Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488616

Identifier: 103488616

GI number: 103488616

Start: 3293281

End: 3293616

Strand: Reverse

Name: 103488616

Synonym: Sala_3141

Alternate gene names: NA

Gene position: 3293616-3293281 (Counterclockwise)

Preceding gene: 103488619

Following gene: 103488610

Centisome position: 98.46

GC content: 66.96

Gene sequence:

>336_bases
ATGTCCTACAAGCTCTCCGCTTTCCGTCATTTCCCCTCCGCCTTTGCCATCGTCGCCGCGTCGGCGCTCGCCTTTGCCGG
GCTGATGGCATCGACCACCCCCGCCTATGCCCAGTCGGGCGGCGATTATCGCTGCGCGGGCCTCGCCGAACAGGCGCATG
TCGCGGCAAACGGCCTCGAAGGCGCCAGGCAGTCGAGCGCAAAGCGCTTTGTTTCGACCGGCAAGAAGCTGTGCGAAGCG
GGCAATGAACGCGCCGCCGCCAAGCAGTTCCGCGCCGCGCTGAAGATCGCCGGCGTCGCCGAAGTCGAAACCGACAGCCA
GCTGGCCGCGCGCTAA

Upstream 100 bases:

>100_bases
GTTAAATCCTGCTTCAAGGCACTTGCAGATTATAGAGGATTATCTAAGTGCGCAAGCGCATCTATAAAGGTTGCACAACG
AAACGAAAGGAACCTCTCCC

Downstream 100 bases:

>100_bases
CAGGCGGCGCCACGACAAGCCAGGACAGAATCTCCGGACCGTCCTCTCCCTCTCCCCCGACGGGTCCACAAACTGGGGCG
GCACTCGATACGAGGCCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MSYKLSAFRHFPSAFAIVAASALAFAGLMASTTPAYAQSGGDYRCAGLAEQAHVAANGLEGARQSSAKRFVSTGKKLCEA
GNERAAAKQFRAALKIAGVAEVETDSQLAAR

Sequences:

>Translated_111_residues
MSYKLSAFRHFPSAFAIVAASALAFAGLMASTTPAYAQSGGDYRCAGLAEQAHVAANGLEGARQSSAKRFVSTGKKLCEA
GNERAAAKQFRAALKIAGVAEVETDSQLAAR
>Mature_110_residues
SYKLSAFRHFPSAFAIVAASALAFAGLMASTTPAYAQSGGDYRCAGLAEQAHVAANGLEGARQSSAKRFVSTGKKLCEAG
NERAAAKQFRAALKIAGVAEVETDSQLAAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11470; Mature: 11339

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYKLSAFRHFPSAFAIVAASALAFAGLMASTTPAYAQSGGDYRCAGLAEQAHVAANGLE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEHHHHHHHHHHHHCCC
GARQSSAKRFVSTGKKLCEAGNERAAAKQFRAALKIAGVAEVETDSQLAAR
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHCCCCCHHHHCC
>Mature Secondary Structure 
SYKLSAFRHFPSAFAIVAASALAFAGLMASTTPAYAQSGGDYRCAGLAEQAHVAANGLE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEHHHHHHHHHHHHCCC
GARQSSAKRFVSTGKKLCEAGNERAAAKQFRAALKIAGVAEVETDSQLAAR
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA