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The map label for this gene is carC [H]

Identifier: 103488641

GI number: 103488641

Start: 3315826

End: 3317445

Strand: Direct

Name: carC [H]

Synonym: Sala_3166

Alternate gene names: 103488641

Gene position: 3315826-3317445 (Clockwise)

Preceding gene: 103488640

Following gene: 103488648

Centisome position: 99.12

GC content: 65.86

Gene sequence:

>1620_bases
ATGACCAAAGCCTGTGACGCCCTGATTATCGGCGCCGGCCACAACGGCCTCGTCTGCGCCTTCTATCTCGCGAGGGCGGG
GTTGAAGGTGCGGATCGTCGAGGCGCGCGACGTCGTCGGCGGCGCCGCGGTGACCGAGGAGTTCGCGCCGGGCTTCCGCA
ACTCGGTCGCGAGCTACACGGTCAGCCTGCTCCAGCCAAAGGTGATCGCCGACATGCGCCTTGCCGATCATGGCTATCGC
GTGATCGAACGCCCGATCAGCAATTTCCTGCCGCAGGAGGATGGCGGCTATTTGAAGCTCGGCGGCGGGCTTGAACGCAC
GCAGGCCGAGTTCGCCAAGTTCAGTGCGCGCGATGCCGAGGTGCTGCCCGCCTATTATGACGCACTCGAAAATGTCGCCG
AACTGCTCCGCGACCTCGCACTGCGCGTCCCGCCCAACGTCGGCGAGGGGCTGCGCACCTTGCTCGACGGCGCGCGGCAG
GGGCGGCGCTTCGCAGGCCTCAGCCTCGAACAGCAGCGCGACGTGCTCGACCTCTTCACCAAATCGGCGCGCACGATGCT
CGACAGCTGGTTCGAAAGCGAAGCGGTCAAGGCCGCCTTCGGCTTCGATGCCGTGGTCGGCAACTACGCCAGCCCGGACA
CGCCGGGCAGCGCCTATGTCCTTCTGCACCACGTCTTTGGCGAGGTGAACAGCAGGAAGGGCGCGTGGGGGCACAGCGTC
GGCGGCATGGGCCGGATTACCGAGATCATGGCGAAGGTTTGCCGCGATCATGGCGTCGAGATCAGCCTCGAAAGTCCGGT
CGCGAAAGTGCTGGTTGACGGAGGCAAAGCCGTCGGGGTGAGGCTTGTAGGCGGCGAAGAAATCGCCGCGGCGCGCGTGA
TCGCCAATGTCGGGCCGAAACTGCTCTACGAACGGCTGATGGACGCCGCCGATCTGCCCGCCGACTTCCAGCGGCGGATC
AGCGGCTTCAAGGTCGGAAGCGGAACATTCCGCATGAATGTCGCGCTGTCCGAGCTTCCCCGTTTCACCTGCCTGCCCGA
ACCCGGCGAGCACCACCAGTCGGGAATCATCCTCGCCCCGACGCTTGATTATATGGACCGCGCCTTCCTCGATGCGAAAC
AATATGGCTGGTCGAAGGCGCCGATCGTCGAAATGCTGATCCCCTCGACCGTCGACGACAGCCTCGCGCCTGAAGGCTGT
CACGTTGCGAGCCTCTTCTGCCAGCAATTCGCGCCTGAATTGCCCGCCAAAGAAGACGGGACTCTCCGCGACTGGGACGA
TGAGGAGGAAGCTGCCGCCGACTGCATCCTCGACACCGTCGAAAAACACGCGCCGGGTTTCCGCGCGAGTATCGTCGGCC
AGACGCGGCTGTCGCCCAAGGGGCTCGAACGCAAGTTCGGCCTCGTCGGCGGCGACATCATGCACGGCAATATGAGCCTT
GACCAGCTCTGGGCCGCGCGCCCGGTGCTCGGTAATGGCGGCTATCGCGGGCCGGTGAAGGGGCTGTATATGTGCGGCGC
GGGCACGCATCCGGGCGGCGGCGTCACCGGCGCGCCGGGGCATAATGCGGCTGCAGTGATCCTACGCGACCGGGGGCTCT
TCGCGCCCCGCTGGCGCTGA

