| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yeiJ [C]
Identifier: 103488569
GI number: 103488569
Start: 3243206
End: 3244459
Strand: Reverse
Name: yeiJ [C]
Synonym: Sala_3093
Alternate gene names: 103488569
Gene position: 3244459-3243206 (Counterclockwise)
Preceding gene: 103488576
Following gene: 103488568
Centisome position: 96.99
GC content: 64.43
Gene sequence:
>1254_bases ATGGAACGCCTGATCGGTCTGGCCGGCATCGCCGCATTGCTCATGATTGCCGTGCTTTTTTCATCGAACCGGCGGTGGAT CCGCCTGCGCGTCGTCATCCCCGCCTTCCTGCTCCAGGCCGGCTTCGCGGTGCTCGTCATTGCGACGCCGTGGGGCCGCG CGGGGATCCAGGCAATGTCGAACGGCGTTTCCAACCTGCTCGGCTATGCCAAGGCGGGCACCGACTTCATTTTCGGTCCG CTGGCGTCGCCCGAAATGGGCGCGAACAGCTTTGCCATCGCCGCCTTGCCGGTGATCGTCTTTTTCGCCTCGCTCATCTC GATCCTCTATTATCTCGGCATCATGCAGCTGGTGATCAAATGGGTCGGCGGCGCGATCCAGAAGGTCACGGGCATCACCA AGGTCGAAAGCCTCGGCGCCGCGGCGAACATCTTTGTCGGCCAGTCCGAATCGCCGCTCGTCATCCGCCCCTATCTCGCA GGCCTTACCCCCTCACAGCTTTTCACCGTGATGACGGTCGGCATGGCGGGGGTCGCGGGCACCATCCTGGGCGCCTATGC GAGCATGATCGGCGAGCAGCTCCTGCCCTATCTGCTCGCCGCGAGCTTCATGTCGGCACCGGGGGGCATCCTGATGGCCA AGATCATGATGCCCGACGATCCCAGGGATCTGGGCATCGAACCCGTTATCATGCCCGAGGCCAGCCATGACGAGGAAAAG CCCGCCAACATCATCATGGCCGCCGCGCAGGGCGCGCAAACGGGGGTCAAGCTGGCGGTCGCGGTCGGCGCGATGGTGCT CGCCTTCGTCGCGCTCGTCGCGCTGGCGAATGGCCTGCTCGCCGGAATGGGCGGCTGGTTCGGCTATCCCGACCTGTCGT TTCAGGCCGTTATCGGCGCGATCTTCCGTCCCGTGATGTGGCTTATGGGCGTACCCTGGGACGAAAGCGCCGTTGTCGGT GGCCTGTTCGGCAGCAAGGTCGTGCTCAACGAGTTCGTCGCCTTCATCGACCTCGGCAAGGTGCAGGGCGATCTGTCGAT GACCGGGGTTGCAATCGCGACCTTTGCGCTCTGCGGTTTCGCCAATTTCAGCTCGATCGCGATCCAGATGGCGGTGACCG GCGGCCTCGCCCCCAACCAGCGCCCGATGATCGCACGGCTGGGATTGAAGGCGCTGCTGGCCGGCAGCCTGTCGAACCTC ATGTCGGCCGCGCTTGCCGGGCTGATGATCGCGCTGGTTCCGCCGATCGGATAA
Upstream 100 bases:
>100_bases CGCTGGAAAGACCGGGAAAGATGCGGCGGCGCGCGCCCCTTGCCCTGTCGCCAAAGCCCGCTAGACAGGCGCATTAACTT GCGGGGGACGCATCGACATT
Downstream 100 bases:
>100_bases CCGGCCAGAATCAGGCGTGACGATTGCAAGCGACAGACAAATAACGTAACCGTTCCGCTGAAAAAGTGTCCCGGGTCGTA ATCGTCAACAGGGAGGCTGC
Product: Na+ dependent nucleoside transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 417; Mature: 417
Protein sequence:
>417_residues MERLIGLAGIAALLMIAVLFSSNRRWIRLRVVIPAFLLQAGFAVLVIATPWGRAGIQAMSNGVSNLLGYAKAGTDFIFGP LASPEMGANSFAIAALPVIVFFASLISILYYLGIMQLVIKWVGGAIQKVTGITKVESLGAAANIFVGQSESPLVIRPYLA GLTPSQLFTVMTVGMAGVAGTILGAYASMIGEQLLPYLLAASFMSAPGGILMAKIMMPDDPRDLGIEPVIMPEASHDEEK PANIIMAAAQGAQTGVKLAVAVGAMVLAFVALVALANGLLAGMGGWFGYPDLSFQAVIGAIFRPVMWLMGVPWDESAVVG GLFGSKVVLNEFVAFIDLGKVQGDLSMTGVAIATFALCGFANFSSIAIQMAVTGGLAPNQRPMIARLGLKALLAGSLSNL MSAALAGLMIALVPPIG
