRPDPSGTYGSVGL HCCCCEEECCEEEEEEHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCCCCEEECE ELNSVAHGDVGGVAEGFVNAPLGERAALRLVGWYRHDAGYIDNIAGSRTYPTSDITQDNA EECCCCCCCCCCHHHHHHCCCCCCCCEEEEEEEEECCCCCHHCCCCCCCCCCCCCCCCCC ALVEKNYNDVDTYGARLALGIDLDDDWTIRPTLMGQVQKTNGSFAQERSTAVSDDLQTVQ EEEECCCCCCCCCCCEEEEEEECCCCCEECHHEEEEEEECCCCHHHHHHHHHCCCCEEEE YNPENSKDRWIQAALTIEGKLGNWDLTVTGGHLRRKTEVESDYSDYAYFYDALYGYGAYF ECCCCCCCCEEEEEEEEEECCCCEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHCCEEE YDNNGDLISPNQYIQGIDRYKKSFVEARVASPADARIRFIGGLFWQRQSHNIEQNYIIDN ECCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCHHEECCC LTDLFTVTGTDSNIWLTKQLRIDRDYAAFGEISFDITDKLTLTGGGRVYKFDNSLVGFFG CCEEEEEECCCCCEEEEEEEEECCCCCEECEEEEEEEEEEEEECCCEEEEECCCEEEEEE YNANFSSRTGEAACFAGPIISGTPCTNLDKRTKDSDFIHKLNLTYKFSDDALVYATWSRG CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCC FRPGGINRRGTLPPYGPDTLDNYEFGWKTNWGPVRFNGAIYQEDWTDIQLSFLGLNGLTE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCEEEEEEEECCCHHH IRNAGVARIRGIEIDLGYRRNGFSINAGMSYNDAEIRRDFCRIANDSFDCTLPGSDGADN HHCCCCEEEEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCC ALLAPKGTSLPVTPKFKGNVVARYEFPVGGMDAHVQFAVNHIGKRRSDLRTFENSLKGFF EEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAYTTADLSVGVKGDDWKAELFATNLFDENGVINSGVQCLETTCGDPDGISSTGGVFYDT HHHEECEEEEECCCCCCEEEEEEEECCCCCCCCHHCHHHHHHCCCCCCCCCCCCCEEEEH VIRPRLIGIKVSKDF CCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11598060 [H]