Upstream 100 bases:

>100_bases
GCGACAAGGAAGTCTGCCTCAAACATTTCTGCGCGCGGATGCGCGCCATCATTCCCGAAGCGCGGCTCGAGCACGCGCCT
GCCGCCGGTTGGAGCAATAA

Downstream 100 bases:

>100_bases
CAGCATGGTCCAAGCGTAGAGCGGCAACCCTGCGGCCATCAATATGAGGCTCATCGCGCTGACACCGATCCCCGCACCCC
ACAAAGTCCAGACGGCATAG

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 539; Mature: 538

Protein sequence:

>539_residues
MTKACDALIIGAGHNGLVCAFYLARAGLKVRIVEARDVVGGAAVTEEFAPGFRNSVASYTVSLLQPKVIADMRLADHGYR
VIERPISNFLPQEDGGYLKLGGGLERTQAEFAKFSARDAEVLPAYYDALENVAELLRDLALRVPPNVGEGLRTLLDGARQ
GRRFAGLSLEQQRDVLDLFTKSARTMLDSWFESEAVKAAFGFDAVVGNYASPDTPGSAYVLLHHVFGEVNSRKGAWGHSV
GGMGRITEIMAKVCRDHGVEISLESPVAKVLVDGGKAVGVRLVGGEEIAAARVIANVGPKLLYERLMDAADLPADFQRRI
SGFKVGSGTFRMNVALSELPRFTCLPEPGEHHQSGIILAPTLDYMDRAFLDAKQYGWSKAPIVEMLIPSTVDDSLAPEGC
HVASLFCQQFAPELPAKEDGTLRDWDDEEEAAADCILDTVEKHAPGFRASIVGQTRLSPKGLERKFGLVGGDIMHGNMSL
DQLWAARPVLGNGGYRGPVKGLYMCGAGTHPGGGVTGAPGHNAAAVILRDRGLFAPRWR

Sequences:

>Translated_539_residues
MTKACDALIIGAGHNGLVCAFYLARAGLKVRIVEARDVVGGAAVTEEFAPGFRNSVASYTVSLLQPKVIADMRLADHGYR
VIERPISNFLPQEDGGYLKLGGGLERTQAEFAKFSARDAEVLPAYYDALENVAELLRDLALRVPPNVGEGLRTLLDGARQ
GRRFAGLSLEQQRDVLDLFTKSARTMLDSWFESEAVKAAFGFDAVVGNYASPDTPGSAYVLLHHVFGEVNSRKGAWGHSV
GGMGRITEIMAKVCRDHGVEISLESPVAKVLVDGGKAVGVRLVGGEEIAAARVIANVGPKLLYERLMDAADLPADFQRRI
SGFKVGSGTFRMNVALSELPRFTCLPEPGEHHQSGIILAPTLDYMDRAFLDAKQYGWSKAPIVEMLIPSTVDDSLAPEGC
HVASLFCQQFAPELPAKEDGTLRDWDDEEEAAADCILDTVEKHAPGFRASIVGQTRLSPKGLERKFGLVGGDIMHGNMSL
DQLWAARPVLGNGGYRGPVKGLYMCGAGTHPGGGVTGAPGHNAAAVILRDRGLFAPRWR
>Mature_538_residues
TKACDALIIGAGHNGLVCAFYLARAGLKVRIVEARDVVGGAAVTEEFAPGFRNSVASYTVSLLQPKVIADMRLADHGYRV
IERPISNFLPQEDGGYLKLGGGLERTQAEFAKFSARDAEVLPAYYDALENVAELLRDLALRVPPNVGEGLRTLLDGARQG
RRFAGLSLEQQRDVLDLFTKSARTMLDSWFESEAVKAAFGFDAVVGNYASPDTPGSAYVLLHHVFGEVNSRKGAWGHSVG
GMGRITEIMAKVCRDHGVEISLESPVAKVLVDGGKAVGVRLVGGEEIAAARVIANVGPKLLYERLMDAADLPADFQRRIS
GFKVGSGTFRMNVALSELPRFTCLPEPGEHHQSGIILAPTLDYMDRAFLDAKQYGWSKAPIVEMLIPSTVDDSLAPEGCH
VASLFCQQFAPELPAKEDGTLRDWDDEEEAAADCILDTVEKHAPGFRASIVGQTRLSPKGLERKFGLVGGDIMHGNMSLD
QLWAARPVLGNGGYRGPVKGLYMCGAGTHPGGGVTGAPGHNAAAVILRDRGLFAPRWR