Sequences:
>Translated_417_residues MERLIGLAGIAALLMIAVLFSSNRRWIRLRVVIPAFLLQAGFAVLVIATPWGRAGIQAMSNGVSNLLGYAKAGTDFIFGP LASPEMGANSFAIAALPVIVFFASLISILYYLGIMQLVIKWVGGAIQKVTGITKVESLGAAANIFVGQSESPLVIRPYLA GLTPSQLFTVMTVGMAGVAGTILGAYASMIGEQLLPYLLAASFMSAPGGILMAKIMMPDDPRDLGIEPVIMPEASHDEEK PANIIMAAAQGAQTGVKLAVAVGAMVLAFVALVALANGLLAGMGGWFGYPDLSFQAVIGAIFRPVMWLMGVPWDESAVVG GLFGSKVVLNEFVAFIDLGKVQGDLSMTGVAIATFALCGFANFSSIAIQMAVTGGLAPNQRPMIARLGLKALLAGSLSNL MSAALAGLMIALVPPIG >Mature_417_residues MERLIGLAGIAALLMIAVLFSSNRRWIRLRVVIPAFLLQAGFAVLVIATPWGRAGIQAMSNGVSNLLGYAKAGTDFIFGP LASPEMGANSFAIAALPVIVFFASLISILYYLGIMQLVIKWVGGAIQKVTGITKVESLGAAANIFVGQSESPLVIRPYLA GLTPSQLFTVMTVGMAGVAGTILGAYASMIGEQLLPYLLAASFMSAPGGILMAKIMMPDDPRDLGIEPVIMPEASHDEEK PANIIMAAAQGAQTGVKLAVAVGAMVLAFVALVALANGLLAGMGGWFGYPDLSFQAVIGAIFRPVMWLMGVPWDESAVVG GLFGSKVVLNEFVAFIDLGKVQGDLSMTGVAIATFALCGFANFSSIAIQMAVTGGLAPNQRPMIARLGLKALLAGSLSNL MSAALAGLMIALVPPIG
Specific function: Unknown
COG id: COG1972
COG function: function code F; Nucleoside permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family [H]
Homologues:
Organism=Homo sapiens, GI11545853, Length=423, Percent_Identity=35.4609929078014, Blast_Score=239, Evalue=5e-63, Organism=Homo sapiens, GI42542381, Length=433, Percent_Identity=35.796766743649, Blast_Score=238, Evalue=1e-62, Organism=Homo sapiens, GI227116277, Length=425, Percent_Identity=34.3529411764706, Blast_Score=234, Evalue=1e-61, Organism=Escherichia coli, GI1788485, Length=421, Percent_Identity=41.3301662707838, Blast_Score=278, Evalue=5e-76, Organism=Escherichia coli, GI1788488, Length=422, Percent_Identity=41.2322274881517, Blast_Score=275, Evalue=3e-75, Organism=Escherichia coli, GI1788737, Length=413, Percent_Identity=32.4455205811138, Blast_Score=210, Evalue=1e-55, Organism=Caenorhabditis elegans, GI17560276, Length=418, Percent_Identity=34.688995215311, Blast_Score=230, Evalue=1e-60, Organism=Caenorhabditis elegans, GI71991794, Length=418, Percent_Identity=32.7751196172249, Blast_Score=218, Evalue=7e-57, Organism=Caenorhabditis elegans, GI25146537, Length=210, Percent_Identity=31.9047619047619, Blast_Score=114, Evalue=9e-26, Organism=Drosophila melanogaster, GI45552517, Length=415, Percent_Identity=36.6265060240964, Blast_Score=257, Evalue=1e-68, Organism=Drosophila melanogaster, GI19921868, Length=415, Percent_Identity=36.6265060240964, Blast_Score=257, Evalue=1e-68, Organism=Drosophila