Click here to switch to the map view.

The map label for this gene is yiaD [H]

Identifier: 103488577

GI number: 103488577

Start: 3249126

End: 3249818

Strand: Reverse

Name: yiaD [H]

Synonym: Sala_3101

Alternate gene names: 103488577

Gene position: 3249818-3249126 (Counterclockwise)

Preceding gene: 103488579

Following gene: 103488576

Centisome position: 97.15

GC content: 65.95

Gene sequence:

>693_bases
ATGATGAAAAGCAGAACAACCAGGCTCGCATTTCTGACCGGCCTCGGCGCGATCGCGCTGACCGGCTGCGTCACCGACCC
GGTGACCGGCGAACGCAAGATTTCCAAGGCCGCGATCGGCGGCGTCGGCGGCGCGCTCGGCGGTTATCTGCTCGGCGACC
TGATCGGCGGGCGCAGCGATCGCACCGAAAAGATCGTCGGCGCGGGTATCGGCGCGGTCGCCGGCGCGGGCGTCGGCTAT
TATATGGATCAGCAGGAAAAGAAGCTGCGCGAACGTACCGCGGGCACCGGCATCGACGTCGAGCGGCAGGGCGACCAGCT
CGTGCTCAACATGCCCGGCGACGTGACCTTCGACCTCAATAGCGCGATGGTGAAATCGCAGTTCCGCAGCGCGCTCGACA
ATGTCGCCGCGACGCTCGCCGAATATCCGAGCACCTATATCGACGTCTATGGTCACACCGATTCGACCGGCAGCGAAACC
TATAATCAGGGGCTGTCCGAACGCCGCGCGGCGTCGGTGGCCGACTATCTGGCCGGCCGCGGCATCCAGCGCGCGCGCAT
GGCGACGCTCGGCTATGGCGAATCGCAGCTGAAATGCGCGCCCGAACGGACCGAGGCCGATTATCAGTGCAACCGCCGCG
TCGAAATCCGCATCGCGCCGGTCACGCAGGCCGACGTGAACGCCGCGGGGTAA

Upstream 100 bases:

>100_bases
CTATTCAGTCATGGTCTGGAACCAGAACGCTGGCCATATGTTATCGGCAAGTACCGGCGCGTGCACAGTTTCGCACATAT
CCGCCACATAAGGGAGCGAC

Downstream 100 bases:

>100_bases
GCGGTTTTCCGGCTAGAGCGCGATGACCTGATATTGACCCACCGTGATTGCCCCCTGAAGTTCGTCGGCAAGAAGCGTCT
CGCAGGACGGGCTGGTTGCC

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MMKSRTTRLAFLTGLGAIALTGCVTDPVTGERKISKAAIGGVGGALGGYLLGDLIGGRSDRTEKIVGAGIGAVAGAGVGY
YMDQQEKKLRERTAGTGIDVERQGDQLVLNMPGDVTFDLNSAMVKSQFRSALDNVAATLAEYPSTYIDVYGHTDSTGSET
YNQGLSERRAASVADYLAGRGIQRARMATLGYGESQLKCAPERTEADYQCNRRVEIRIAPVTQADVNAAG

Sequences:

>Translated_230_residues
MMKSRTTRLAFLTGLGAIALTGCVTDPVTGERKISKAAIGGVGGALGGYLLGDLIGGRSDRTEKIVGAGIGAVAGAGVGY
YMDQQEKKLRERTAGTGIDVERQGDQLVLNMPGDVTFDLNSAMVKSQFRSALDNVAATLAEYPSTYIDVYGHTDSTGSET
YNQGLSERRAASVADYLAGRGIQRARMATLGYGESQLKCAPERTEADYQCNRRVEIRIAPVTQADVNAAG
>Mature_230_residues
MMKSRTTRLAFLTGLGAIALTGCVTDPVTGERKISKAAIGGVGGALGGYLLGDLIGGRSDRTEKIVGAGIGAVAGAGVGY
YMDQQEKKLRERTAGTGIDVERQGDQLVLNMPGDVTFDLNSAMVKSQFRSALDNVAATLAEYPSTYIDVYGHTDSTGSET
YNQGLSERRAASVADYLAGRGIQRARMATLGYGESQLKCAPERTEADYQCNRRVEIRIAPVTQADVNAAG

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=221, Percent_Identity=42.0814479638009, Blast_Score=151, Evalue=3e-38,
Organism=Escherichia coli, GI1787191, Length=120, Percent_Identity=37.5, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786962, Length=99, Percent_Identity=37.3737373737374, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 24266; Mature: 24266

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKSRTTRLAFLTGLGAIALTGCVTDPVTGERKISKAAIGGVGGALGGYLLGDLIGGRSD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
RTEKIVGAGIGAVAGAGVGYYMDQQEKKLRERTAGTGIDVERQGDQLVLNMPGDVTFDLN
CHHHHHHCCHHHHHHCCCCHHHCHHHHHHHHHHCCCCCCEECCCCEEEEECCCCEEECCH
SAMVKSQFRSALDNVAATLAEYPSTYIDVYGHTDSTGSETYNQGLSERRAASVADYLAGR
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
GIQRARMATLGYGESQLKCAPERTEADYQCNRRVEIRIAPVTQADVNAAG
CCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MMKSRTTRLAFLTGLGAIALTGCVTDPVTGERKISKAAIGGVGGALGGYLLGDLIGGRSD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
RTEKIVGAGIGAVAGAGVGYYMDQQEKKLRERTAGTGIDVERQGDQLVLNMPGDVTFDLN
CHHHHHHCCHHHHHHCCCCHHHCHHHHHHHHHHCCCCCCEECCCCEEEEECCCCEEECCH
SAMVKSQFRSALDNVAATLAEYPSTYIDVYGHTDSTGSETYNQGLSERRAASVADYLAGR
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
GIQRARMATLGYGESQLKCAPERTEADYQCNRRVEIRIAPVTQADVNAAG
CCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]