Specific function: This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI229577391, Length=551, Percent_Identity=42.2867513611615, Blast_Score=390, Evalue=1e-108,
Organism=Caenorhabditis elegans, GI17540238, Length=536, Percent_Identity=39.365671641791, Blast_Score=377, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: NA

Molecular weight: Translated: 57937; Mature: 57806

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKACDALIIGAGHNGLVCAFYLARAGLKVRIVEARDVVGGAAVTEEFAPGFRNSVASYT
CCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHCCHHHHHHHCCCHHHHHHHHH
VSLLQPKVIADMRLADHGYRVIERPISNFLPQEDGGYLKLGGGLERTQAEFAKFSARDAE
HHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCH
VLPAYYDALENVAELLRDLALRVPPNVGEGLRTLLDGARQGRRFAGLSLEQQRDVLDLFT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHH
KSARTMLDSWFESEAVKAAFGFDAVVGNYASPDTPGSAYVLLHHVFGEVNSRKGAWGHSV
HHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
GGMGRITEIMAKVCRDHGVEISLESPVAKVLVDGGKAVGVRLVGGEEIAAARVIANVGPK
CCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCHH
LLYERLMDAADLPADFQRRISGFKVGSGTFRMNVALSELPRFTCLPEPGEHHQSGIILAP
HHHHHHHHHCCCCHHHHHHHCCEEECCCEEEEEEEHHHCCCEECCCCCCCCCCCCEEEEC
TLDYMDRAFLDAKQYGWSKAPIVEMLIPSTVDDSLAPEGCHVASLFCQQFAPELPAKEDG
CHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
TLRDWDDEEEAAADCILDTVEKHAPGFRASIVGQTRLSPKGLERKFGLVGGDIMHGNMSL
CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCEEEECCCCH
DQLWAARPVLGNGGYRGPVKGLYMCGAGTHPGGGVTGAPGHNAAAVILRDRGLFAPRWR
HHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure 
TKACDALIIGAGHNGLVCAFYLARAGLKVRIVEARDVVGGAAVTEEFAPGFRNSVASYT
CCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHCCHHHHHHHCCCHHHHHHHHH
VSLLQPKVIADMRLADHGYRVIERPISNFLPQEDGGYLKLGGGLERTQAEFAKFSARDAE
HHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCH
VLPAYYDALENVAELLRDLALRVPPNVGEGLRTLLDGARQGRRFAGLSLEQQRDVLDLFT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHH
KSARTMLDSWFESEAVKAAFGFDAVVGNYASPDTPGSAYVLLHHVFGEVNSRKGAWGHSV
HHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
GGMGRITEIMAKVCRDHGVEISLESPVAKVLVDGGKAVGVRLVGGEEIAAARVIANVGPK
CCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCHH
LLYERLMDAADLPADFQRRISGFKVGSGTFRMNVALSELPRFTCLPEPGEHHQSGIILAP
HHHHHHHHHCCCCHHHHHHHCCEEECCCEEEEEEEHHHCCCEECCCCCCCCCCCCEEEEC
TLDYMDRAFLDAKQYGWSKAPIVEMLIPSTVDDSLAPEGCHVASLFCQQFAPELPAKEDG
CHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
TLRDWDDEEEAAADCILDTVEKHAPGFRASIVGQTRLSPKGLERKFGLVGGDIMHGNMSL
CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCEEEECCCCH
DQLWAARPVLGNGGYRGPVKGLYMCGAGTHPGGGVTGAPGHNAAAVILRDRGLFAPRWR
HHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8467787 [H]