melanogaster, GI45552519, Length=415, Percent_Identity=36.6265060240964, Blast_Score=256, Evalue=1e-68, Organism=Drosophila melanogaster, GI281360430, Length=410, Percent_Identity=35.8536585365854, Blast_Score=226, Evalue=2e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008276 - InterPro: IPR018270 - InterPro: IPR011642 - InterPro: IPR011657 - InterPro: IPR002668 [H]
Pfam domain/function: PF07670 Gate; PF07662 Nucleos_tra2_C; PF01773 Nucleos_tra2_N [H]
EC number: NA
Molecular weight: Translated: 43160; Mature: 43160
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 5.5 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 5.5 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERLIGLAGIAALLMIAVLFSSNRRWIRLRVVIPAFLLQAGFAVLVIATPWGRAGIQAMS CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCEEEEEECCCCHHHHHHHH NGVSNLLGYAKAGTDFIFGPLASPEMGANSFAIAALPVIVFFASLISILYYLGIMQLVIK HHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WVGGAIQKVTGITKVESLGAAANIFVGQSESPLVIRPYLAGLTPSQLFTVMTVGMAGVAG HHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHH TILGAYASMIGEQLLPYLLAASFMSAPGGILMAKIMMPDDPRDLGIEPVIMPEASHDEEK HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEECCCCCCCCCC PANIIMAAAQGAQTGVKLAVAVGAMVLAFVALVALANGLLAGMGGWFGYPDLSFQAVIGA CHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH IFRPVMWLMGVPWDESAVVGGLFGSKVVLNEFVAFIDLGKVQGDLSMTGVAIATFALCGF HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC ANFSSIAIQMAVTGGLAPNQRPMIARLGLKALLAGSLSNLMSAALAGLMIALVPPIG CCHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MERLIGLAGIAALLMIAVLFSSNRRWIRLRVVIPAFLLQAGFAVLVIATPWGRAGIQAMS CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCEEEEEECCCCHHHHHHHH NGVSNLLGYAKAGTDFIFGPLASPEMGANSFAIAALPVIVFFASLISILYYLGIMQLVIK HHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WVGGAIQKVTGITKVESLGAAANIFVGQSESPLVIRPYLAGLTPSQLFTVMTVGMAGVAG HHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHH TILGAYASMIGEQLLPYLLAASFMSAPGGILMAKIMMPDDPRDLGIEPVIMPEASHDEEK HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEECCCCCCCCCC PANIIMAAAQGAQTGVKLAVAVGAMVLAFVALVALANGLLAGMGGWFGYPDLSFQAVIGA CHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH IFRPVMWLMGVPWDESAVVGGLFGSKVVLNEFVAFIDLGKVQGDLSMTGVAIATFALCGF HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC ANFSSIAIQMAVTGGLAPNQRPMIARLGLKALLAGSLSNLMSAALAGLMIALVPPIG CCHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]