| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488619
Identifier: 103488619
GI number: 103488619
Start: 3295572
End: 3296123
Strand: Reverse
Name: 103488619
Synonym: Sala_3144
Alternate gene names: NA
Gene position: 3296123-3295572 (Counterclockwise)
Preceding gene: 103488621
Following gene: 103488616
Centisome position: 98.53
GC content: 68.3
Gene sequence:
>552_bases ATGGCGACGCGATCCGGACCGGCCGCAGGCGACCTGTCCCTTTCGGAAATCAAGGAGTTCGCGGGCTTTCCCGCGGGGAC CCAGCGCTATATCCGCCGGTCGCTCGACATCGGGCTCGCCCGCGAGGATGCGATCGCCCGCTGGTCGCGCGACATGGTCG AGGAAACCGCGATCCGCGTCCAGGCCAAGGTCTATCAGCGCATTGCCGAAATCCGCGCCCACATTCCCGACGACAGCGGC CTCGACGCGCTCGAAGGCTTCATGGCGCCGCTCGTTGCGGTGTCGGCGTTCGATCTGGGGCAGGACCGGCTGCCGGGTTT TTCCGCCTATCGCTTCCTTTACGAGCGGCTGCTCGGCGCGCATGCGCGGCCGTGGTTGCCCGGCGCCTTTTGCGCGGCGG CGTCGCTGCCGCATCTGCACCCCGACAAGCGCAAGACGCTGCTCCAGTCGATCAGCGAAGCCGCCGCGACGGCGCCGGGC TGGTCGGCGCGCGAACCGAGCTTCTATCCCGAATGGGTCGACAAGATCGACGAGACCAGGCCGGCGAACTGA
Upstream 100 bases:
>100_bases CGACGCGATGGTTAACCTGCCGCTAACGATTTTGGTGGCACAATGTTGGATGCAGGCCTCCGGGGGGATGGCTCCCCGGG CGCCGAGCGGGAGCATGACG
Downstream 100 bases:
>100_bases TCAGCGGCGGTTTCGCGGGGGCGACGGCTGGTTTCGGCCGCAACCCGCCGTTCGATCAAGCCAGCGCCCGGTACAGCCCG AACGCGCTGGTCGCGGTCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 183; Mature: 182
Protein sequence:
>183_residues MATRSGPAAGDLSLSEIKEFAGFPAGTQRYIRRSLDIGLAREDAIARWSRDMVEETAIRVQAKVYQRIAEIRAHIPDDSG LDALEGFMAPLVAVSAFDLGQDRLPGFSAYRFLYERLLGAHARPWLPGAFCAAASLPHLHPDKRKTLLQSISEAAATAPG WSAREPSFYPEWVDKIDETRPAN
Sequences:
>Translated_183_residues MATRSGPAAGDLSLSEIKEFAGFPAGTQRYIRRSLDIGLAREDAIARWSRDMVEETAIRVQAKVYQRIAEIRAHIPDDSG LDALEGFMAPLVAVSAFDLGQDRLPGFSAYRFLYERLLGAHARPWLPGAFCAAASLPHLHPDKRKTLLQSISEAAATAPG WSAREPSFYPEWVDKIDETRPAN >Mature_182_residues ATRSGPAAGDLSLSEIKEFAGFPAGTQRYIRRSLDIGLAREDAIARWSRDMVEETAIRVQAKVYQRIAEIRAHIPDDSGL DALEGFMAPLVAVSAFDLGQDRLPGFSAYRFLYERLLGAHARPWLPGAFCAAASLPHLHPDKRKTLLQSISEAAATAPGW SAREPSFYPEWVDKIDETRPAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20180; Mature: 20049
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATRSGPAAGDLSLSEIKEFAGFPAGTQRYIRRSLDIGLAREDAIARWSRDMVEETAIRV CCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH QAKVYQRIAEIRAHIPDDSGLDALEGFMAPLVAVSAFDLGQDRLPGFSAYRFLYERLLGA HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHCC HARPWLPGAFCAAASLPHLHPDKRKTLLQSISEAAATAPGWSAREPSFYPEWVDKIDETR CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC PAN CCC >Mature Secondary Structure ATRSGPAAGDLSLSEIKEFAGFPAGTQRYIRRSLDIGLAREDAIARWSRDMVEETAIRV CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH QAKVYQRIAEIRAHIPDDSGLDALEGFMAPLVAVSAFDLGQDRLPGFSAYRFLYERLLGA HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHCC HARPWLPGAFCAAASLPHLHPDKRKTLLQSISEAAATAPGWSAREPSFYPEWVDKIDETR CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC PAN CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA