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The map label for this gene is rplU [H]

Identifier: 103488579

GI number: 103488579

Start: 3251365

End: 3251928

Strand: Reverse

Name: rplU [H]

Synonym: Sala_3103

Alternate gene names: 103488579

Gene position: 3251928-3251365 (Counterclockwise)

Preceding gene: 103488580

Following gene: 103488577

Centisome position: 97.21

GC content: 70.92

Gene sequence:

>564_bases
ATGACGTGGCTTCAGGAAAACTGGATTATCGCGCTCGTCGGCCTCGTCGTGGCTGTCGTGCTGCTCTGGTGGCGGTTCGG
CCGCGCCAGGCCGACCGGACCCGCGCTGCCGACCGCGGAGCCGCCAAAGCCCGCCAAGCCGCTCGAACCCGTCAAGCCCG
AAATCGTCGCGGCCGAAGCCGCGCGCTTCAAACCAATCGAGCCCCGGCCGCGACCCGTGCCGCCGCCCGTCGCCGAACCC
GCGGTCGAGGCCGCGGCAATCCCCGCCGAACCGACGGTCCCGCCGCCCCCAGCGCCCGCACCGACGGCCGCCAAGGCCGA
TAATCTGCAACTCCTGAAGGGCGTCGGCCCCAAGCTCGGCGCGCTGCTGAACGGCCTCGGCATTACCCGCTTCCAGCAGA
TCGCCGACTGGACCGACGCCGACGTTGCGCGCATCGACGCACAGCTCGGCGCCTTCCAGGGCCGCATCGCGCGCGACAAC
CTGATCGACCAGGCCAGCTATCTCGCGCGCGGCGACAAGGCCGGGTTCGAGGCGAAATATGGCGCGCTGAGCGGAGAGCC
TTAG

Upstream 100 bases:

>100_bases
GGGCCGAATCGCGTCGCTCGTCCCACCCGGCAGAGCAAGGGCGGGACTGGACGCGCGGACCGCGCGCGCATAATCTGGCC
CGCAATACAGGGAGATTGTG

Downstream 100 bases:

>100_bases
AGCGGCGCCTATTCGGCCTCGGCGCCCTTCGGCTTGCGGACGTCGCTGACGAGCAGCTTGTCGATCTTGCGTCCGTCCAT
GTCGACGATCTCGAACTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTWLQENWIIALVGLVVAVVLLWWRFGRARPTGPALPTAEPPKPAKPLEPVKPEIVAAEAARFKPIEPRPRPVPPPVAEP
AVEAAAIPAEPTVPPPPAPAPTAAKADNLQLLKGVGPKLGALLNGLGITRFQQIADWTDADVARIDAQLGAFQGRIARDN
LIDQASYLARGDKAGFEAKYGALSGEP

Sequences:

>Translated_187_residues
MTWLQENWIIALVGLVVAVVLLWWRFGRARPTGPALPTAEPPKPAKPLEPVKPEIVAAEAARFKPIEPRPRPVPPPVAEP
AVEAAAIPAEPTVPPPPAPAPTAAKADNLQLLKGVGPKLGALLNGLGITRFQQIADWTDADVARIDAQLGAFQGRIARDN
LIDQASYLARGDKAGFEAKYGALSGEP
>Mature_186_residues
TWLQENWIIALVGLVVAVVLLWWRFGRARPTGPALPTAEPPKPAKPLEPVKPEIVAAEAARFKPIEPRPRPVPPPVAEPA
VEAAAIPAEPTVPPPPAPAPTAAKADNLQLLKGVGPKLGALLNGLGITRFQQIADWTDADVARIDAQLGAFQGRIARDNL
IDQASYLARGDKAGFEAKYGALSGEP

Specific function: This protein binds to 23S rRNA in the presence of protein L20 [H]

COG id: COG3743

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001787 [H]

Pfam domain/function: PF00829 Ribosomal_L21p [H]

EC number: NA

Molecular weight: Translated: 19814; Mature: 19683

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWLQENWIIALVGLVVAVVLLWWRFGRARPTGPALPTAEPPKPAKPLEPVKPEIVAAEA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
ARFKPIEPRPRPVPPPVAEPAVEAAAIPAEPTVPPPPAPAPTAAKADNLQLLKGVGPKLG
HHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHH
ALLNGLGITRFQQIADWTDADVARIDAQLGAFQGRIARDNLIDQASYLARGDKAGFEAKY
HHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCC
GALSGEP
CCCCCCC
>Mature Secondary Structure 
TWLQENWIIALVGLVVAVVLLWWRFGRARPTGPALPTAEPPKPAKPLEPVKPEIVAAEA
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
ARFKPIEPRPRPVPPPVAEPAVEAAAIPAEPTVPPPPAPAPTAAKADNLQLLKGVGPKLG
HHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHH
ALLNGLGITRFQQIADWTDADVARIDAQLGAFQGRIARDNLIDQASYLARGDKAGFEAKY
HHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCC
GALSGEP
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA